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Volumn 107, Issue 1, 2012, Pages 28-35

In quest of the missing neuron: Spike sorting based on dominant-sets clustering

Author keywords

Dominant sets; Graph theoretic clustering; ISOMAP; Sparsely firing neuron

Indexed keywords

ACTIVE NEURONS; ALGORITHMIC PROCEDURE; DIMENSIONALITY REDUCTION; DOMINANT SET; EXTRACELLULAR SIGNALS; GRAPH-THEORETIC CLUSTERING; INFLUENCING FACTOR; ISOMAP; PERFORMANCE STANDARDS; SIMULATED DATA; SINGLE NEURON; SPIKE SORTING ALGORITHMS; SPIKE-SORTING;

EID: 84861184337     PISSN: 01692607     EISSN: 18727565     Source Type: Journal    
DOI: 10.1016/j.cmpb.2011.10.015     Document Type: Article
Times cited : (10)

References (39)
  • 1
    • 0034655813 scopus 로고    scopus 로고
    • Contribution of intrinsic and synaptic activities to the generation of neuronal discharges in vitro hippocampus
    • Cohen I., Miles R. Contribution of intrinsic and synaptic activities to the generation of neuronal discharges in vitro hippocampus. J. Physiol. 2000, 524(2):485-502.
    • (2000) J. Physiol. , vol.524 , Issue.2 , pp. 485-502
    • Cohen, I.1    Miles, R.2
  • 2
    • 33646174233 scopus 로고    scopus 로고
    • On the origin of the extracellular action potential waveform: a modeling study
    • Gold C., Henze D.A., Koch C., Buzsáki G. On the origin of the extracellular action potential waveform: a modeling study. J. Neurophysiol. 2006, 95(5):3113-3128.
    • (2006) J. Neurophysiol. , vol.95 , Issue.5 , pp. 3113-3128
    • Gold, C.1    Henze, D.A.2    Koch, C.3    Buzsáki, G.4
  • 3
    • 0012760765 scopus 로고
    • On-line separation of interleaved neuronal pulse sequences
    • Glaser E.M., Marks W.B. On-line separation of interleaved neuronal pulse sequences. Data Acquis. Process Biol. Med. 1968, 5:137-156.
    • (1968) Data Acquis. Process Biol. Med. , vol.5 , pp. 137-156
    • Glaser, E.M.1    Marks, W.B.2
  • 4
    • 0017485225 scopus 로고    scopus 로고
    • Multispike train analysis
    • Abeles M., Goldstein M.H. Multispike train analysis. Proc. IEEE 1997, 65:762-773.
    • (1997) Proc. IEEE , vol.65 , pp. 762-773
    • Abeles, M.1    Goldstein, M.H.2
  • 5
    • 0034666384 scopus 로고    scopus 로고
    • Spike sorting based on discrete wavelet transform coefficients
    • Letelier J.C., Weber P.P. Spike sorting based on discrete wavelet transform coefficients. J. Neurosci. Methods 2000, 101(2):93-106.
    • (2000) J. Neurosci. Methods , vol.101 , Issue.2 , pp. 93-106
    • Letelier, J.C.1    Weber, P.P.2
  • 6
    • 0037198369 scopus 로고    scopus 로고
    • A method for spike sorting and detection based on wavelet packets and Shannon's mutual information
    • Hulata E., Segev R., Ben-Jacob E. A method for spike sorting and detection based on wavelet packets and Shannon's mutual information. J. Neurosci. Methods 2002, 117(1):1-12.
    • (2002) J. Neurosci. Methods , vol.117 , Issue.1 , pp. 1-12
    • Hulata, E.1    Segev, R.2    Ben-Jacob, E.3
  • 7
    • 3042526258 scopus 로고    scopus 로고
    • Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering
    • Quian Quiroga R., Nadasdy Z., Ben-Shaul Y. Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering. Neural Comput. 2004, 16(8):1661-1687.
    • (2004) Neural Comput. , vol.16 , Issue.8 , pp. 1661-1687
    • Quian Quiroga, R.1    Nadasdy, Z.2    Ben-Shaul, Y.3
  • 9
    • 0013130627 scopus 로고    scopus 로고
    • A review of methods for spike sorting: the detection and classification of neural action potentials
