RNase P branches out from RNP to protein: Organelle-triggered diversification?

Genes and Development

Volumn 26, Issue 10, 2012, Pages 1005-1009

  Goldfarb, Katherine C ^a   Borah, Sumit ^a   Cech, Thomas R ^a  

^a UNIVERSITY OF COLORADO   (United States)

Author keywords

Pentatricopeptide repeat; Plant; RNA processing; RNase P; tRNA maturation

Indexed keywords

MITOCHONDRIAL RNA; RIBONUCLEASE P; RIBOZYME;

ARABIDOPSIS; ARCHEAN; ARTICLE; BACTERIUM; CELL NUCLEUS; CELL ORGANELLE; EUKARYOTE; GENETIC VARIABILITY; HUMAN; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONFORMATION; PROTEIN FUNCTION; PROTEIN SUBUNIT; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; RIBONUCLEASE P; RNA, MESSENGER; RNA, SMALL NUCLEOLAR; RNA, TRANSFER;

ARABIDOPSIS THALIANA;

EID: 84861129919     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.193581.112     Document Type: Article

References (36)

1. Bhattacharya D, Yoon HS, Hackett JD. 2004. Photosynthetic eukaryotes unite: Endosymbiosis connects the dots. BioEssays 26: 50-60.
2. Burger G, Jackson C, Waller RF. 2012. Unusual mitochondrial genomes and genes. In Organelle genetics (ed. CE Bullerwell), pp. 41-76. Springer, Berlin.
3. Cech TR. 2009. Crawling out of the RNA world. Cell 136: 599-602.
4. Crary SM, Niranjanakumari S, Fierke CA. 1998. The protein component of Bacillus subtilis ribonuclease P increases catalytic efficiency by enhancing interactions with the 59 leader sequence of pre-tRNAAsp. Biochemistry 37: 9409-9416.
5. Evans D, Marquez SM, Pace NR. 2006. RNase P: Interface of the RNA and protein worlds. Trends Biochem Sci 31: 333-341.
6. Fang XW, Yang XJ, Littrell K, Niranjanakumari S, Thiyagarajan P, Fierke CA, Sosnick TR, Pan T. 2001. The Bacillus subtilis RNase P holoenzyme contains two RNase P RNA and two RNase P protein subunits. RNA 7: 233-241.
7. Gobert A, Gutmann B, Taschner A, Gossringer M, Holzmann J, Hartmann RK, Rossmanith W, Giegé P. 2010. A single Arabidopsis organellar protein has RNase P activity. Nat Struct Mol Biol 17: 740-744.
8. Guerrier-Takada C, Gardiner K, Marsh T, Pace N, Altman S. 1983. The RNA moiety of Ribonuclease P is the catalytic subunit of the enzyme. Cell 35: 849-857.
9. Gutmann B, Gobert A, Giegé P. 2012. PRORP proteins support RNase P activity in both organelles and the nucleus in Arabidopsis. Genes Dev (this issue). doi: 10.1101/gad.189514.112.
10. Hall TA, Brown JW. 2002. Archaeal RNase P has multiple protein subunits homologous to eukaryotic nuclear RNase P proteins. RNA 8: 296-306.
11. Hollingsworth MJ, Martin NC. 1986. RNase P activity in the mitochondria of Saccharomyces cerevisiae depends on both mitochondrion and nucleus-encoded components. Mol Cell Biol 6: 1058-1064.
12. Holzmann J, Frank P, Loffler E, Bennett KL, Gerner C, Rossmanith W. 2008. RNase P without RNA: Identification and functional reconstitution of the human mitochondrial tRNA processing enzyme. Cell 135: 462-474.
13. Kikovska E, Svard SG, Kirsebom LA. 2007. Eukaryotic RNase P RNA mediates cleavage in the absence of protein. Proc Natl Acad Sci 104: 2062-2067.
14. Kurz JC, Niranjanakumari S, Fierke CA. 1998. Protein component of Bacillus subtilis RNase P specifically enhances the affinity for precursor-tRNAAsp. Biochemistry 37: 2393-2400.
15. Lai LB, Vioque A, Kirsebom LA, Gopalan V. 2010. Unexpected diversity of RNase P, an ancient tRNA processing enzyme: Challenges and prospects. FEBS Lett 584: 287-296.
