Absence of Helicobacter pylori high tetracycline resistant 16S rDNA AGA926-928TTC genotype in gastric biopsy specimens from dyspeptic patients of a city in the interior of São Paulo, Brazil

BMC Gastroenterology

Volumn 12, Issue , 2012, Pages

  Suzuki, Rodrigo B ^a,c   Almeida, Cristiane M ^b   Sperança, Márcia A ^b,c  

^a Department of Genotyping Hemocenter   (Brazil)

^b Marilia Medical School   (Brazil)

^c UNIVERSIDADE FEDERAL DO ABC   (Brazil)

Author keywords

Helicobacter pylori; Helicobacter pylori 16 S rDNA; Helicobacter pylori 16 S rDNA polymorphism; Nucleic acid based diagnosis; Tetracycline resistance

Indexed keywords

DNA FRAGMENT; TETRACYCLINE;

16S RDNA GENE; ADULT; AGED; AMPLICON; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENE; BRAZIL; CHRONIC GASTRITIS; CONTROLLED STUDY; DYSPEPSIA; GENOTYPE; HELICOBACTER PYLORI; HUMAN; HUMAN TISSUE; MAJOR CLINICAL STUDY; NUCLEIC ACID BASE SUBSTITUTION; NUCLEOTIDE SEQUENCE; PEPTIC ULCER; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RESTRICTION SITE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STOMACH BIOPSY;

ADULT; AGED; AGED, 80 AND OVER; BASE SEQUENCE; BRAZIL; DNA, BACTERIAL; DNA, RIBOSOMAL; DYSPEPSIA; GASTRITIS; HELICOBACTER INFECTIONS; HELICOBACTER PYLORI; HUMANS; MIDDLE AGED; MOLECULAR SEQUENCE DATA; MUTATION; PEPTIC ULCER; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; TETRACYCLINE RESISTANCE; YOUNG ADULT;

EID: 84861091693     PISSN: None     EISSN: 1471230X     Source Type: Journal    
DOI: 10.1186/1471-230X-12-49     Document Type: Article

References (38)

