Evolutionary history of the odd-nosed monkeys and the phylogenetic position of the newly described myanmar snub-nosed monkey rhinopithecus strykeri

PLoS ONE

Volumn 7, Issue 5, 2012, Pages

  Liedigk, Rasmus ^a   Yang, Mouyu ^a,b   Jablonski, Nina G ^c   Momberg, Frank ^d   Geissmann, Thomas ^e   Lwin, Ngwe ^f   Hla, Tony Htin ^f   Liu, Zhijin ^a,g   Wong, Bruce ^g   Ming, Li ^g   Yongcheng, Long ^h   Zhang, Ya Ping ⁱ   Nadler, Tilo ^j   Zinner, Dietmar ^a   Roos, Christian ^a  

^a GERMAN PRIMATE CENTER   (Germany)

^b Fanjingshan National Nature Reserve   (China)

^c PENNSYLVANIA STATE UNIVERSITY   (United States)

^d FAUNA AND FLORA INTERNATIONAL   (United Kingdom)

^e UNIVERSITY OF ZURICH   (Switzerland)

^f Biodiversity and Nature Conservation Association (BANCA)   (Myanmar)

^g INSTITUTE OF ZOOLOGY   (China)

^h THE NATURE CONSERVANCY   (United States)

ⁱ KUNMING INSTITUTE OF ZOOLOGY   (China)

^j Cuc Phuong National Park   (Viet Nam)

more..

Author keywords

[No Author keywords available]

Indexed keywords

AGE; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CLIMATE CHANGE; CONTROLLED STUDY; EVOLUTION; GENE FLOW; GEOLOGY; HAPLORHINI; MIOCENE; MITOCHONDRIAL GENOME; NASALIS; NONHUMAN; PHYLOGENY; PLEISTOCENE; PYGATHRIX; RHINOPITHECUS STRYKERI; SIMIAS; X CHROMOSOME; Y CHROMOSOME; ANIMAL; CERCOPITHECIDAE; CHEMISTRY; CLASSIFICATION; COLOBINAE; GENETICS;

NASALIS; PRIMATES; PYGATHRIX; SIMIAS;

MITOCHONDRIAL DNA;

ANIMALS; BIOLOGICAL EVOLUTION; CERCOPITHECIDAE; COLOBINAE; DNA, MITOCHONDRIAL; PHYLOGENY;

EID: 84861215490     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0037418     Document Type: Article

References (70)

