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Volumn 78, Issue 7, 2012, Pages 2147-2153

Behavior and target site selection of conjugative transposon Tn916 in two different strains of toxigenic Clostridium difficile

Author keywords

[No Author keywords available]

Indexed keywords

CLINICAL ISOLATES; CLOSTRIDIUM DIFFICILE; CONSENSUS SEQUENCE; DNA SEQUENCING; HIGH-THROUGHPUT; ILLUMINA; INSERTION SEQUENCES; INSERTION SITE; INTERGENIC REGIONS; TOXIGENIC;

EID: 84861154088     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.06193-11     Document Type: Article
Times cited : (28)

References (35)
  • 1
    • 0031149882 scopus 로고    scopus 로고
    • Isolation of alpha-toxin, theta-toxin and kappa-toxin mutants of Clostridium perfringens by Tn916 mutagenesis
    • Awad MM, Rood JI. 1997. Isolation of alpha-toxin, theta-toxin and kappa-toxin mutants of Clostridium perfringens by Tn916 mutagenesis. Microb. Pathog. 22:275-284.
    • (1997) Microb. Pathog. , vol.22 , pp. 275-284
    • Awad, M.M.1    Rood, J.I.2
  • 2
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Altman R, Brutlag D, Karp P, Lathrop R, Searls D (ed), AAAI Press, Menlo Park, CA
    • Bailey TL, Elkan C. 1994. Fitting a mixture model by expectation maximization to discover motifs in biopolymers, p 28-36In Altman R, Brutlag D, Karp P, Lathrop R, Searls D (ed), Proceedings of the 2nd International Conference on Intelligent Systems for Molecular Biology. AAAI Press, Menlo Park, CA.
    • (1994) Proceedings of the 2nd International Conference on Intelligent Systems for Molecular Biology , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 3
    • 77955155869 scopus 로고    scopus 로고
    • Base pairing small RNAs and their roles in global regulatory networks
    • Beisel CL, Storz G. 2010. Base pairing small RNAs and their roles in global regulatory networks. FEMS Microbiol. Rev. 34:866-882.
    • (2010) FEMS Microbiol. Rev. , vol.34 , pp. 866-882
    • Beisel, C.L.1    Storz, G.2
  • 4
    • 0035133472 scopus 로고    scopus 로고
    • Substrate complexes and domain organization of the Salmonella flagellar export chaperones FlgN and FliT
    • Bennett JCQ, Thomas J, Fraser GM, Hughes C. 2001. Substrate complexes and domain organization of the Salmonella flagellar export chaperones FlgN and FliT. Mol. Microbiol. 39:781-791.
    • (2001) Mol. Microbiol. , vol.39 , pp. 781-791
    • Bennett, J.C.Q.1    Thomas, J.2    Fraser, G.M.3    Hughes, C.4
  • 5
    • 80051832374 scopus 로고    scopus 로고
    • Genetic organisation, mobility and predicted functions of genes on integrated, mobile genetic elements in sequenced strains of Clostridium difficile
    • Brouwer MSM, Warburton PJ, Roberts AP, Mullany P, Allan E. 2011. Genetic organisation, mobility and predicted functions of genes on integrated, mobile genetic elements in sequenced strains of Clostridium difficile. PLoS One 6:e23014.
    • (2011) PLoS One , vol.6
    • Brouwer, M.S.M.1    Warburton, P.J.2    Roberts, A.P.3    Mullany, P.4    Allan, E.5
  • 6
    • 76649121515 scopus 로고    scopus 로고
    • A mariner-based transposon system for in vivo random mutagenesis of Clostridium difficile
    • Cartman ST, Minton NP. 2010. A mariner-based transposon system for in vivo random mutagenesis of Clostridium difficile. Appl. Environ. Microbiol. 76:1103-1109.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 1103-1109
    • Cartman, S.T.1    Minton, N.P.2
  • 7
    • 0031921950 scopus 로고    scopus 로고