1. Megraud F. Helicobacter pylori infection: review and practice. Presse Med 2010, 39(7-8):815-822.
2. Rimbara E, Fischbach LA, Graham DY. Optimal therapy for Helicobacter pylori infections. Nat Rev Gastroenterol Hepatol 2011, 8(2):79-88. 10.1038/nrgastro.2010.210, 21293508.
3. Chisholm SA, Teare EL, Davies K, Owen RJ. Surveillance of primary antibiotic resistance of Helicobacter pylori at centres in England and Wales over a six-year period (2000-2005). Euro surveillance : bulletin europeen sur les maladies transmissibles. European communicable disease bulletin 2007, 12(7):E3-4.
4. Coelho LG, Zaterka S. Second brazilian consensus conference on helicobacter pylori infection. Arq Gastroenterol 2005, 42(2):128-132.
5. McNamara D, O'Morain C. Consensus guidelines: agreement and debate surrounding the optimal management of Helicobacter pylori infection. Canadian journal of gastroenterology. Journal canadien de gastroenterologie 2000, 14(6):511-517.
6. Malfertheiner P, Megraud F, O'Morain C, Bazzoli F, El-Omar E, Graham D, Hunt R, Rokkas T, Vakil N, Kuipers EJ. Current concepts in the management of Helicobacter pylori infection: the Maastricht III Consensus Report. Gut 2007, 56(6):772-781. 10.1136/gut.2006.101634, 1954853, 17170018.
7. Chey WD, Wong BC. American College of Gastroenterology guideline on the management of Helicobacter pylori infection. Am J Gastroenterol 2007, 102(8):1808-1825. 10.1111/j.1572-0241.2007.01393.x, 17608775.
8. Graham DY, Fischbach L. Helicobacter pylori infection. N Eng J Med 2010, 363(6):595-596. author reply 596.
9. Qasim A, O'Morain CA. Review article: treatment of Helicobacter pylori infection and factors influencing eradication. Aliment Pharmacol Ther 2002, 16(Suppl 1):24-30.
10. Wermeille J, Cunningham M, Dederding JP, Girard L, Baumann R, Zelger G, Buri P, Metry JM, Sitavanc R, Gallaz L, et al. Failure of Helicobacter pylori eradication: is poor compliance the main cause?. Gastroenterol Clin Biol 2002, 26(3):216-219.
11. Egan BJ, Marzio L, O'Connor H, O'Morain C. Treatment of Helicobacter pylori infection. Helicobacter 2008, 13(Suppl 1):35-40.
12. Frota LC, da Cunha Mdo P, Luz CR, de Araujo-Filho AH, Frota LA, Braga LL. Helicobacter pylori eradication using tetracycline and furazolidone versus amoxicillin and azithromycin in lansoprazole based triple therapy: an open randomized clinical trial. Arq Gastroenterol 2005, 42(2):111-115.
13. Cuchi Burgos E, Forne Bardera M, Quintana Riera S, Lite Lite J, Garau Alemany J. [Evolution of the sensitivity of 235 strains of Helicobacter pylori from 1995 to 1998 and impact of antibiotic treatment]. Enferm Infecc Microbiol Clin 2002, 20(4):157-160.
14. Parsons HK, Carter MJ, Sanders DS, Winstanley T, Lobo AJ. Helicobacter pylori antimicrobial resistance in the United Kingdom: the effect of age, sex and socio-economic status. Aliment Pharmacol Ther 2001, 15(9):1473-1478. 10.1046/j.1365-2036.2001.01068.x, 11552921.
15. Kim JJ, Reddy R, Lee M, Kim JG, El-Zaatari FA, Osato MS, Graham DY, Kwon DH. Analysis of metronidazole, clarithromycin and tetracycline resistance of Helicobacter pylori isolates from Korea. J Antimicrob Chemother 2001, 47(4):459-461. 10.1093/jac/47.4.459, 11266421.
16. Vallejos C, Garrido L, Caceres D, Madrid AM, Defilippi C, Toledo H. Prevalence of metronidazole, clarithromycin and tetracycline resistance in Helicobacter pylori isolated from Chilean patients. Rev Med Chil 2007, 135(3):287-293.
17. Mendonca S, Ecclissato C, Sartori MS, Godoy AP, Guerzoni RA, Degger M, Pedrazzoli J. Prevalence of Helicobacter pylori resistance to metronidazole, clarithromycin, amoxicillin, tetracycline, and furazolidone in Brazil. Helicobacter 2000, 5(2):79-83. 10.1046/j.1523-5378.2000.00011.x, 10849055.
18. Boyanova L, Mitov I. Geographic map and evolution of primary Helicobacter pylori resistance to antibacterial agents. Expert Rev Anti Infect Ther 2010, 8(1):59-70. 10.1586/eri.09.113, 20014902.
19. Kwon DH, Kim JJ, Lee M, Yamaoka Y, Kato M, Osato MS, El-Zaatari FA, Graham DY. Isolation and characterization of tetracycline-resistant clinical isolates of Helicobacter pylori. Antimicrob Agents Chemother 2000, 44(11):3203-3205. 10.1128/AAC.44.11.3203-3205.2000, 101634, 11036054.
20. Realdi G, Dore MP, Piana A, Atzei A, Carta M, Cugia L, Manca A, Are BM, Massarelli G, Mura I, et al. Pretreatment antibiotic resistance in Helicobacter pylori infection: results of three randomized controlled studies. Helicobacter 1999, 4(2):106-112. 10.1046/j.1523-5378.1999.99002.x, 10382124.