    • Lewicki M. A review of methods for spike sorting: the detection and classification of neural action potentials. Netw. Comput. Neural Syst. 1998, 9:R53-R78.
    • (1998) Netw. Comput. Neural Syst. , vol.9
    • Lewicki, M.1
  • 10
    • 0033928411 scopus 로고    scopus 로고
    • G accuracy of tetrode spike separation as determined by simultaneous intracellular and extracellular measurements
    • Harris K.D., Henze D.A., Csicsvari J., Hirase H., Buzsaki G. G accuracy of tetrode spike separation as determined by simultaneous intracellular and extracellular measurements. J. Neurophysiol. 2000, 84(1):401-414.
    • (2000) J. Neurophysiol. , vol.84 , Issue.1 , pp. 401-414
    • Harris, K.D.1    Henze, D.A.2    Csicsvari, J.3    Hirase, H.4    Buzsaki, G.5
  • 11
    • 0037207286 scopus 로고    scopus 로고
    • Using noise signature to optimize spike-sorting and to assess neuronal classification quality
    • Pouzat C., Mazor O., Laurent G. Using noise signature to optimize spike-sorting and to assess neuronal classification quality. J. Neurosci. Methods 2002, 122(1):43-57.
    • (2002) J. Neurosci. Methods , vol.122 , Issue.1 , pp. 43-57
    • Pouzat, C.1    Mazor, O.2    Laurent, G.3
  • 12
    • 0030480277 scopus 로고    scopus 로고
    • Variability of extracellular spike waveforms of cortical neurons
    • Fee M.S., Mitra P.P., Kleinfeld D. Variability of extracellular spike waveforms of cortical neurons. J. Neurophysiol. 1996, 76(6):3823-3833.
    • (1996) J. Neurophysiol. , vol.76 , Issue.6 , pp. 3823-3833
    • Fee, M.S.1    Mitra, P.P.2    Kleinfeld, D.3
  • 13
    • 33748313143 scopus 로고    scopus 로고
    • Spike sorting: Bayesian clustering of non-stationary data
    • Bar-Hillel A., Spiro A., Stark E. Spike sorting: Bayesian clustering of non-stationary data. J. Neurosci. Methods 2006, 157(2):303-316.
    • (2006) J. Neurosci. Methods , vol.157 , Issue.2 , pp. 303-316
    • Bar-Hillel, A.1    Spiro, A.2    Stark, E.3
  • 14
    • 0036133948 scopus 로고    scopus 로고
    • Unitary events in multiple single-neuron spiking activity: II. Nonstationary data
    • Grün S., Diesmann M., Aertsen A. Unitary events in multiple single-neuron spiking activity: II. Nonstationary data. Neural Comput. 2002, 14(1):81-119.
    • (2002) Neural Comput. , vol.14 , Issue.1 , pp. 81-119
    • Grün, S.1    Diesmann, M.2    Aertsen, A.3
  • 15
    • 0037389201 scopus 로고    scopus 로고
    • Automatic sorting for multi-neuronal activity recorded with tetrodes in the presence of overlapping spikes
    • Takahashi S., Anzai Y., Sakurai Y. Automatic sorting for multi-neuronal activity recorded with tetrodes in the presence of overlapping spikes. J. Neurophysiol. 2003, 89(4):2245-2258.
    • (2003) J. Neurophysiol. , vol.89 , Issue.4 , pp. 2245-2258
    • Takahashi, S.1    Anzai, Y.2    Sakurai, Y.3
  • 16
    • 0030297850 scopus 로고    scopus 로고
    • Automatic sorting of multiple unit neuronal signals in the presence of anisotropic and non-Gaussian variability
    • Fee M.S., Mitra P.P., Kleinfeld D. Automatic sorting of multiple unit neuronal signals in the presence of anisotropic and non-Gaussian variability. J. Neurosci. Methods 1996, 69(2):175-188.
    • (1996) J. Neurosci. Methods , vol.69 , Issue.2 , pp. 175-188
    • Fee, M.S.1    Mitra, P.P.2    Kleinfeld, D.3
  • 18
    • 77956931641 scopus 로고    scopus 로고
    • An online spike detection and spike classification algorithm capable of instantaneous resolution of overlapping spikes
