메뉴 건너뛰기




Volumn 78, Issue 7, 2012, Pages 2367-2375

Phylogeny and population structure of brown rot- and Moko disease-causing strains of Ralstonia solanacearum phylotype II

Author keywords

[No Author keywords available]

Indexed keywords

BROWN ROT; COMPARATIVE GENOMIC HYBRIDIZATIONS; DIAGNOSTIC TOOLS; PHYLOTYPES; PLANT SPECIES; POPULATION STRUCTURES; RALSTONIA SOLANACEARUM;

EID: 84861162344     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.06123-11     Document Type: Article
Times cited : (34)

References (45)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul SF, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 2
    • 0000628762 scopus 로고
    • Biological and physiological aspects of bacterial wilt caused by Pseudomonas solanacearum
    • Buddenhagen I, Kelman A. 1964. Biological and physiological aspects of bacterial wilt caused by Pseudomonas solanacearum. Annu. Rev. Phytopathol. 2:203-230.
    • (1964) Annu. Rev. Phytopathol. , vol.2 , pp. 203-230
    • Buddenhagen, I.1    Kelman, A.2
  • 4
    • 0005716689 scopus 로고
    • Bacterial wilt revisited
    • Persley GJ, et al (ed), Los Baños, Philippines, 8 to 10 October 1985 ACIAR proceedings no. 13. Australian Centre for International Agricultural Research, Canberra, Australia
    • Buddenhagen IW. 1986. Bacterial wilt revisited. In Persley GJ, et al (ed), Bacterial wilt disease in Asia and the South Pacific: proceedings of an international workshop held at PCARRD, Los Baños, Philippines, 8 to 10 October 1985, p. 126-143. ACIAR proceedings no. 13. Australian Centre for International Agricultural Research, Canberra, Australia.
    • (1986) Bacterial wilt disease in Asia and the South Pacific: proceedings of an international workshop held at PCARRD , pp. 126-143
    • Buddenhagen, I.W.1
  • 5
    • 78149394492 scopus 로고    scopus 로고
    • Deciphering phenotypic diversity of Ralstonia solanacearum strains pathogenic to potato
    • Cellier G, Prior P. 2010. Deciphering phenotypic diversity of Ralstonia solanacearum strains pathogenic to potato. Phytopathology 100:1250-1261.
    • (2010) Phytopathology , vol.100 , pp. 1250-1261
    • Cellier, G.1    Prior, P.2
  • 6
    • 4544261484 scopus 로고    scopus 로고
    • Simple sequence repeats and compositional bias in the bipartite Ralstonia solanacearum GMI1000 genome
    • Coenye T, Vandamme P. 2003. Simple sequence repeats and compositional bias in the bipartite Ralstonia solanacearum GMI1000 genome. BMC Genomics 4:10.
    • (2003) BMC Genomics , vol.4 , pp. 10
    • Coenye, T.1    Vandamme, P.2
  • 7
    • 34247884459 scopus 로고    scopus 로고
    • A systematics for discovering the fundamental units of bacterial diversity
    • Cohan FM, Perry EB. 2007. A systematics for discovering the fundamental units of bacterial diversity. Curr. Biol. 17:R373-R386.
    • (2007) Curr. Biol. , vol.17
    • Cohan, F.M.1    Perry, E.B.2
  • 8
    • 0000020758 scopus 로고
    • Genetic diversity of Pseudomonas solanacearum: detection of restriction fragment polymorphisms with DNA probes that specify virulence and hypersensitive response
    • Cook D, Barlow E, Sequeira L. 1989. Genetic diversity of Pseudomonas solanacearum: detection of restriction fragment polymorphisms with DNA probes that specify virulence and hypersensitive response. Mol. Plant Microbe Interact. 2:113-121.
    • (1989) Mol. Plant Microbe Interact. , vol.2 , pp. 113-121
    • Cook, D.1    Barlow, E.2    Sequeira, L.3
  • 9
    • 0001945527 scopus 로고
    • Strain differentiation of Pseudomonas solanacearum by molecular genetic methods
    • Hayward AC, Hartman GL (ed). CAB International, Wallingford, United Kingdom
    • Cook D, Sequeira L. 1994. Strain differentiation of Pseudomonas solanacearum by molecular genetic methods, p 77-93. In Hayward AC, Hartman GL (ed), Bacterial wilt: the disease and its causative agent, Pseudomonas solanacearum. CAB International, Wallingford, United Kingdom.