21. Wu JY, Kim JJ, Reddy R, Wang WM, Graham DY, Kwon DH. Tetracycline-resistant clinical Helicobacter pylori isolates with and without mutations in 16 S rRNA-encoding genes. Antimicrob Agents Chemother 2005, 49(2):578-583. 10.1128/AAC.49.2.578-583.2005, 547221, 15673736.
22. Woo HY, Park DI, Park H, Kim MK, Kim DH, Kim IS, Kim YJ. Dual-priming oligonucleotide-based multiplex PCR for the detection of Helicobacter pylori and determination of clarithromycin resistance with gastric biopsy specimens. Helicobacter 2009, 14(1):22-28. 10.1111/j.1523-5378.2009.00654.x, 19191892.
23. Chisholm SA, Owen RJ, Teare EL, Saverymuttu S. PCR-based diagnosis of Helicobacter pylori infection and real-time determination of clarithromycin resistance directly from human gastric biopsy samples. J Clin Microbiol 2001, 39(4):1217-1220. 10.1128/JCM.39.4.1217-1220.2001, 87913, 11283030.
24. Tajbakhsh S, Samarbaf-Zadeh AR, Moosavian M. Comparison of fluorescent in situ hybridization and histological method for the diagnosis of Helicobacter pylori in gastric biopsy samples. Medical science monitor: international medical journal of experimental and clinical research 2008, 14(9):BR183-BR187.
25. Burucoa C, Garnier M, Silvain C, Fauchere JL. Quadruplex real-time PCR assay using allele-specific scorpion primers for detection of mutations conferring clarithromycin resistance to Helicobacter pylori. J Clin Microbiol 2008, 46(7):2320-2326. 10.1128/JCM.02352-07, 2446943, 18463216.
26. Brodersen DE, Clemons WM, Carter AP, Morgan-Warren RJ, Wimberly BT, Ramakrishnan V. The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit. Cell 2000, 103(7):1143-1154. 10.1016/S0092-8674(00)00216-6, 11163189.
27. Pioletti M, Schlunzen F, Harms J, Zarivach R, Gluhmann M, Avila H, Bashan A, Bartels H, Auerbach T, Jacobi C, et al. Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3. EMBO J 2001, 20(8):1829-1839. 10.1093/emboj/20.8.1829, 125237, 11296217.
28. Gerrits MM, de Zoete MR, Arents NL, Kuipers EJ, Kusters JG. 16 S rRNA mutation-mediated tetracycline resistance in Helicobacter pylori. Antimicrob Agents Chemother 2002, 46(9):2996-3000. 10.1128/AAC.46.9.2996-3000.2002, 127406, 12183259.
29. Trieber CA, Taylor DE. Mutations in the 16 S rRNA genes of Helicobacter pylori mediate resistance to tetracycline. J Bacteriol 2002, 184(8):2131-2140. 10.1128/JB.184.8.2131-2140.2002, 134973, 11914344.
30. Gerrits MM, Berning M, Van Vliet AH, Kuipers EJ, Kusters JG. Effects of 16 S rRNA gene mutations on tetracycline resistance in Helicobacter pylori. Antimicrob Agents Chemother 2003, 47(9):2984-2986. 10.1128/AAC.47.9.2984-2986.2003, 182601, 12937008.
31. Dailidiene D, Bertoli MT, Miciuleviciene J, Mukhopadhyay AK, Dailide G, Pascasio MA, Kupcinskas L, Berg DE. Emergence of tetracycline resistance in Helicobacter pylori: multiple mutational changes in 16 S ribosomal DNA and other genetic loci. Antimicrob Agents Chemother 2002, 46(12):3940-3946. 10.1128/AAC.46.12.3940-3946.2002, 132778, 12435699.
32. Ribeiro ML, Gerrits MM, Benvengo YH, Berning M, Godoy AP, Kuipers EJ, Mendonca S, van Vliet AH, Pedrazzoli J, Kusters JG. Detection of high-level tetracycline resistance in clinical isolates of Helicobacter pylori using PCR-RFLP. FEMS Immunol Med Microbiol 2004, 40(1):57-61. 10.1016/S0928-8244(03)00277-3, 14734187.
33. Boyanova L, Stancheva I, Spassova Z, Katzarov N, Mitov I, Koumanova R. Primary and combined resistance to four antimicrobial agents in Helicobacter pylori in Sofia, Bulgaria. J Med Microbiol 2000, 49(5):415-418.
34. Megraud F. Resistance of Helicobacter pylori to antibiotics. Aliment Pharmacol Ther 1997, 11(Suppl 1):43-53.
35. Wu H, Shi XD, Wang HT, Liu JX. Resistance of helicobacter pylori to metronidazole, tetracycline and amoxycillin. J Antimicrob Chemother 2000, 46(1):121-123. 10.1093/jac/46.1.121, 10882700.
36. Morris A, Ali MR, Brown P, Lane M, Patton K. Campylobacter pylori infection in biopsy specimens of gastric antrum: laboratory diagnosis and estimation of sampling error. J Clin Pathol 1989, 42(7):727-732. 10.1136/jcp.42.7.727, 1142023, 2474579.
37. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
38. Rotimi O, Cairns A, Gray S, Moayyedi P, Dixon MF. Histological identification of Helicobacter pylori: comparison of staining methods. J Clin Pathol 2000, 53(10):756-759. 10.1136/jcp.53.10.756, 1731087, 11064668.