    • Franke F., Natora M., Boucsein C., Munk M.H., Obermayer K. An online spike detection and spike classification algorithm capable of instantaneous resolution of overlapping spikes. J. Comput. Neurosci. 2010, 29(1-2):127-148.
    • (2010) J. Comput. Neurosci. , vol.29 , Issue.1-2 , pp. 127-148
    • Franke, F.1    Natora, M.2    Boucsein, C.3    Munk, M.H.4    Obermayer, K.5
  • 19
    • 0037026530 scopus 로고    scopus 로고
    • An ultra-sparse code underlies the generation of neural sequences in a songbird
    • Hahnloser R.H., Kozhevnikov A.A., Fee M.S. An ultra-sparse code underlies the generation of neural sequences in a songbird. Nature 2002, 419(6902):65-70.
    • (2002) Nature , vol.419 , Issue.6902 , pp. 65-70
    • Hahnloser, R.H.1    Kozhevnikov, A.A.2    Fee, M.S.3
  • 22
    • 21344435992 scopus 로고    scopus 로고
    • Invariant visual representation by single neurons in the human brain
    • Quian Quiroga R., Reddy L., Kreiman G., Koch C., Fried I. Invariant visual representation by single neurons in the human brain. Nature 2005, 435(7045):1102-1107.
    • (2005) Nature , vol.435 , Issue.7045 , pp. 1102-1107
    • Quian Quiroga, R.1    Reddy, L.2    Kreiman, G.3    Koch, C.4    Fried, I.5
  • 23
    • 35348880916 scopus 로고    scopus 로고
    • Decoding visual inputs from multiple neurons in the human temporal lobe
    • Quian Quiroga R., Reddy L., Koch C., Fried I. Decoding visual inputs from multiple neurons in the human temporal lobe. J. Neurophysiol. 2007, 98(4):1997-2007.
    • (2007) J. Neurophysiol. , vol.98 , Issue.4 , pp. 1997-2007
    • Quian Quiroga, R.1    Reddy, L.2    Koch, C.3    Fried, I.4
  • 25
    • 0034704229 scopus 로고    scopus 로고
    • A global geometric framework for nonlinear dimensionality reduction
    • Tenenbaum J.B., de Silva V., Langford J.C. A global geometric framework for nonlinear dimensionality reduction. Science 2000, 290(5500):2319-2323.
    • (2000) Science , vol.290 , Issue.5500 , pp. 2319-2323
    • Tenenbaum, J.B.1    de Silva, V.2    Langford, J.C.3
  • 27
    • 0036340271 scopus 로고    scopus 로고
    • Semantic geodesic maps: a unifying geometrical approach for studying the structure and dynamics of single trial evoked responses
    • Laskaris N.A., Ioannides A.A. Semantic geodesic maps: a unifying geometrical approach for studying the structure and dynamics of single trial evoked responses. Clin. Neurophysiol. 2002, 113(8):1209-1226.
    • (2002) Clin. Neurophysiol. , vol.113 , Issue.8 , pp. 1209-1226
    • Laskaris, N.A.1    Ioannides, A.A.2
  • 28
    • 77953714710 scopus 로고    scopus 로고
    • NASS: an empirical approach to spike sorting with overlap resolution based on a hybrid noise-assisted methodology
    • Adamos D.A., Laskaris N.A., Kosmidis E.K., Theophilidis G. NASS: an empirical approach to spike sorting with overlap resolution based on a hybrid noise-assisted methodology. J. Neurosci. Methods 2010, 190(1):129-142.
    • (2010) J. Neurosci. Methods , vol.190 , Issue.1 , pp. 129-142
    • Adamos, D.A.1    Laskaris, N.A.2    Kosmidis, E.K.3    Theophilidis, G.4
  • 29
    • 34250633992 scopus 로고    scopus 로고
    • Automated spike sorting using density grid contour clustering and subtractive waveform decomposition
    • Vargas-Irwin C., Donoghue J.P. Automated spike sorting using density grid contour clustering and subtractive waveform decomposition. J. Neurosci. Methods 2007, 164(1):1-18.
