Cell biology perspectives in phage biology

Frontiers in Bioscience - Elite

Volumn 4 E, Issue 5, 2012, Pages 1823-1829

  Ansaldi, Mireille ^a  

^a AIX MARSEILLE UNIVERSITÉ   (France)

Author keywords

Bacteriophage cycle; Cell Biology; Lysogeny; Review; Viral Replication; Viral Transcription

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; BACTERIOPHAGE DNA; LAMB PROTEIN; MREB PROTEIN; P1 PROTEIN; PHI29 PROTEIN; UNCLASSIFIED DRUG; YAJQ PROTEIN;

ADSORPTION; BACILLUS SUBTILIS; BACTERIAL CELL; BACTERIAL GENOME; BACTERIOPHAGE; BACTERIOPHAGE LAMBDA; BACTERIOPHAGE T7; CELL FATE; CELL SIZE; CYTOLOGY; DNA REPLICATION; ESCHERICHIA COLI; FLUORESCENCE; GENE REPLICATION; GENETIC TRANSCRIPTION; LYSIS; PSEUDOMONAS SYRINGAE; REVIEW; GENETICS; LYSOGENIZATION; PHYSIOLOGY; VIRUS REPLICATION;

BACTERIA (MICROORGANISMS);

BACTERIOPHAGE LAMBDA; CELL BIOLOGY; LYSOGENY; TRANSCRIPTION, GENETIC; VIRUS REPLICATION;

EID: 84860857358     PISSN: 19450494     EISSN: 19450508     Source Type: Journal    
DOI: 10.2741/e503     Document Type: Review

References (57)