    • (1994) Bacterial wilt: the disease and its causative agent, Pseudomonas solanacearum , pp. 77-93
    • Cook, D.1    Sequeira, L.2
  • 10
    • 0012133181 scopus 로고
    • Diversity of Pseudomonas solanacearum and related bacteria in South East Asia: new direction for Moko disease
    • Hayward AC, Hartman GL (ed) CAB International, Wallingford, United Kingdom
    • Eden-Green SJ. 1994. Diversity of Pseudomonas solanacearum and related bacteria in South East Asia: new direction for Moko disease, p 25-34. In Hayward AC, Hartman GL (ed), Bacterial wilt: the disease and its causative organism, Pseudomonas solanacearum. CAB International, Wallingford, United Kingdom.
    • (1994) Bacterial wilt: the disease and its causative organism, Pseudomonas solanacearum , pp. 25-34
    • Eden-Green, S.J.1
  • 11
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
    • Evanno G, Regnaut S, Goudet J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14:2611-2620.
    • (2005) Mol. Ecol. , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 12
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK. 2003. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164:1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 13
    • 18444396791 scopus 로고    scopus 로고
    • How complex is the "Ralstonia solanacearum species complex
    • Allen C, Prior P, Hayward AC (ed). APS Press, St. Paul, MN
    • Fegan M, Prior P. 2005. How complex is the "Ralstonia solanacearum species complex," p 449-461. In Allen C, Prior P, Hayward AC (ed), Bacterial wilt disease and the Ralstonia solanacearum species complex. APS Press, St. Paul, MN.
    • (2005) Bacterial wilt disease and the Ralstonia solanacearum species complex , pp. 449-461
    • Fegan, M.1    Prior, P.2
  • 14
    • 0001899220 scopus 로고    scopus 로고
    • Phylogeny, diversity and molecular diagnostics of Ralstonia solanacearum
    • Prior P, Allen C, Elphinstone J (ed). INRA Editions, Paris, France
    • Fegan M, Taghavi M, Sly LI, Hayward AC. 1998. Phylogeny, diversity and molecular diagnostics of Ralstonia solanacearum, p 19-33. In Prior P, Allen C, Elphinstone J (ed), Bacterial wilt disease: molecular and ecological aspects. INRA Editions, Paris, France.
    • (1998) Bacterial wilt disease: molecular and ecological aspects
    • Fegan, M.1    Taghavi, M.2    Sly, L.I.3    Hayward, A.C.4
  • 15
    • 4744374965 scopus 로고    scopus 로고
    • Lessons learned from the genome analysis of Ralstonia solanacearum
    • Genin S, Boucher C. 2004. Lessons learned from the genome analysis of Ralstonia solanacearum. Annu. Rev. Phytopathol. 42:107-134.
    • (2004) Annu. Rev. Phytopathol. , vol.42 , pp. 107-134
    • Genin, S.1    Boucher, C.2
  • 17
    • 82555176527 scopus 로고    scopus 로고
    • Detection and functional characterization of a large genomic deletion resulting in decreased pathogenicity in Ralstonia solanacearum race 3 biovar 2 strains
    • Gonzalez A, Plener L, Restrepo S, Boucher C, Genin S. 2011. Detection and functional characterization of a large genomic deletion resulting in decreased pathogenicity in Ralstonia solanacearum race 3 biovar 2 strains. Environ. Microbiol. 13:3172-3185.
    • (2011) Environ. Microbiol. , vol.13 , pp. 3172-3185
    • Gonzalez, A.1    Plener, L.2    Restrepo, S.3    Boucher, C.4    Genin, S.5
  • 18
    • 67349210007 scopus 로고    scopus 로고
    • Horizontal gene transfer between Ralstonia solanacearum strains detected by comparative genomic hybridization on microarrays
    • Guidot A, Coupat B, Fall S, Prior P, Bertolla F. 2009. Horizontal gene transfer between Ralstonia solanacearum strains detected by comparative genomic hybridization on microarrays. ISME J. 3:549-562.
    • (2009) ISME J , vol.3 , pp. 549-562
    • Guidot, A.1    Coupat, B.2    Fall, S.3    Prior, P.4    Bertolla, F.5
  • 19
    • 33846223844 scopus 로고    scopus 로고
    • Genomic structure and phylogeny of the plant pathogen Ralstonia solanacearum inferred from gene distribution analysis
    • Guidot A, et al. 2007. Genomic structure and phylogeny of the plant pathogen Ralstonia solanacearum inferred from gene distribution analysis. J. Bacteriol. 189:377-387.
