-
1
-
-
0033569354
-
A census of protein repeats
-
Marcotte, E. M., Pellegrini, M., Yeates, T. O., Eisenberg, D., A census of protein repeats. J. Mol. Biol. 1999, 293, 151-160.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 151-160
-
-
Marcotte, E.M.1
Pellegrini, M.2
Yeates, T.O.3
Eisenberg, D.4
-
2
-
-
33845661120
-
Beta-rolls, beta-helices, and other beta-solenoid proteins
-
Kajava, A. V., Steven, A. C., Beta-rolls, beta-helices, and other beta-solenoid proteins. Adv. Protein Chem. 2006, 73, 55-96.
-
(2006)
Adv. Protein Chem.
, vol.73
, pp. 55-96
-
-
Kajava, A.V.1
Steven, A.C.2
-
3
-
-
34547692622
-
Trinucleotide repeat disorders
-
Orr, H. T., Zoghbi, H. Y., Trinucleotide repeat disorders. Annu. Rev. Neurosci. 2007, 30, 575-621.
-
(2007)
Annu. Rev. Neurosci.
, vol.30
, pp. 575-621
-
-
Orr, H.T.1
Zoghbi, H.Y.2
-
4
-
-
40749102414
-
XSTREAM: a practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
-
Newman, A. M., Cooper, J. B., XSTREAM: a practical algorithm for identification and architecture modeling of tandem repeats in protein sequences. BMC Bioinformatics 2007, 8, 382.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 382
-
-
Newman, A.M.1
Cooper, J.B.2
-
5
-
-
70349989506
-
T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm
-
Jorda, J., Kajava, A. V., T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm. Bioinformatics 2009, 25, 2632-2638.
-
(2009)
Bioinformatics
, vol.25
, pp. 2632-2638
-
-
Jorda, J.1
Kajava, A.V.2
-
6
-
-
20444451594
-
Tracking repeats using significance and transitivity
-
Szklarczyk, R., Heringa, J., Tracking repeats using significance and transitivity. Bioinformatics 2004, 20, i311-i317.
-
(2004)
Bioinformatics
, vol.20
-
-
Szklarczyk, R.1
Heringa, J.2
-
7
-
-
0034946803
-
Differential distribution of simple sequence repeats in eukaryotic genome sequences
-
Katti, M. V., Ranjekar, P. K., Gupta, V. S., Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol. Biol. Evol. 2001, 18, 1161-1167.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1161-1167
-
-
Katti, M.V.1
Ranjekar, P.K.2
Gupta, V.S.3
-
8
-
-
0037039436
-
Amino acid runs in eukaryotic proteomes and disease associations
-
Karlin, S., Brocchieri, L., Bergman, A., Mrazek, J. et al., Amino acid runs in eukaryotic proteomes and disease associations. Proc. Natl. Acad. Sci. USA 2002, 99, 333-338.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 333-338
-
-
Karlin, S.1
Brocchieri, L.2
Bergman, A.3
Mrazek, J.4
-
9
-
-
34347379533
-
RCPdb: an evolutionary classification and codon usage database for repeat-containing proteins
-
Faux, N. G., Huttley, G. A., Mahmood, K., Webb, G. I. et al., RCPdb: an evolutionary classification and codon usage database for repeat-containing proteins. Genome Res. 2007, 17, 1118-1127.
-
(2007)
Genome Res.
, vol.17
, pp. 1118-1127
-
-
Faux, N.G.1
Huttley, G.A.2
Mahmood, K.3
Webb, G.I.4
-
10
-
-
78650101939
-
Protein homorepeats sequences, structures, evolution, and functions
-
Jorda, J., Kajava, A. V., Protein homorepeats sequences, structures, evolution, and functions. Adv. Protein Chem. Struct. Biol. 2010, 79, 59-88.
-
(2010)
Adv. Protein Chem. Struct. Biol.
, vol.79
, pp. 59-88
-
-
Jorda, J.1
Kajava, A.V.2
-
11
-
-
19044366369
-
A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis
-
Le
-
Le Fleche, P., Hauck, Y., Onteniente, L., Prieur, A. et al., A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis. BMC Microbiol. 2001, 1, 2.
-
(2001)
BMC Microbiol.
, vol.1
, pp. 2
-
-
Fleche, P.1
Hauck, Y.2
Onteniente, L.3
Prieur, A.4
-
12
-
-
15944382704
-
TRbase: a database relating tandem repeats to disease genes for the human genome
-
Boby, T., Patch, A. M., Aves, S. J., TRbase: a database relating tandem repeats to disease genes for the human genome. Bioinformatics 2005, 21, 811-816.
