Iron transport in the genus Marinobacter

BioMetals

Volumn 25, Issue 1, 2012, Pages 135-147

  Amin, Shady A ^a,b   Green, David H ^b   Waheeb, Dhuha Al ^c   Gärdes, Astrid ^a   Carrano, Carl J ^a  

^a SAN DIEGO STATE UNIVERSITY   (United States)

^b UNIVERSITY OF WASHINGTON   (United States)

^c SCOTTISH MARINE INSTITUTE   (United Kingdom)

Author keywords

Iron; Marinobacter; Siderophores; Transport

Indexed keywords

BACTERIAL PROTEIN; DEFEROXAMINE; MARINOBACTIN; PETROBACTIN; RNA 16S; SIDEROPHORE; UNCLASSIFIED DRUG; VIBRIOFERRIN; IRON;

ARTICLE; BACTERIAL GENETICS; BACTERIAL GENOME; BACTERIAL GROWTH; BACTERIUM IDENTIFICATION; CHEMOTAXONOMY; CONTROLLED STUDY; CULTURE MEDIUM; HYDROPHOBICITY; IRON TRANSPORT; MARINE ENVIRONMENT; MARINOBACTER; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROTEIN STRUCTURE; BACTERIAL GENE; CHEMICAL STRUCTURE; CHEMISTRY; CLASSIFICATION; GENETICS; METABOLISM; PHYSIOLOGY; TRANSPORT AT THE CELLULAR LEVEL; ULTRASTRUCTURE;

BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; MARINOBACTER;

BACTERIAL PROTEINS; BIOLOGICAL TRANSPORT; GENES, BACTERIAL; IRON; MARINOBACTER; MOLECULAR STRUCTURE; PHYLOGENY; SIDEROPHORES;

EID: 84861209473     PISSN: 09660844     EISSN: 15728773     Source Type: Journal    
DOI: 10.1007/s10534-011-9491-9     Document Type: Article

References (51)