    • (2007) J. Bacteriol. , vol.189 , pp. 377-387
    • Guidot, A.1
  • 20
    • 0006174507 scopus 로고
    • Biology and epidemiology of bacterial wilt caused by Pseudomonas solanacearum
    • Hayward AC. 1991. Biology and epidemiology of bacterial wilt caused by Pseudomonas solanacearum. Annu. Rev. Phytopathol. 29:67-87.
    • (1991) Annu. Rev. Phytopathol. , vol.29 , pp. 67-87
    • Hayward, A.C.1
  • 21
    • 0002419562 scopus 로고
    • The hosts of Pseudomonas solanacearum
    • Hayward AC, Hartman GL (ed). CAB International, Wallingford, United Kingdom
    • Hayward AC. 1994. The hosts of Pseudomonas solanacearum, p 9-24. In Hayward AC, Hartman GL (ed), Bacterial wilt: the disease and its causative agent, Pseudomonas solanacearum. CAB International, Wallingford, United Kingdom.
    • (1994) Bacterial wilt: the disease and its causative agent, Pseudomonas solanacearum , pp. 9-24
    • Hayward, A.C.1
  • 22
    • 36849073678 scopus 로고    scopus 로고
    • Sequencing breakthroughs for genomic ecology and evolutionary biology
    • Hudson ME. 2008. Sequencing breakthroughs for genomic ecology and evolutionary biology. Mol. Ecol. Res. 8:3-17.
    • (2008) Mol. Ecol. Res. , vol.8 , pp. 3-17
    • Hudson, M.E.1
  • 23
    • 78149402444 scopus 로고    scopus 로고
    • Potato brown rot in western Europe-history, present occurrence and some remarks on possible origin
    • Janse JD. 1996. Potato brown rot in western Europe-history, present occurrence and some remarks on possible origin. EPPO Bull. 26:17.
    • (1996) EPPO Bull , vol.26 , pp. 17
    • Janse, J.D.1
  • 24
    • 34748868431 scopus 로고    scopus 로고
    • Detecting population structure using STRUCTURE software: effect of background linkage disequilibrium
    • Kaeuffer R, Reale D, Coltman DW, Pontier D. 2007. Detecting population structure using STRUCTURE software: effect of background linkage disequilibrium. Heredity (Edinb.) 99:374-380.
    • (2007) Heredity (Edinb.) , vol.99 , pp. 374-380
    • Kaeuffer, R.1    Reale, D.2    Coltman, D.W.3    Pontier, D.4
  • 25
    • 70449669048 scopus 로고    scopus 로고
    • Broad diversity of Ralstonia solanacearum strains in Cameroon
    • Mahbou Somo Toukam G, et al. 2009. Broad diversity of Ralstonia solanacearum strains in Cameroon. Plant Dis. 93:1123-1130.
    • (2009) Plant Dis , vol.93 , pp. 1123-1130
    • Mahbou Somo Toukam, G.1
  • 26
    • 0034486121 scopus 로고    scopus 로고
    • Partial sequencing of the hrpB and endoglucanase genes confirms and expands the known diversity within the Ralstonia solanacearum species complex
    • Poussier S, Prior P, Luisetti J, Hayward C, Fegan M. 2000. Partial sequencing of the hrpB and endoglucanase genes confirms and expands the known diversity within the Ralstonia solanacearum species complex. Syst. Appl. Microbiol. 23:479-486.
    • (2000) Syst. Appl. Microbiol. , vol.23 , pp. 479-486
    • Poussier, S.1    Prior, P.2    Luisetti, J.3    Hayward, C.4    Fegan, M.5
  • 27
    • 0033941359 scopus 로고    scopus 로고
    • Genetic diversity of Ralstonia solanacearum as assessed by PCR-RFLP of the hrp gene region, AFLP and 16S rRNA sequence analysis, and identification of an African subdivision
    • Poussier S, et al. 2000. Genetic diversity of Ralstonia solanacearum as assessed by PCR-RFLP of the hrp gene region, AFLP and 16S rRNA sequence analysis, and identification of an African subdivision. Microbiology 146(Pt 7):1679-1692.
    • (2000) Microbiology , vol.146 , Issue.PART 7 , pp. 1679-1692
    • Poussier, S.1
  • 28
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 29
    • 70149113077 scopus 로고    scopus 로고
    • R Development Core Team. R Foundation for Statistical Computing, Vienna, Austria
    • R Development Core Team. 2009. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www.R-project.org.