-
(2005)
Bioinformatics
, vol.21
, pp. 811-816
-
-
Boby, T.1
Patch, A.M.2
Aves, S.J.3
-
13
-
-
33846070952
-
TRDB-the Tandem Repeats Database
-
Gelfand, Y., Rodriguez, A., Benson, G., TRDB-the Tandem Repeats Database. Nucleic Acids Res. 2007, 35, D80-D87.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Gelfand, Y.1
Rodriguez, A.2
Benson, G.3
-
14
-
-
33747119651
-
ProtRepeatsDB: a database of amino acid repeats in genomes
-
Kalita, M. K., Ramasamy, G., Duraisamy, S., Chauhan, V. S. et al., ProtRepeatsDB: a database of amino acid repeats in genomes. BMC Bioinformatics 2006, 7, 336.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 336
-
-
Kalita, M.K.1
Ramasamy, G.2
Duraisamy, S.3
Chauhan, V.S.4
-
15
-
-
77953211283
-
Protein tandem repeats-the more perfect, the less structured
-
Jorda, J., Xue, B., Uversky, V. N., Kajava, A. V., Protein tandem repeats-the more perfect, the less structured. Febs. J. 2010, 277, 2673-2682.
-
(2010)
Febs. J.
, vol.277
, pp. 2673-2682
-
-
Jorda, J.1
Xue, B.2
Uversky, V.N.3
Kajava, A.V.4
-
16
-
-
0036081345
-
GenBank
-
Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J. et al., GenBank. Nucleic Acids Res. 2002, 30, 17-20.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 17-20
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
-
17
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
Bairoch, A., Apweiler, R., The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 2000, 28, 45-48.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
18
-
-
0036616218
-
The Protein Data Bank
-
Berman, H. M., Battistuz, T., Bhat, T. N., Bluhm, W. F. et al., The Protein Data Bank. Acta. Crystallogr. D. Biol. Crystallogr. 2002, 58, 899-907.
-
(2002)
Acta. Crystallogr. D. Biol. Crystallogr.
, vol.58
, pp. 899-907
-
-
Berman, H.M.1
Battistuz, T.2
Bhat, T.N.3
Bluhm, W.F.4
-
19
-
-
13244255415
-
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
-
Edgar, R. C., MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 2004, 5, 113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
20
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G., Gibson, T. J., CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22, 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
21
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D. et al., Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 2000, 25, 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
-
22
-
-
52249124593
-
TOP-IDP-scale: a new amino acid scale measuring propensity for intrinsic disorder
-
Campen, A., Williams, R. M., Brown, C. J., Meng, J. et al., TOP-IDP-scale: a new amino acid scale measuring propensity for intrinsic disorder. Protein Pept. Lett. 2008, 15, 956-963.
-
(2008)
Protein Pept. Lett.
, vol.15
, pp. 956-963
-
-
Campen, A.1
Williams, R.M.2
Brown, C.J.3
Meng, J.4
-
23
-
-
77952988108
-
A new generation of homology search tools based on probabilistic inference
-
Eddy, S. R., A new generation of homology search tools based on probabilistic inference. Genome Inform. 2009, 23, 205-211.
-
(2009)
Genome Inform.
, vol.23
, pp. 205-211
-
-
Eddy, S.R.1
-
24
-
-
75549090603
-
The Pfam protein families database
-
Finn, R. D., Mistry, J., Tate, J., Coggill, P. et al., The Pfam protein families database. Nucleic Acids Res. 2010, 38, D211-D222.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
-
25
-
-
0031813130
-
Pfam: multiple sequence alignments and HMM-profiles of protein domains
-
Sonnhammer, E. L., Eddy, S. R., Birney, E., Bateman, A. et al., Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Res. 1998, 26, 320-322.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 320-322
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Birney, E.3
Bateman, A.4
-
26
-
-
0030093114
-
A flexible motif search technique based on generalized profiles
-
Bucher, P., Karplus, K., Moeri, N., Hofmann, K., A flexible motif search technique based on generalized profiles. Comput. Chem. 1996, 20, 3-23.
-
(1996)
Comput. Chem.
, vol.20
, pp. 3-23
-
-
Bucher, P.1
Karplus, K.2
Moeri, N.3
Hofmann, K.4
|