메뉴 건너뛰기




Volumn 12, Issue 9, 2012, Pages 1333-1336

PRDB: Protein Repeat DataBase

Author keywords

Bioinformatics; Database; Proteome annotation; Sequence analysis; Tandem repeats

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; PRIORITY JOURNAL; PROTEIN DATABASE; TANDEM REPEAT;

EID: 84861120667     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201100534     Document Type: Article
Times cited : (10)

References (26)
  • 2
    • 33845661120 scopus 로고    scopus 로고
    • Beta-rolls, beta-helices, and other beta-solenoid proteins
    • Kajava, A. V., Steven, A. C., Beta-rolls, beta-helices, and other beta-solenoid proteins. Adv. Protein Chem. 2006, 73, 55-96.
    • (2006) Adv. Protein Chem. , vol.73 , pp. 55-96
    • Kajava, A.V.1    Steven, A.C.2
  • 3
    • 34547692622 scopus 로고    scopus 로고
    • Trinucleotide repeat disorders
    • Orr, H. T., Zoghbi, H. Y., Trinucleotide repeat disorders. Annu. Rev. Neurosci. 2007, 30, 575-621.
    • (2007) Annu. Rev. Neurosci. , vol.30 , pp. 575-621
    • Orr, H.T.1    Zoghbi, H.Y.2
  • 4
    • 40749102414 scopus 로고    scopus 로고
    • XSTREAM: a practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
    • Newman, A. M., Cooper, J. B., XSTREAM: a practical algorithm for identification and architecture modeling of tandem repeats in protein sequences. BMC Bioinformatics 2007, 8, 382.
    • (2007) BMC Bioinformatics , vol.8 , pp. 382
    • Newman, A.M.1    Cooper, J.B.2
  • 5
    • 70349989506 scopus 로고    scopus 로고
    • T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm
    • Jorda, J., Kajava, A. V., T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm. Bioinformatics 2009, 25, 2632-2638.
    • (2009) Bioinformatics , vol.25 , pp. 2632-2638
    • Jorda, J.1    Kajava, A.V.2
  • 6
    • 20444451594 scopus 로고    scopus 로고
    • Tracking repeats using significance and transitivity
    • Szklarczyk, R., Heringa, J., Tracking repeats using significance and transitivity. Bioinformatics 2004, 20, i311-i317.
    • (2004) Bioinformatics , vol.20
    • Szklarczyk, R.1    Heringa, J.2
  • 7
    • 0034946803 scopus 로고    scopus 로고
    • Differential distribution of simple sequence repeats in eukaryotic genome sequences
    • Katti, M. V., Ranjekar, P. K., Gupta, V. S., Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol. Biol. Evol. 2001, 18, 1161-1167.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1161-1167
    • Katti, M.V.1    Ranjekar, P.K.2    Gupta, V.S.3
  • 9
    • 34347379533 scopus 로고    scopus 로고
    • RCPdb: an evolutionary classification and codon usage database for repeat-containing proteins
    • Faux, N. G., Huttley, G. A., Mahmood, K., Webb, G. I. et al., RCPdb: an evolutionary classification and codon usage database for repeat-containing proteins. Genome Res. 2007, 17, 1118-1127.
    • (2007) Genome Res. , vol.17 , pp. 1118-1127
    • Faux, N.G.1    Huttley, G.A.2    Mahmood, K.3    Webb, G.I.4
  • 10
    • 78650101939 scopus 로고    scopus 로고
    • Protein homorepeats sequences, structures, evolution, and functions
    • Jorda, J., Kajava, A. V., Protein homorepeats sequences, structures, evolution, and functions. Adv. Protein Chem. Struct. Biol. 2010, 79, 59-88.
    • (2010) Adv. Protein Chem. Struct. Biol. , vol.79 , pp. 59-88
    • Jorda, J.1    Kajava, A.V.2
  • 11
    • 19044366369 scopus 로고    scopus 로고
    • A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis
    • Le
    • Le Fleche, P., Hauck, Y., Onteniente, L., Prieur, A. et al., A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis. BMC Microbiol. 2001, 1, 2.
    • (2001) BMC Microbiol. , vol.1 , pp. 2
    • Fleche, P.1    Hauck, Y.2    Onteniente, L.3    Prieur, A.4
  • 12
    • 15944382704 scopus 로고    scopus 로고
    • TRbase: a database relating tandem repeats to disease genes for the human genome
    • Boby, T., Patch, A. M., Aves, S. J., TRbase: a database relating tandem repeats to disease genes for the human genome. Bioinformatics 2005, 21, 811-816.
    • (2005) Bioinformatics , vol.21 , pp. 811-816
    • Boby, T.1    Patch, A.M.2    Aves, S.J.3
  • 15
    • 77953211283 scopus 로고    scopus 로고
    • Protein tandem repeats-the more perfect, the less structured
    • Jorda, J., Xue, B., Uversky, V. N., Kajava, A. V., Protein tandem repeats-the more perfect, the less structured. Febs. J. 2010, 277, 2673-2682.
    • (2010) Febs. J. , vol.277 , pp. 2673-2682
    • Jorda, J.1    Xue, B.2    Uversky, V.N.3    Kajava, A.V.4
  • 17
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    • Bairoch, A., Apweiler, R., The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 2000, 28, 45-48.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 19
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: a multiple sequence alignment method with reduced time and space complexity
    • Edgar, R. C., MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 2004, 5, 113.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 20
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G., Gibson, T. J., CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 21
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D. et al., Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 2000, 25, 25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3    Botstein, D.4
  • 22
    • 52249124593 scopus 로고    scopus 로고
    • TOP-IDP-scale: a new amino acid scale measuring propensity for intrinsic disorder
    • Campen, A., Williams, R. M., Brown, C. J., Meng, J. et al., TOP-IDP-scale: a new amino acid scale measuring propensity for intrinsic disorder. Protein Pept. Lett. 2008, 15, 956-963.
    • (2008) Protein Pept. Lett. , vol.15 , pp. 956-963
    • Campen, A.1    Williams, R.M.2    Brown, C.J.3    Meng, J.4
  • 23
    • 77952988108 scopus 로고    scopus 로고
    • A new generation of homology search tools based on probabilistic inference
    • Eddy, S. R., A new generation of homology search tools based on probabilistic inference. Genome Inform. 2009, 23, 205-211.
    • (2009) Genome Inform. , vol.23 , pp. 205-211
    • Eddy, S.R.1
  • 25
    • 0031813130 scopus 로고    scopus 로고
    • Pfam: multiple sequence alignments and HMM-profiles of protein domains
    • Sonnhammer, E. L., Eddy, S. R., Birney, E., Bateman, A. et al., Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Res. 1998, 26, 320-322.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 320-322
    • Sonnhammer, E.L.1    Eddy, S.R.2    Birney, E.3    Bateman, A.4
  • 26
    • 0030093114 scopus 로고    scopus 로고
    • A flexible motif search technique based on generalized profiles
    • Bucher, P., Karplus, K., Moeri, N., Hofmann, K., A flexible motif search technique based on generalized profiles. Comput. Chem. 1996, 20, 3-23.
    • (1996) Comput. Chem. , vol.20 , pp. 3-23
    • Bucher, P.1    Karplus, K.2    Moeri, N.3    Hofmann, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.