16. Lai LB, Bernal-Bayard P, Mohannath G, Lai SM, Gopalan V, Vioque A. 2011. A functional RNase P protein subunit of bacterial origin in some eukaryotes. Mol Genet Genomics 286: 359-369.
17. Liu F, Altman S. 1994. Differential evolution of substrates for an RNA enzyme in the presence and absence of its protein cofactor. Cell 77: 1093-1100.
18. Marquez SM, Harris JK, Kelley ST, Brown JW, Dawson SC, Roberts EC, Pace NR. 2005. Structural implications of novel diversity in eucaryal RNase P RNA. RNA 11: 739-751.
19. Mercer TR, Neph S, Dinger ME, Crawford J, Smith MA, Shearwood AM, Haugen E, Bracken CP, Rackham O, Stamatoyannopoulos JA, et al. 2011. The human mitochondrial transcriptome. Cell 146: 645-658.
20. Morales MJ, Dang YL, Lou YC, Sulo P, Martin NC. 1992. A 105-kDa protein is required for yeast mitochondrial RNase P activity. Proc Natl Acad Sci 89: 9875-9879.
21. Pace NR. 2009. Mapping the tree of life: Progress and prospects. Microbiol Mol Biol Rev 73: 565-576.
22. Pannucci JA, Haas ES, Hall TA, Harris JK, Brown JW. 1999. RNase P RNAs from some Archaea are catalytically active. Proc Natl Acad Sci 96: 7803-7808.
23. Peck-Miller KA, Altman S. 1991. Kinetics of the processing of the precursor to 4.5 S RNA, a naturally occurring substrate for RNase P from Escherichia coli. J Mol Biol 221: 1-5.
24. Randau L, Schroder I, Soll D. 2008. Life without RNase P. Nature 453: 120-123.
25. Reich C, Olsen GJ, Pace B, Pace NR. 1988. Role of the protein moiety of ribonuclease P, a ribonucleoprotein enzyme. Science 239: 178-181.
26. Seif ER. 2003. Mitochondrial RNase P RNAs in ascomycete fungi: Lineage-specific variations in RNA secondary structure. RNA 9: 1073-1083.
27. Seif E, Leigh J, Liu Y, Roewer I, Forget L, Lang BF. 2005. Comparative mitochondrial genomics in zygomycetes: Bacterialike RNase P RNAs, mobile elements and a close source of the group I intron invasion in angiosperms. Nucleic Acids Res 33: 734-744.
28. Sun FJ, Caetano-Anolles G. 2010. The ancient history of the structure of ribonuclease P and the early origins of archaea. BMC Bioinformatics 11: 153. doi: 10.1186/1471-2105-11-153.
29. Thomas BC, Gao L, Stomp D, Li X, Gegenheimer PA. 1995. Spinach chloroplast RNase P: A putative protein enzyme. Nucleic Acids Symp Ser 33: 95-98.
30. Thomas BC, Li X, Gegenheimer P. 2000. Chloroplast ribonuclease P does not utilize the ribozyme-type pre-tRNA cleavage mechanism. RNA 6: 545-553.
31. Timmis JN, Ayliffe MA, Huang CY, Martin W. 2004. Endosymbiotic gene transfer: Organelle genomes forge eukaryotic chromosomes. Nat Rev Genet 5: 123-135.
32. Tsai HY, Pulukkunat DK, Woznick WK, Gopalan V. 2006. Functional reconstitution and characterization of Pyrococcus furiosus RNase P. Proc Natl Acad Sci 103: 16147-16152.
33. van der Giezen M. 2011. Mitochondria and the rise of eukaryotes. Bioscience 61: 594-601.
34. Wang MJ, Davis NW, Gegenheimer P. 1988. Novel mechanisms for maturation of chloroplast transfer RNA precursors. EMBO J 7: 1567-1574.
35. Wang G, Chen HW, Oktay Y, Zhang J, Allen EL, Smith GM, Fan KC, Hong JS, French SW, McCaffery JM, et al. 2010. PNPASE regulates RNA import into mitochondria. Cell 142: 456-467.
36. Waters E, Hohn MJ, Ahel I, Graham DE, Adams MD, Barnstead M, Beeson KY, Bibbs L, Bolanos R, Keller M, et al. 2003. The genome of Nanoarchaeum equitans: Insights into early archaeal evolution and derived parasitism. Proc Natl Acad Sci 100: 12984-12988.