1. Ferguson DK, (1993) The impact of late Cenozoic environmental changes in East Asia on the distribution of terrestrial plants and animals: Evolving landscapes and evolving biotas of East Asia since the mid-Tertiary. In: Jablonski N, editors. Proceedings of the third conference on the evolution of east Asian environment Hong Kong Centre of Asian Studies, University of Hong Kong pp. 145-196.
2. Chaplin G, (2005) Physical geography of the Gaoligong Shan area of southwest China in relation to biodiversity. Proc California Acad Sci 56: 27-556.
3. Jablonski NG, Whitfort MJ, Roberts-Smith N, Xu Q, (2000) The influence of life history and diet on the distribution of catarrhine primates during the Pleistocene in eastern Asia. J Hum Evol 39: 131-157.
4. Louys J, Curnoe D, Tong H, (2007) Characteristics of Pleistocene megafauna extinctions in Southeast Asia. Palaeo 243: 152-173.
5. Jablonski NG, (1998) Natural history of the doucs and snub-nosed monkeys. New Jersey World Scientific Publishing Company.
6. Tan C, Grüter C, Wright B Odd-nosed Monkeys: Recent advances in the study of the forgotten colobinesNewYork:Springer, In press.
7. Geissmann T, Lwin N, Aung SS, Aung TN, Aung ZM, et al. (2011) A new species of snub-nosed monkey, genus Rhinopithecus Milne-Edwards, 1872 (Primates, Colobinae), from northern Kachin state, northeastern Myanmar. Am J Primatol 73: 96-107.
8. IUCN (2011) IUCN red list of threatened species 2011.2. The IUCN Red List of Threatened Species website. 30 Available: http://www.iucnredlist.org. Accessed 2011 Dec.
9. Jablonski NG, Peng YZ, (1993) The phylogenetic relationships and classification of the doucs and snub-nosed langurs of China and Vietnam. Folia Primatol 60: 36-55.
10. Groves CP, (2001) Primate taxonomy. Washington DC Smithsonian Institution Press.
11. Sterner KN, Raaum RL, Zhang YP, Stewart CB, Disotell TR, (2006) Mitochondrial data support an odd-nosed colobine clade. Mol Phylogenet Evol 40: 1-7.
12. Osterholz M, Walter L, Roos C, (2008) Phylogenetic position of the langur genera Semnopithecus and Trachypithecus among Asian colobines, and genus affiliations of their species groups. BMC Evol Biol 8: 58.
13. Ting N, Tosi AJ, Li Y, Zhang YP, Disotell TR, (2008) Phylogenetic incongruence between nuclear and mitochondrial markers in the Asian colobines and the evolution of the langurs and leaf monkeys. Mol Phylogenet Evol 46: 466-474.
14. Roos C, Zinner D, Kubatko LS, Schwarz C, Yang M, et al. (2011) Nuclear versus mitochondrial DNA: Evidence for hybridization in colobine monkeys. BMC Evol Biol 11: 77.
15. Li Y, Wang X, Ting N, Zhang Y, (2011) Mitogenomic analysis of Chinese snub-nosed monkeys: Evidence of positive selection in NADH dehydrogenase genes in high-altitude adaptation. Mitochondrion 11: 497-503.
16. Perelman P, Johnson WE, Roos C, Seuánez HN, Horvath JE, et al. (2011) A molecular phylogeny of living primates. PLoS Genet 7: e1001342.
17. Roos C, Nadler T, (2001) Molecular evolution of the douc langurs. Zool Garten (NF) 71: 1-6.
18. Roos C, (2004) Molecular evolution and systematics of Vietnamese primates. In: Nadler T, Streicher U, Long HT, editors. Conservation of primates in Vietnam Hanoi Haki Publishing pp. 23-28.
19. Roos C, Thanh VN, Walter L, Nadler T, (2007) Molecular systematics of Indochinese primates. Vietn J Primatol 1 (1): 41-53.
20. Zhang YP, Ryder OA, (1998) Mitochondrial cytochrome b gene sequences of Old World monkeys: With special reference on evolution of Asian colobines. Primates 39: 39-49.
21. Li M, Wei F, Huang C, Pan R, de Ruiter J, (2004) Phylogeny of snub-nosed monkeys inferred from mitochondrial DNA, cytochrome b, and 12S rRNA sequences. Int J Primatol 25: 861-873.
22. Liu Z, Ren B, Wei F, Long Y, Hao Y, et al. (2007) Phylogeography and population structure of the Yunnan snub-nosed monkey (Rhinopithecus bieti) inferred from mitochondrial control region DNA sequence analysis. Mol Ecol 16: 3334-3349.
23. Yang M, Yang Y, Cui D, Fickenscher G, Zinner D, et al. (2012) Population genetic structure of Guizhou snub-nosed monkeys (Rhinopithecus brelichi) as inferred from mitochondrial control region sequences, and comparison with R. roxellana and R. bieti. Am J Phys Anthropol 147: 1-10.
24. Funk D, Omland K, (2003) Species-level paraphyly and polyphyly: Frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annu Rev Ecol Evol Syst 34: 397-423.
25. Avise JC, (2004) Molecular markers, natural history, and evolution. Sunderland, MA Sinauer Associates.
26. Arnold ML, Meyer A, (2006) Natural hybridization in primates: One evolutionary mechanism. Zoology 109: 261-276.
27. Zinner D, Arnold ML, Roos C, (2011) The strange blood: Natural hybridization in primates. Evol Anthropol 20: 96-103.
28. Zinner D, Arnold ML, Roos C, (2009) Is the new primate genus Rungwecebus a baboon? PLoS ONE 4: e4859.
29. Zinner D, Groeneveld LF, Keller C, Roos C, (2009) Mitochondrial phylogeography of baboons (Papio spp.) - Indication for introgressive hybridization? BMC Evol Biol 9: 83.
30. Osada N, (2011) Phylogenetic inconsistency caused by ancient sex-biased gene migration. PLoS ONE 6: e25549.
31. Liu Z, Ren B, Wu R, Zhao L, Hao Y, et al. (2009) The effect of landscape features on population genetic structure in Yunnan snub-nosed monkeys (Rhinopithecus bieti) implies an anthropogenic genetic discontinuity. Mol Ecol 18: 3831-3846.
32. Peng YZ, Pan RL, Jablonski NG, (1993) Classification and evolution of Asian colobines. Folia Primatol 60: 106-117.
33. Jablonski NG, (2002) Fossil Old World monkeys: The late Neogene radiation. In: Hartwig WC, editors. The primate fossil record Cambridge Cambridge University Press pp. 255-299.