    • Circularization of Tn916 is required for expression of the transposon-encoded transfer functions: characterization of long tetracycline-inducible transcripts reading through the attachment site
    • Celli J, Trieu-Cuot P. 1998. Circularization of Tn916 is required for expression of the transposon-encoded transfer functions: characterization of long tetracycline-inducible transcripts reading through the attachment site. Mol. Microbiol. 28:103-117.
    • (1998) Mol. Microbiol. , vol.28 , pp. 103-117
    • Celli, J.1    Trieu-Cuot, P.2
  • 9
    • 0023219960 scopus 로고
    • Two conjugation systems associated with Streptococcus faecalis plasmid pCF10: identification of a conjugative transposon that transfers between S. faecalis and Bacillus subtilis
    • Christie PJ, Korman RZ, Zahler SA, Adsit JC, Dunny GM. 1987. Two conjugation systems associated with Streptococcus faecalis plasmid pCF10: identification of a conjugative transposon that transfers between S. faecalis and Bacillus subtilis. J. Bacteriol. 169:2529-2536.
    • (1987) J. Bacteriol. , vol.169 , pp. 2529-2536
    • Christie, P.J.1    Korman, R.Z.2    Zahler, S.A.3    Adsit, J.C.4    Dunny, G.M.5
  • 10
    • 79951768064 scopus 로고    scopus 로고
    • Transposition of Tn916 in the four replicons of the Butyrivibrio proteoclasticus B316(T) genome
    • Cookson AL, et al. 2011. Transposition of Tn916 in the four replicons of the Butyrivibrio proteoclasticus B316(T) genome. FEMS Microbiol. Lett. 316:144-151.
    • (2011) FEMS Microbiol. Lett. , vol.316 , pp. 144-151
    • Cookson, A.L.1
  • 11
    • 0019415205 scopus 로고
    • Evidence for a chromosome-borne resistance transposon (Tn916) in Streptococcus faecalis that is capable of "conjugal" transfer in the absence of a conjugative plasmid
    • Franke AE, Clewell DB. 1981. Evidence for a chromosome-borne resistance transposon (Tn916) in Streptococcus faecalis that is capable of "conjugal" transfer in the absence of a conjugative plasmid. J. Bacteriol. 145: 494-502.
    • (1981) J. Bacteriol. , vol.145 , pp. 494-502
    • Franke, A.E.1    Clewell, D.B.2
  • 14
    • 15544377092 scopus 로고    scopus 로고
    • Generation of an erythromycin-sensitive derivative of Clostridium difficile strain 630 (630Deltaerm) and demonstration that the conjugative transposon Tn916DeltaE enters the genome of this strain at multiple sites
    • Hussain HA, Roberts AP, Mullany P. 2005. Generation of an erythromycin-sensitive derivative of Clostridium difficile strain 630 (630Deltaerm) and demonstration that the conjugative transposon Tn916DeltaE enters the genome of this strain at multiple sites. J. Med. Microbiol. 54(Part 2):137-141.
    • (2005) J. Med. Microbiol. , vol.54 , Issue.PART 2 , pp. 137-141
    • Hussain, H.A.1    Roberts, A.P.2    Mullany, P.3
  • 15
    • 0028839175 scopus 로고
    • A functional origin of transfer (oriT) on the conjugative transposon Tn916
    • Jaworski DD, Clewell DB. 1995. A functional origin of transfer (oriT) on the conjugative transposon Tn916. J. Bacteriol. 177:6644-6651.
    • (1995) J. Bacteriol. , vol.177 , pp. 6644-6651
    • Jaworski, D.D.1    Clewell, D.B.2
  • 16
    • 73249130761 scopus 로고    scopus 로고
    • Simultaneous assay of every gene in Salmonella Typhi using one million transposon mutants
    • Langridge GC, et al. 2009. Simultaneous assay of every gene in Salmonella Typhi using one million transposon mutants. Genome Res. 19:2308-2316.
    • (2009) Genome Res , vol.19 , pp. 2308-2316
    • Langridge, G.C.1
  • 17
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li H, Ruan J, Durbin R. 2008. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18:1851-1858.