    • (2009) R: a language and environment for statistical computing
  • 30
    • 77954582930 scopus 로고    scopus 로고
    • Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence
    • Remenant B, et al. 2010. Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence. BMC Genomics 11:379.
    • (2010) BMC Genomics , vol.11 , pp. 379
    • Remenant, B.1
  • 31
    • 0037203829 scopus 로고    scopus 로고
    • Genome sequence of the plant pathogen Ralstonia solanacearum
    • Salanoubat M, et al. 2002. Genome sequence of the plant pathogen Ralstonia solanacearum. Nature 415:497-502.
    • (2002) Nature , vol.415 , pp. 497-502
    • Salanoubat, M.1
  • 32
    • 0001268552 scopus 로고
    • A reliable data-based bandwidth selection method for kernel density estimation
    • Sheather SJ, Jones MC. 1991. A reliable data-based bandwidth selection method for kernel density estimation. J. R. Stat. Soc. Ser. B Stat. Methodol. 53:683-690.
    • (1991) J. R. Stat. Soc. Ser. B Stat. Methodol. , vol.53 , pp. 683-690
    • Sheather, S.J.1    Jones, M.C.2
  • 33
    • 0003994910 scopus 로고
    • Chapman and Hall, London, United Kingdom
    • Silverman BW. 1986. Density estimation. Chapman and Hall, London, United Kingdom.
    • (1986) Density estimation
    • Silverman, B.W.1
  • 34
    • 0345062474 scopus 로고    scopus 로고
    • Genetic diversity amongst Ralstonia solanacearum isolates of potato in Europe
    • Smith JJ, et al. 1998. Genetic diversity amongst Ralstonia solanacearum isolates of potato in Europe. EPPO Bull. 28:83-84.
    • (1998) EPPO Bull , vol.28 , pp. 83-84
    • Smith, J.J.1
  • 35
    • 33751258603 scopus 로고    scopus 로고
    • The bacterial species dilemma and the genomicphylogenetic species concept
    • Staley JT. 2006. The bacterial species dilemma and the genomicphylogenetic species concept. Philos. Trans. R. Soc. Lond. B Biol. Sci. 361:1899-1909.
    • (2006) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.361 , pp. 1899-1909
    • Staley, J.T.1
  • 36
    • 0030034206 scopus 로고    scopus 로고
    • Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomo-nas syzygii, and the blood disease bacterium of banana based on 16S rRNA gene sequences
    • Taghavi M, Hayward C, Sly LI, Fegan M. 1996. Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomo-nas syzygii, and the blood disease bacterium of banana based on 16S rRNA gene sequences. Int. J. Syst. Bacteriol. 46:10-15.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 10-15
    • Taghavi, M.1    Hayward, C.2    Sly, L.I.3    Fegan, M.4
  • 37
    • 0033054302 scopus 로고    scopus 로고
    • RAPD and rep PCR-based fingerprinting of vascular bacterial pathogens of Musa spp
    • Thwaites R, Mansfield J, Eden-Green S, Seal S. 1999. RAPD and rep PCR-based fingerprinting of vascular bacterial pathogens of Musa spp. Plant Pathol. 48:121-128.
    • (1999) Plant Pathol , vol.48 , pp. 121-128
    • Thwaites, R.1    Mansfield, J.2    Eden-Green, S.3    Seal, S.4
  • 38
    • 0035544408 scopus 로고    scopus 로고
    • Strain characterization and 16S-23S probe development for differentiating geographically dispersed isolates of the phytopathogen Ralstonia solanacearum
    • Timms-Wilson TM, Bryant K, Bailey MJ. 2001. Strain characterization and 16S-23S probe development for differentiating geographically dispersed isolates of the phytopathogen Ralstonia solanacearum. Environ. Microbiol. 3:785-797.
    • (2001) Environ. Microbiol. , vol.3 , pp. 785-797
    • Timms-Wilson, T.M.1    Bryant, K.2    Bailey, M.J.3
  • 39
    • 0002827905 scopus 로고    scopus 로고
    • Genetic diversity of Ralstonia solanacearum race 3 in Western Europe determined by AFLP, RC-PFGE and Rep-PCR
    • Prior P, Allen C, Elphinstone J (ed). Springer-Verlag, Berlin, Germany
    • van der Wolf JM, et al. 1998. Genetic diversity of Ralstonia solanacearum race 3 in Western Europe determined by AFLP, RC-PFGE and Rep-PCR, p 44-49. In Prior P, Allen C, Elphinstone J (ed), Bacterial wilt disease: molecular and ecological aspects. Springer-Verlag, Berlin, Germany.