34. Harrison T, Delson E, (2007) Mesopithecus sivalensis from the Late Miocene of the Siwaliks. Am J Phys Anthropol 132: 126.
35. Jablonski NG, Su D, Kelley J, Flynn LI, Ji X, (2011) The Mio-Pliocene colobine monkey, Mesopithecus, in China. Am J Phys Anthropol 144: 174.
36. Meijaard E, Groves CP, (2006) The geography of mammals and rivers in mainland Southeast Asia. In: Lehman SM, Fleagle JG, editors. Primate Biogeography New York Springer pp. 305-329.
37. Hallet B, Molnar P, (2001) Distorted drainage basins as markers of crustal strain east of the Himalayas. J Geophys Res 106: 13697-13709.
38. An Z, Kutzbach JE, Prell WL, Porter SC, (2001) Evolution of Asian monsoons and phased uplift of the Himalaya-Tibetan plateau since Late Miocene times. Nature 411: 62-66.
39. Miller KG, Kominz MA, Browning JV, Wright JD, Mountain GS, et al. (2005) The phanerozoic record of global sea-level change. Science 310: 1293-1298.
40. Ziegler T, Abegg C, Meijaard E, Perwitasari-Farajallah D, Walter L, Hodges JK, Roos C, (2007) Molecular phylogeny and evolutionary history of Southeast Asian macaques forming the M. silenus group. Mol Phylogenet Evol 42: 807-816.
41. Colbert EH, Hooijer DA, (1953) Pleistocene mammals from the limestone fissures of Szechuan, China. Bull Mus Nat Hist 102: 1024.
42. Jablonski NG, (1993) Quaternary environments and the evolution of primates in east Asia, with notes on two new specimens of fossil Cercopithecidae from China. Folia Primatol 60: 118-132.
43. Jablonski NG, Gu YM, (1991) A reassessment of Megamacaca lantianensis, a large monkey from the Pleistocene of north-central China. J Hum Evol 20: 51-66.
44. Thinh VN, Mootnick AR, Geissmann T, Li M, Ziegler T, et al. (2010) Mitochondrial evidence for multiple radiations in the evolutionary history of small apes. BMC Evol Biol 10: 74.
45. Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, et al. (2010) Geneious, version 5.4. Geneious website. 15 Available: http://www.geneious.com. Accessed 2011 Jan.
46. Wyman SK, Jansen RK, Boore JL, (2004) Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20: 3252-3255.
47. Katoh K, Kuma K, Toh H, Miyata T, (2005) MAFFT version 5: Improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33: 511-518.
48. Castresana J, (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540-552.
49. Maddison WP, Maddison DR, (2011) Mesquite: A modular system for evolutionary analysis, version 2.75. Available:http://mesquiteproject.org.
50. Swofford DL, (2003) PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4. Sunderland, MA Sinauer Associates.
51. Zwickl DJ, (2006) Genetic algorithm approaches for the phylogenetic analysis of large biological sequence data sets under the maximum likelihood criterion. Austin The University of Texas at Austin.
52. Huelsenbeck JP, Ronquist F, Nielsen R, Bollback JP, (2001) Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294: 2310-2314.
53. Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
54. Posada D, (2009) Selection of models of DNA evolution with jModelTest. Methods Mol Biol 537: 93-112.
55. Gelman A, Rubin D, (1992) Inference from iterative simulation using multiple sequences. Stat Sci 7: 457-511.
56. Rambaut A, Drummond AJ, (2007) Tracer: MCMC trace analysis tool, version 1.5. Tracer website. 11 Available: http://tree.bio.ed.ac.uk/sofware/tracer/. Accessed 2008 Feb.
57. Nylander JA, Wilgenbusch JC, Warren DL, Swofford DL, (2008) AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24: 581-583.
58. Kishino H, Hasegawa M, (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J Mol Evol 29: 170-179.
59. Drummond AJ, Ho SYW, Phillips MJ, Rambaut A, (2006) Relaxed phylogenetics and dating with confidence. PLoS Biol 4: e88.
60. Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
61. Vignaud P, Duringer P, Mackaye HT, Likius A, Blondel C, et al. (2002) Geology and palaeontology of the Upper Miocene Toros-Menalla hominid locality, Chad. Nature 418: 152-155.
62. Brunet M, Guy F, Pilbeam D, Lieberman DE, Likius A, et al. (2005) New material of the earliest hominid from the Upper Miocene of Chad. Nature 434: 752-755.
63. Lebatard AE, Bourlès DL, Duringer P, Jolivet M, Braucher R, et al. (2008) Cosmogenic nuclide dating of Sahelanthropus tchadensis and Australopithecus bahrelghazali: Mio-Pliocene hominids from Chad. Proc Natl Acad Sci U S A 105: 3226-3231.
64. Kelley J, (2002) The hominoid radiation in Asia. In: Hartwig WC, editors. The primate fossil record Cambridge Cambridge University Press pp. 369-384.
65. Leakey MG, (1993) Evolution of Theropithecus in the Turkana Basin. In: Jablonski NG, editors. Theropithecus, the rise and fall of a primate genus Cambridge Cambridge University Press pp. 85-124.
66. Delson E, (2000) Cercopithecinae. In: Delson E, Tattersall I, Van Couvering JA, Brooks AS, editors. Encyclopedia of human evolution and prehistory New York Garland Publishing Inc. pp pp. 166-171.
67. Delson E, (1980) Fossil macaques, phyletic relationships and a scenario of deployment. In: Lindburg DG, editors. The macaques: Studies in ecology, behaviour and evolution New York Van Nostrand Reinhold Company pp. 10-30.
68. Zalmout IS, Sanders WJ, MacLatchy LM, Gunnell GF, Al-Mufarreh YA, et al. (2010) New Oligocene primate from Saudi Arabia and the divergence of apes and Old World monkeys. Nature 466: 360-365.
69. Pozzi L, Hodgson JA, Burrell AS, Disotell TR, (2011) The stem catarrhine Saadanius does not inform the timing of the origin of crown catarrhines. J Hum Evol 61: 209-210.
70. Rambaut A, (2008) FigTree: Tree figure drawing tool, version 1.2.2. FigTree website. 18 Available: http://tree.bio.ed.ac.uk/software/figtree/. Accessed 2008 Dec.