1. Abergel RJ, Zawadzka AM, Raymond KN (2008) Petrobactinmediated iron transport in pathogenic bacteria: coordination chemistry of an unusual 3,4-catecholate/citrate siderophore. J Am Chem Soc 130:2124-2125
2. Alavi M, Miller T, Erlandson K, Schneider R, Belas R (2001) Bacterial community associated with Pfiesteria-like dinoflagellate cultures. Environ Microbiol 3:380-396
3. Amin SA, Küpper FC, Green DH, Harris WR, Carrano CJ (2007) Boron binding by a siderophore isolated from marine bacteria associated with the toxic dinoflagellate Gymnodinium catenatum. J Am Chem Soc 129:478-479
4. Amin SA, Green DH, Hart MC, Küpper FC, Sunda WG, Carrano CJ (2009) Photolysis of iron-siderophore chelates promotes bacterial-algal mutualism. Proc Natl Acad Sci USA 106:17071-17076
5. Amin SA, Green DH, Gärdes A, Romano A, Trimble L, Carrano CJ (2011) Siderophore-mediated iron uptake in two clades of Marinobacter spp. associated with phytoplankton: the role of light. BioMetals (submitted)
6. Azam F, Malfatti F (2007) Microbial structuring of marine ecosystems. Nat Rev Microbiol 5:782-791
7. Azam F, Worden AZ (2004) Oceanography: microbes, molecules, and marine ecosystems. Science 303:1622-1624
8. Barbeau K, Rue EL, Bruland KW, Butler A (2001) Photochemical cycling of iron in the surface ocean mediated by microbial iron(III)-binding ligands. Nature 413:409-413
9. Barbeau K, Zhang G, Live DH, Butler A (2002) Petrobactin, a photoreactive siderophore produced by the oil-degrading marine bacterium Marinobacter hydrocarbonoclasticus. J Am Chem Soc 124:378-379
10. Bell WH, Mitchell R (1972) Chemotactic and growth responses of marine bacteria to algal extracellular products. Biol Bull 143:265-277
11. Bell WH, Lang JM, Mitchell R (1974) Selective stimulation of marine bacteria by algal extracellular products. Limnol Oceanogr 19:833-839
12. Boye M, Nishioka Croot PL, Laan P, Timmermans KR, de Baar HJW (2005) Major deviations of iron complexation during 22 days of a mesoscale iron enrichment in the open Southern Ocean. Mar Chem 96:257-271
13. Bruland KW, Donat JR, Hutchins DA (1991) Interactive influences of bioactive trace metals on biological production in oceanic waters. Limnol Oceanogr 36: 1555-1577
14. Coale KH, Johnson KS, Fitzwater SE, Gordon RM, Tanner S, Chavez FP, Ferioli L, Sakamoto C, Rogers P, Millero F, Steinberg P, Nightingale P, Cooper D, Cochlan WP, Landry MR, Constantinou J, Rollwagen G, Trasvina A, Kudela R (1996) A massive phytoplankton bloom induced by an ecosystem-scale iron fertilization experiment in the equatorial Pacific Ocean. Nature 383:495-501
15. Desai P, Angerer A, Genco C (1996) Analysis of Fur binding to operator sequences within the Neisseria gonorrhoeae fbpA promoter. J Bacteriol 178:5020-5023
16. D'Onofrio A, Crawford JM, Stewart EJ, Witt K, Gavrish E, Epstein S, Clardy J, Lewis K (2010) Chem Biol 17:254-264
17. Duran R (2010) Marinobacter. In: Timmis KN (ed) Handbook of hydrocarbon and lipid microbiology. Springer-Verlag, Berlin, pp 1726-1735
18. Enz S, Braun V, Crosa JH (1995) Transcription of the region encoding the ferric dicitrate-transport system in Escherichia coli: similarity between promoters for fecA and for extracytoplasmic function sigma factors. Gene 163:13-18
19. Escolar L, Perez-Martin J, de Lorenzo V (1999) Opening the iron box: transcriptional metalloregulation by the Fur protein. J Bacteriol 181:6223-6229
20. Gärdes A, Iverson MH, Grossart HP, Passow U, Ullrich MS (2010) Diatom-Associated bacteria are required for aggregation of Thalassiosira weissflogii. ISME J 5(3): 436-445
21. Giovannoni SJ, Rappé MS (2000) Evolution, diversity, and molecular ecology of marine prokaryotes. In: Kirchman DL (ed) Microbial ecology of the oceans. Wiley, New York, pp 47-84
22. Glatz RE, Lepp PW, Ward BB, Francis CA (2006) Planktonic microbial community composition across steep physical/ chemical gradients in permanently ice-covered Lake Bonney, Antarctica. Geobiology 4:53-67
23. Gledhill M, van den Berg CMG (1994) Determination of complexation of iron(III) with natural organic complexing ligands in seawater using cathodic stripping voltammetry. Mar Chem 47:41-54
24. Green DH, Llewellyn LE, Negri AP, Blackburn SI, Bolch CJS (2004) Phylogenetic and functional diversity of the cultivable bacterial community associated with the paralytic shellfish poisoning dinoflagellate Gymnodinium catenatum. FEMS Microbiol Ecol 47:345-357
25. Guan LL, Kanoh K, Kamino K (2001) Effect of exogenous siderophores on iron uptake activity of marine bacteria under iron-limited conditions. Appl Environ Micro 67:1710-1717
