Comparing bowtie and BWA to align short reads from a RNA-Seq experiment

Advances in Intelligent and Soft Computing

Volumn 154 AISC, Issue , 2012, Pages 197-207

  Medina Medina, N ^a   Broka, A ^b   Lacey, S ^c   Lin, H ^d   Klings, E S ^d   Baldwin, C T ^d   Steinberg, M H ^d   Sebastiani, P ^c  

^a UNIVERSITY OF GRANADA   (Spain)

^b BOSTON UNIVERSITY   (United States)

^c BOSTON UNIVERSITY SCHOOL OF PUBLIC HEALTH   (United States)

^d BOSTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

BWA and Bowtie; ELAND; high throughput sequencing; RNA Seq; short reads alignment

Indexed keywords

ALIGNMENT ALGORITHMS; BOW TIE; ELAND; GENETIC RESEARCH; HIGH-THROUGHPUT; NUCLEOTIDE SEQUENCES; RNA-SEQ; RUNTIMES; SECOND PHASE;

ALGORITHMS; ALIGNMENT; INNOVATION; RNA;

BIOINFORMATICS;

EID: 84861220667     PISSN: 18675662     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-3-642-28839-5_23     Document Type: Conference Paper

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