    • (2008) Genome Res , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 18
    • 0026050939 scopus 로고
    • Transposon Tn916 mutagenesis in Clostridium botulinum
    • Lin WJ, Johnson EA. 1991. Transposon Tn916 mutagenesis in Clostridium botulinum. Appl. Environ. Microbiol. 57:2946-2950.
    • (1991) Appl. Environ. Microbiol , vol.57 , pp. 2946-2950
    • Lin, W.J.1    Johnson, E.A.2
  • 19
    • 0028929557 scopus 로고
    • Tn916 target DNA sequences bind the C-terminal domain of integrase protein with different affinities that correlate with transposon insertion frequency
    • Lu F, Churchward G. 1995. Tn916 target DNA sequences bind the C-terminal domain of integrase protein with different affinities that correlate with transposon insertion frequency. J. Bacteriol. 177:1938-1947.
    • (1995) J. Bacteriol. , vol.177 , pp. 1938-1947
    • Lu, F.1    Churchward, G.2
  • 20
    • 58149203237 scopus 로고    scopus 로고
    • CDD: specific functional annotation with the Conserved Domain Database
    • Marchler-Bauer A, et al. 2009. CDD: specific functional annotation with the Conserved Domain Database. Nucleic Acids Res. 37:D205-D210.
    • (2009) Nucleic Acids Res , vol.37
    • Marchler-Bauer, A.1
  • 21
    • 0032964875 scopus 로고    scopus 로고
    • Cell wall-anchored CshA polypeptide (259 kilodaltons) inStreptococcus gordonii forms surface fibrils that confer hydrophobic and adhesive properties
    • McNab R, et al. 1999. Cell wall-anchored CshA polypeptide (259 kilodaltons) inStreptococcus gordonii forms surface fibrils that confer hydrophobic and adhesive properties. J. Bacteriol. 181:3087-3095.
    • (1999) J. Bacteriol. , vol.181 , pp. 3087-3095
    • McNab, R.1
  • 22
    • 0028298861 scopus 로고
    • Gene cloning in Clostridium difficile using Tn916 as a shuttle conjugative transposon
    • Mullany P, Wilks M, Puckey L, Tabaqchali S. 1994. Gene cloning in Clostridium difficile using Tn916 as a shuttle conjugative transposon. Plasmid 31:320-323.
    • (1994) Plasmid , vol.31 , pp. 320-323
    • Mullany, P.1    Wilks, M.2    Puckey, L.3    Tabaqchali, S.4
  • 23
    • 65449155189 scopus 로고    scopus 로고
    • Clostridium difficile infection caused by the epidemic BI/NAP1/027 strain
    • O'Connor JR, Johnson S, Gerding DN. 2009. Clostridium difficile infection caused by the epidemic BI/NAP1/027 strain. Gastroenterology 136:1913-1924.
    • (2009) Gastroenterology , vol.136 , pp. 1913-1924
    • O'Connor, J.R.1    Johnson, S.2    Gerding, D.N.3
  • 24
    • 66249099218 scopus 로고    scopus 로고
    • A modular master on the move: the Tn916 family of mobile genetic elements
    • Roberts AP, Mullany P. 2009. A modular master on the move: the Tn916 family of mobile genetic elements. Trends Microbiol. 17:251-258.
    • (2009) Trends Microbiol , vol.17 , pp. 251-258
    • Roberts, A.P.1    Mullany, P.2
  • 25
    • 79960946351 scopus 로고    scopus 로고
    • Tn916-like genetic elements: a diverse group of modular mobile elements conferring antibiotic resistance
    • Roberts AP, Mullany P. 2011. Tn916-like genetic elements: a diverse group of modular mobile elements conferring antibiotic resistance. FEMS Microbiol. Rev. 35:856-871.
    • (2011) FEMS Microbiol. Rev. , vol.35 , pp. 856-871
    • Roberts, A.P.1    Mullany, P.2
  • 26
    • 0242269457 scopus 로고    scopus 로고
    • Development of an integrative vector for the expression of antisense RNA in Clostridium difficile
    • Roberts AP, et al. 2003. Development of an integrative vector for the expression of antisense RNA in Clostridium difficile. J. Microbiol. Methods 55:617-624.