    • (2007) J. Neurosci. Methods , vol.164 , Issue.1 , pp. 1-18
    • Vargas-Irwin, C.1    Donoghue, J.P.2
  • 30
    • 33744998689 scopus 로고    scopus 로고
    • A robust method for spike sorting with automatic overlap decomposition
    • Wang G.L., Zhou Y., Chen A.H., Zhang P.M., Liang P.J. A robust method for spike sorting with automatic overlap decomposition. IEEE Trans. Biomed. Eng. 2006, 53(6):1195-1198.
    • (2006) IEEE Trans. Biomed. Eng. , vol.53 , Issue.6 , pp. 1195-1198
    • Wang, G.L.1    Zhou, Y.2    Chen, A.H.3    Zhang, P.M.4    Liang, P.J.5
  • 31
    • 0029307534 scopus 로고
    • De-noising by soft-thresholding
    • Donoho D.L. De-noising by soft-thresholding. IEEE Trans. Inf. Theory 1995, 41(3):613-627.
    • (1995) IEEE Trans. Inf. Theory , vol.41 , Issue.3 , pp. 613-627
    • Donoho, D.L.1
  • 32
    • 0032888084 scopus 로고    scopus 로고
    • A 100-channel system for real time detection and storage of extracellular spike waveforms
    • Guillory K.S., Normann R.A. A 100-channel system for real time detection and storage of extracellular spike waveforms. J. Neurosci. Methods 1999, 91(1-2):21-29.
    • (1999) J. Neurosci. Methods , vol.91 , Issue.1-2 , pp. 21-29
    • Guillory, K.S.1    Normann, R.A.2
  • 33
    • 3042794568 scopus 로고    scopus 로고
    • The action of the insecticide imidacloprid on the respiratory rhythm of an insect: the beetle Tenebrio molitor
    • Zafeiridou G., Theophilidis G. The action of the insecticide imidacloprid on the respiratory rhythm of an insect: the beetle Tenebrio molitor. Neurosci. Lett. 2004, 365(3):205-209.
    • (2004) Neurosci. Lett. , vol.365 , Issue.3 , pp. 205-209
    • Zafeiridou, G.1    Theophilidis, G.2
  • 34
    • 0023837926 scopus 로고
    • Neurons without demonstrable receptive fields outnumber neurons having receptive fields in samples from the somatosensory cortex of anesthetized or paralyzed cats and rats
    • Dykes R., Lamour Y. Neurons without demonstrable receptive fields outnumber neurons having receptive fields in samples from the somatosensory cortex of anesthetized or paralyzed cats and rats. Brain Res. 1988, 440(1):133-143.
    • (1988) Brain Res. , vol.440 , Issue.1 , pp. 133-143
    • Dykes, R.1    Lamour, Y.2
  • 35
    • 0015470611 scopus 로고
    • Single units and sensation: a neuron doctrine for perceptual psychology?
    • Barlow H.B. Single units and sensation: a neuron doctrine for perceptual psychology?. Perception 1972, 1(4):371-394.
    • (1972) Perception , vol.1 , Issue.4 , pp. 371-394
    • Barlow, H.B.1
  • 37
    • 26844479031 scopus 로고    scopus 로고
    • Directed visual attention and the dynamic control of information flow
    • Elsevier, San Diego California, L. Itti, G. Rees, J. Tsotsos (Eds.)
    • Anderson C.H., van Essen D.C., Olshausen B.A. Directed visual attention and the dynamic control of information flow. Neurobiology of attention 2005, 11-17. Elsevier, San Diego California. L. Itti, G. Rees, J. Tsotsos (Eds.).
    • (2005) Neurobiology of attention , pp. 11-17
    • Anderson, C.H.1    van Essen, D.C.2    Olshausen, B.A.3
  • 39
    • 38049002082 scopus 로고    scopus 로고
    • Behavioural report of single neuron stimulation in somatosensory cortex
    • Houweling A.R., Brecht M. Behavioural report of single neuron stimulation in somatosensory cortex. Nature 2008, 451(7174):65-68.
    • (2008) Nature , vol.451 , Issue.7174 , pp. 65-68
    • Houweling, A.R.1    Brecht, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.