26. Homann VV, Edwards KJ, Webb EA, Butler A (2009) Siderophores of Marinobacter aquaeolei: petrobactin and its sulfonated derivatives. Biometals 22:565-571
27. Hutchins DA, Frank VM, Brzezinski MA, Bruland KW (1999) Inducing phytoplankton iron limitation in iron-replete coastal waters with a strong chelating ligand. Limnol Oceanogr 44:1009-1018
28. Kaeppel EC, Gärdes A, Seebah S, Grossart HP, Ullrich MS (2011) Marinobacter adhaerens sp. nov., prominent in aggregate formation with the diatom Thalassiosira weissflogii. Int J Syst Evol Microbiol. doi:10.1099/ijs.0. 030189-0
29. Kammler M, Schon C, Hantke K (1993) Characterization of the ferrous iron uptake system of Escherichia coli. J Bacteriol 175:6212-6219
30. Kaye JZ, Sylvan JB, Edwards KJ, Baross JA (2011) Halomonas and Marinobacter ecotypes from hydrothermal vent, subseafloor and deep-sea environments. FEMS Microbiol Ecol 75:123-133
31. Köster W (2001) ABC transporter-mediated uptake of iron, siderophores, heme and vitamin B12. Res Microbiol 152:291-301
32. Küpper FC, Carrano CJ, Kuhn JU, Butler A (2006) Photoreactivity of iron(III)-aerobactin: photoproduct structure and iron(III) coordination. Inorg Chem 45:6028-6033
33. Lee JY, Janes BK, Passalacqua KD, Pfleger BF, Bergman NH, Liu H, Hakansson K, Somu RV, Aldrich CC, Cendrowski S, Hanna PC, Sherman DH (2007) Biosynthetic analysis of the petrobactin biosynthetic pathway from Bacillus anthracis. J Bact 189:1698-1710
34. Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar, Buchner A, Lai T, Steppi S, Jobb G, Förster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, König A, Liss T, Lüssmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis A, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode A, Schleifer KH (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32:1363-1371
35. Martin JS, Butler A (2007) Marine amphiplilic siderophores: marinobactin structure, uptake and microbial portioning. J Inorg Biochem 101:1692-1698
36. Martinez JS, Haygood MG, Butler A (2001) Identification of a natural desferrioxamine siderophore produced by a marine bacterium. Limnol Oceanogr 46:420-424
37. Martinez JS, Carter-Franklin JS, Mann EL, Martin JD, Haygood MG, Butler A (2003) Structure and membrane affinity of a suite of amphiphilic siderophores produced by a marine bacterium. Proc Natl Acad Sci USA 100: 3754-3759
38. Mawji E, Gledhill M, Milton JA, Zubkov MV, Thompson A, Wolff GA, Achterberg EP (2011) Production of siderophore type chelates in Atlantic Ocean waters enriched with different carbon and nitrogen sources. Mar Chem 124:90-99
39. Mey AR, Wyckoff EE, Kanukurthy V, Fisher CR, Payne SM (2005) Iron and Fur regulation in Vibrio cholerae and the role of Fur in virulence. Infect Immun 73:8167-8178
40. Rue EL, Bruland KW (1995) Complexation of iron(III) by natural organic ligands in the Central North Pacific as determined by a new competitive ligand equilibration/ adsorptive cathodic stripping voltammetric method. Mar Chem 50:117-138
41. Rue EL, Bruland KW (1997) The role of organic complexation on ambient iron chemistry in the equatorial Pacific Ocean and the response of a mesoscale iron addition experiment. Limnol Oceanogr 42:901-910
42. Sandy M, Butler A (2009) Microbial iron acquisition: marine and terrestrial siderophores. Chem Rev 109:4580-4595
43. Schwyn B, Neilands JB (1987) Universal chemical assay for the detection and determination of siderophores. Anal Biochem 160:47-56
44. Seibold A, Wichels A, Schütt C (2001) Diversity of endocytic bacteria in the dinoflagellate Noctiluca scintillans. Aquat Microb Ecol 25:229-235
45. Singer E, Webb EA, Nelson WC, Heidelberg JF, Ivanova N, Pati A, Edwards KJ (2011) Genomic Potential of Marinobacter aquaeolei, a biogeochemical opportunitroph. Appl Envi Micro 77:2763-2771
46. Tang YZ, Koch F, Gobler CJ (2010) Most HAB species are vitamin B1 and B12 auxotrophs. Proc Nat Acad Sci USA 107:20756-20761
47. Tortell PD, Maldonado MM, Granger J, Price NM (1999) Marine bacteria and biogeochemical cycling of iron in the oceans. FEMS Microbiol Ecol 29:1-11
48. Vraspir JM, Butler A (2009) Chemistry of marine ligands and siderophores. Annu Rev Mar Sci 1:43-63
49. Wilson MK, Abergel RJ, Raymond KN, Arceneaux JEL, Byers BR (2006) Siderophores of Bacillus anthrasis, cereus, and thuringiensis. Biochem Biophys Res Comm 384:320-325
50. Wu J, Luther GW (1995) Complexation of Fe(III) by natural organic ligands in the Northwest Atlantic Ocean by a competitive ligand equilibration method and a kinetic approach. Mar Chem 50:159-177
51. Wyckoff EE, Mey AR, Leimbach A, Fisher CF, Payne SM (2006) Characterization of ferric and ferrous iron transport systems in Vibrio cholerae. J Bact 188:6515-6523