    • (1998) Bacterial wilt disease: molecular and ecological aspects , pp. 44-49
    • van der Wolf, J.M.1
  • 40
    • 1842423292 scopus 로고    scopus 로고
    • Wautersia gen. nov., a novel genus accommodating the phylogenetic lineage including Ralstonia eutropha and related species, and proposal of Ralstonia [Pseudomonas] syzygii (Roberts et al. 1990) comb. nov
    • Vaneechoutte M, Kämpfer P, De Baere T, Falsen E, Verschraegen G. 2004. Wautersia gen. nov., a novel genus accommodating the phylogenetic lineage including Ralstonia eutropha and related species, and proposal of Ralstonia [Pseudomonas] syzygii (Roberts et al. 1990) comb. nov. Int. J. Syst. Evol. Microbiol. 54:317-327.
    • (2004) Int. J. Syst. Evol. Microbiol. , vol.54 , pp. 317-327
    • Vaneechoutte, M.1    Kämpfer, P.2    De Baere, T.3    Falsen, E.4    Verschraegen, G.5
  • 41
    • 17644374057 scopus 로고    scopus 로고
    • Phylogenetic relationships of Ralstonia solanacearum species complex strains from Asia and other continents based on 16S rDNA, endoglucanase, and hrpB gene sequences
    • Villa JE, et al. 2005. Phylogenetic relationships of Ralstonia solanacearum species complex strains from Asia and other continents based on 16S rDNA, endoglucanase, and hrpB gene sequences. J. Gen. Plant Pathol. 71:39-46.
    • (2005) J. Gen. Plant Pathol. , vol.71 , pp. 39-46
    • Villa, J.E.1
  • 42
    • 35948930257 scopus 로고    scopus 로고
    • Ralstonia solanacearum strains from Martinique (French West Indies) exhibiting a new pathogenic potential
    • Wicker E, et al. 2007. Ralstonia solanacearum strains from Martinique (French West Indies) exhibiting a new pathogenic potential. Appl. Environ. Microbiol. 73:6790-6801.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 6790-6801
    • Wicker, E.1
  • 43
    • 70249101399 scopus 로고    scopus 로고
    • Epidemiological evidence for the emergence of a new pathogenic variant of Ralstonia solanacearum in Martinique (French West Indies)
    • Wicker E, Grassart L, Coranson-Beaudu R, Mian D, Prior P. 2009. Epidemiological evidence for the emergence of a new pathogenic variant of Ralstonia solanacearum in Martinique (French West Indies). Plant Pathol. 58:853-861.
    • (2009) Plant Pathol , vol.58 , pp. 853-861
    • Wicker, E.1    Grassart, L.2    Coranson-Beaudu, R.3    Mian, D.4    Prior, P.5
  • 44
    • 84859894446 scopus 로고    scopus 로고
    • Contrasting recombination patterns and demographic histories of the plant pathogen Ralstonia solanacearum inferred from MLSA
    • 17 November 2011 [Epub ahead of print.] doi: 10.1038/ismej.160
    • Wicker E, et al. 17 November 2011. Contrasting recombination patterns and demographic histories of the plant pathogen Ralstonia solanacearum inferred from MLSA. ISME J. [Epub ahead of print.] doi:10.1038/ismej.2011.160.
    • (2011) ISME J
    • Wicker, E.1
  • 45
    • 0028850433 scopus 로고
    • Transfer of two Burkholderia and an Alcaligenes species to Ralstonia gen. nov.: proposal of Ralstonia pickettii (Ralston, Palleroni and Doudoroff 1973) comb. nov., Ralstonia solanacearum (Smith 1896) comb. nov. and Ralstonia eutropha (Davis 1969) comb. nov
    • Yabuuchi E, Kosako Y, Yano I, Hotta H, Nishiuchi Y. 1995. Transfer of two Burkholderia and an Alcaligenes species to Ralstonia gen. nov.: proposal of Ralstonia pickettii (Ralston, Palleroni and Doudoroff 1973) comb. nov., Ralstonia solanacearum (Smith 1896) comb. nov. and Ralstonia eutropha (Davis 1969) comb. nov. Microbiol. Immunol. 39:897-904.
    • (1995) Microbiol. Immunol. , vol.39 , pp. 897-904
    • Yabuuchi, E.1    Kosako, Y.2    Yano, I.3    Hotta, H.4    Nishiuchi, Y.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.