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Volumn 5, Issue 4, 2012, Pages 104-107

ReportSites - a computational method to extract positional and physico- chemical information from large-scale proteomic post-translational modification datasets

Author keywords

Distribution; Phosphorylation; Protein modification; Software

Indexed keywords

AMINO ACID; PHOSPHOPROTEIN;

EID: 84860903385     PISSN: None     EISSN: 0974276X     Source Type: Journal    
DOI: 10.4172/jpb.1000220     Document Type: Article
Times cited : (3)

References (12)
  • 1
    • 77951644400 scopus 로고    scopus 로고
    • Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis
    • Olsen JV, Vermeulen M, Santamaria A, Kumar C, Miller ML, et al. (2010) Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. Sci Signal 3: ra3.
    • (2010) Sci Signal , vol.3
    • Olsen, J.V.1    Vermeulen, M.2    Santamaria, A.3    Kumar, C.4    Miller, M.L.5
  • 2
    • 77957703553 scopus 로고    scopus 로고
    • High-resolution mapping of prostaglandin E2-dependent signaling networks identifies a constitutively active PKA signaling node in CD8+CD45RO+ T cells
    • Oberprieler NG, Lemeer S, Kalland ME, Torgersen KM, Heck AJ, et al. (2010) High-resolution mapping of prostaglandin E2-dependent signaling networks identifies a constitutively active PKA signaling node in CD8+CD45RO+ T cells. Blood 116: 2253-2265.
    • (2010) Blood , vol.116 , pp. 2253-2265
    • Oberprieler, N.G.1    Lemeer, S.2    Kalland, M.E.3    Torgersen, K.M.4    Heck, A.J.5
  • 3
    • 27944499451 scopus 로고    scopus 로고
    • An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets
    • Schwartz D, Gygi SP (2005) An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets. Nat Biotechnol 23: 1391-1398.
    • (2005) Nat Biotechnol , vol.23 , pp. 1391-1398
    • Schwartz, D.1    Gygi, S.P.2
  • 4
    • 24944519450 scopus 로고    scopus 로고
    • Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns
    • Larsen MR, Thingholm TE, Jensen ON, Roepstorff P, Jørgensen TJ (2005) Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns. Mol Cell Proteomics 4: 873-886.
    • (2005) Mol Cell Proteomics , vol.4 , pp. 873-886
    • Larsen, M.R.1    Thingholm, T.E.2    Jensen, O.N.3    Roepstorff, P.4    Jørgensen, T.J.5
  • 5
    • 78649894034 scopus 로고    scopus 로고
    • Quantitative phosphoproteomic analysis of neuronal intermediate filament proteins (NFM/ H) in Alzheimer's disease by iTRAQ
    • Rudrabhatla P, Grant P, Jaffe H, Strong MJ, Pant HC (2010) Quantitative phosphoproteomic analysis of neuronal intermediate filament proteins (NFM/ H) in Alzheimer's disease by iTRAQ. FASEB J 24: 4396-4407.
    • (2010) FASEB J , vol.24 , pp. 4396-4407
    • Rudrabhatla, P.1    Grant, P.2    Jaffe, H.3    Strong, M.J.4    Pant, H.C.5
  • 6
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157: 105-132.
    • (1982) J Mol Biol , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 7
    • 63049113651 scopus 로고    scopus 로고
    • Analytical strategies for phosphoproteomics
    • Thingholm TE, Jensen ON, Larsen MR (2009) Analytical strategies for phosphoproteomics. Proteomics 9: 1451-1468.
    • (2009) Proteomics , vol.9 , pp. 1451-1468
    • Thingholm, T.E.1    Jensen, O.N.2    Larsen, M.R.3
  • 8
    • 33749853607 scopus 로고    scopus 로고
    • A probabilitybased approach for high-throughput protein phosphorylation analysis and site localization
    • Beausoleil SA, Villen J, Gerber SA, Rush J, Gygi SP (2006) A probabilitybased approach for high-throughput protein phosphorylation analysis and site localization. Nat Biotechnol 24: 1285-1292.
    • (2006) Nat Biotechnol , vol.24 , pp. 1285-1292
    • Beausoleil, S.A.1    Villen, J.2    Gerber, S.A.3    Rush, J.4    Gygi, S.P.5
  • 9
    • 0034666108 scopus 로고    scopus 로고
    • STRING: A web-server to retrieve and display the repeatedly occurring neighbourhood of a gene
    • Snel B, Lehmann G, Bork P, Huynen MA (2000) STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. Nucleic Acids Res 28: 3442-3444.
    • (2000) Nucleic Acids Res , vol.28 , pp. 3442-3444
    • Snel, B.1    Lehmann, G.2    Bork, P.3    Huynen, M.A.4
  • 11
    • 0035514030 scopus 로고    scopus 로고
    • GPMAW--a software tool for analyzing proteins and peptides
    • Peri S, Steen H, Pandey A (2001) GPMAW--a software tool for analyzing proteins and peptides. Trends Biochem Sci 26: 687-689.
    • (2001) Trends Biochem Sci , vol.26 , pp. 687-689
    • Peri, S.1    Steen, H.2    Pandey, A.3
  • 12
    • 65249083361 scopus 로고    scopus 로고
    • Identification of phosphorylation-dependent binding partners of aquaporin-2 using protein mass spectrometry
    • Zwang NA, Hoffert JD, Pisitkun T, Moeller HB, Fenton RA, et al. (2009) Identification of phosphorylation-dependent binding partners of aquaporin-2 using protein mass spectrometry. J Proteome Res 8: 1540-1554.
    • (2009) J Proteome Res , vol.8 , pp. 1540-1554
    • Zwang, N.A.1    Hoffert, J.D.2    Pisitkun, T.3    Moeller, H.B.4    Fenton, R.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.