    • (2003) J. Microbiol. Methods , vol.55 , pp. 617-624
    • Roberts, A.P.1
  • 27
    • 0024262928 scopus 로고
    • Tn916ΔE: a Tn916 transposon derivative expressing erythromycin resistance
    • Rubens CE, Heggen LM. 1988. Tn916ΔE: a Tn916 transposon derivative expressing erythromycin resistance. Plasmid 20:137-142.
    • (1988) Plasmid , vol.20 , pp. 137-142
    • Rubens, C.E.1    Heggen, L.M.2
  • 28
    • 0028216655 scopus 로고
    • Conjugative transposition of Tn916: preferred targets and evidence for conjugative transfer of a single strand and for a double-stranded circular intermediate
    • Scott JR, Bringel F, Marra D, Van Alstine G, Rudy CK. 1994. Conjugative transposition of Tn916: preferred targets and evidence for conjugative transfer of a single strand and for a double-stranded circular intermediate. Mol. Microbiol. 11:1099-1108.
    • (1994) Mol. Microbiol. , vol.11 , pp. 1099-1108
    • Scott, J.R.1    Bringel, F.2    Marra, D.3    Van Alstine, G.4    Rudy, C.K.5
  • 30
    • 33745550745 scopus 로고    scopus 로고
    • The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome
    • Sebaihia M, et al. 2006. The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Nat. Genet. 38:779-786.
    • (2006) Nat. Genet. , vol.38 , pp. 779-786
    • Sebaihia, M.1
  • 31
    • 76249088522 scopus 로고    scopus 로고
    • Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent strain
    • Stabler R, et al. 2009. Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent strain. Genome Biol. 10:R102.
    • (2009) Genome Biol , vol.10
    • Stabler, R.1
  • 32
    • 0026605348 scopus 로고
    • Characterization of the tet(M) determinant of Tn916: evidence for regulation by transcription attenuation
    • Su YA, He P, Clewell DB. 1992. Characterization of the tet(M) determinant of Tn916: evidence for regulation by transcription attenuation. Antimicrob. Agents Chemother. 36:769-778.
    • (1992) Antimicrob. Agents Chemother. , vol.36 , pp. 769-778
    • Su, Y.A.1    He, P.2    Clewell, D.B.3
  • 33
    • 39649088429 scopus 로고    scopus 로고
    • Phenotypic characterization of transposoninserted mutants of Clostridium proteoclasticum B316T using extracellular metabolomics
    • Villas-Bôas SG, et al. 2008. Phenotypic characterization of transposoninserted mutants of Clostridium proteoclasticum B316T using extracellular metabolomics. J. Biotechnol. 20:55-63.
    • (2008) J. Biotechnol. , vol.20 , pp. 55-63
    • Villas-Bôas, S.G.1
  • 34
    • 0034333343 scopus 로고    scopus 로고
    • DNA sequence of the insertional hot spot of Tn916 in the Clostridium difficile genome and discovery of a Tn916-like element in an environmental isolate integrated in the same hot spot
    • Wang H, Roberts AP, Mullany P. 2000. DNA sequence of the insertional hot spot of Tn916 in the Clostridium difficile genome and discovery of a Tn916-like element in an environmental isolate integrated in the same hot spot. FEMS Microbiol. Lett. 192:15-20.
    • (2000) FEMS Microbiol. Lett. , vol.192 , pp. 15-20
    • Wang, H.1    Roberts, A.P.2    Mullany, P.3
  • 35
    • 0020631088 scopus 로고
    • Transferable resistance to clindamycin, erythromycin, and tetracycline in Clostridium difficile
    • Wüst J, Hardegger U. 1983. Transferable resistance to clindamycin, erythromycin, and tetracycline in Clostridium difficile. Antimicrob. Agents Chemother. 23:784-786.
    • (1983) Antimicrob. Agents Chemother. , vol.23 , pp. 784-786
    • Wüst, J.1    Hardegger, U.2


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