1. M. Thanbichler and L. Shapiro: Getting organized - how bacterial cells move proteins and DNA. Nat.Rev.Microbiol. 6, 28-40 (2008) (Pubitemid 350286218)
2. S. Jun and A. Wright: Entropy as the driver of chromosome segregation. Nat.Rev.Microbiol. 8, 600-607 (2010)
3. J. Salje, P. Gayathri and J. Lowe: The ParMRC system: molecular mechanisms of plasmid segregation by actin-like filaments. Nat.Rev.Microbiol. 8, 683-692 (2010)
4. K. Gerdes, M. Howard and F. Szardenings: Pushing and pulling in prokaryotic DNA segregation. Cell 141, 927-942 (2010)
5. E. M. Mauriello, T. Mignot, Z. Yang and D. R. Zusman: Gliding motility revisited: how do the myxobacteria move without flagella? Microbiol.Mol.Biol. Rev. 74, 229-249 (2010)
6. C. Georgopoulos: Toothpicks, serendipity and the emergence of the Escherichia coli DnaK (Hsp70) and GroEL (Hsp60) chaperone machines. Genetics 174, 1699-1707 (2006) (Pubitemid 46011565)
7. K. Hertveldt, R. Lavigne, E. Pleteneva, N. Sernova, L. Kurochkina, R. Korchevskii, J. Robben, V. Mesyanzhinov, V. N. Krylov and G. Volckaert: Genome comparison of Pseudomonas aeruginosa large phages. J.Mol.Biol. 354, 536-545 (2005) (Pubitemid 41628273)
8. M. Ptashne - A genetic switch: phage lambda revisited.Cold Spring Harbor Laboratory Press Cold Spring Harbor (2004)
9. R. Edgar, A. Rokney, M. Feeney, S. Semsey, M. Kessel, M. B. Goldberg, S. Adhya and A. B. Oppenheim: Bacteriophage infection is targeted to cellular poles. Mol.Microbiol. 68, 1107-1116 (2008) (Pubitemid 351670190)
10. R. Edgar, M. McKinstry, J. Hwang, A. B. Oppenheim, R. A. Fekete, G. Giulian, C. Merril, K. Nagashima and S. Adhya: High-sensitivity bacterial detection using biotintagged phage and quantum-dot nanocomplexes. Proc.Natl.Acad.Sci.U.S.A 103, 4841-4845 (2006)
11. L. Randall-Hazelbauer and M. Schwartz: Isolation of the bacteriophage lambda receptor from Escherichia coli. J.Bacteriol. 116, 1436-1446 (1973)
12. T. Schirmer, T. A. Keller, Y. F. Wang and J. P. Rosenbusch: Structural basis for sugar translocation through maltoporin channels at 3.1 A resolution. Science 267, 512-514 (1995)
13. K. A. Gibbs, D. D. Isaac, J. Xu, R. W. Hendrix, T. J. Silhavy and J. A. Theriot: Complex spatial distribution and dynamics of an abundant Escherichia coli outer membrane protein, LamB. Mol.Microbiol. 53, 1771-1783 (2004) (Pubitemid 39265321)
14. D. Scandella and W. Arber: An Escherichia coli mutant which inhibits the injection of phage lambda DNA. Virology 58, 504-513 (1974)
15. J. Elliott and W. Arber: E. coli K-12 pel mutants, which block phage lambda DNA injection, coincide with ptsM, which determines a component of a sugar transport system. Mol.Gen.Genet. 161, 1-8 (1978) (Pubitemid 8324653)
16. N. Williams, D. K. Fox, C. Shea and S. Roseman: Pel, the protein that permits lambda DNA penetration of Escherichia coli, is encoded by a gene in ptsM and is required for mannose utilization by the phosphotransferase system. Proc.Natl.Acad.Sci.U.S.A 83, 8934-8938 (1986) (Pubitemid 17223515)
17. F. Huber and B. Erni: Membrane topology of the mannose transporter of Escherichia coli K12. Eur.J.Biochem. 239, 810-817 (1996) (Pubitemid 26253058)
18. M. E. Gottesman and R. A. Weisberg: Little lambda, who made thee? Microbiol.Mol.Biol.Rev. 68, 796-813 (2004) (Pubitemid 39628537)
19. A. B. Oppenheim, O. Kobiler, J. Stavans, Court DL and S. Adhya: Switches in bacteriophage lambda development. Annu.Rev.Genet. 39, 409-429 (2005) (Pubitemid 43011121)
20. D. Santos and D. F. De Almeida: Isolation and characterization of a new temperature-sensitive cell division mutant of Escherichia coli K-12. J.Bacteriol. 124, 1502-1507 (1975)
21. M. M. Jayasekera, S. K. Foltin, E. R. Olson and T. P. Holler: Escherichia coli requires the protease activity of FtsH for growth. Arch.Biochem.Biophys. 380, 103-107 (2000) (Pubitemid 30616776)
22. C. Herman, D. Thevenet, R. D'Ari and P. Bouloc: Degradation of sigma 32, the heat shock regulator in Escherichia coli, is governed by HflB. Proc.Natl.Acad.Sci.U.S.A 92, 3516-3520 (1995)
23. C. Herman, D. Thevenet, R. D'Ari and P. Bouloc: The HflB protease of Escherichia coli degrades its inhibitor lambda cIII. J.Bacteriol. 179, 358-363 (1997) (Pubitemid 27030387)
24. Y. Shotland, A. Shifrin, T. Ziv, D. Teff, S. Koby, O. Kobiler and A. B. Oppenheim: Proteolysis of bacteriophage lambda CII by Escherichia coli FtsH (HflB). J.Bacteriol. 182, 3111-3116 (2000) (Pubitemid 30326925)
25. G. G. Leffers, Jr. and S. Gottesman: Lambda Xis degradation in vivo by Lon and FtsH. J.Bacteriol. 180, 1573-1577 (1998) (Pubitemid 28125746)
26. P. Kourilsky: Lysogenization by bacteriophage lambda. I. Multiple infection and the lysogenic response. Mol.Gen.Genet. 122, 183-195 (1973)
27. P. Kourilsky: Lysogenization by bacteriophage lambda. II. Identification of genes involved in the multiplicity dependent processes. Biochimie 56, 1511-1516 (1974)
28. P. Kourilsky and A. Knapp: Lysogenization by bacteriophage lambda. III. Multiplicity dependent phenomena occuring upon infection by lambda. Biochimie 56, 1517-1523 (1974)
29. F. St-Pierre and D. Endy: Determination of cell fate selection during phage lambda infection. Proc.Natl.Acad.Sci.U.S.A 105, 20705-20710 (2008)
30. A. Arkin, J. Ross and H. H. McAdams: Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. Genetics 149, 1633-1648 (1998) (Pubitemid 28375939)
31. L. Zeng, S. O. Skinner, C. Zong, J. Sippy, M. Feiss and I. Golding: Decision making at a subcellular level determines the outcome of bacteriophage infection. Cell 141, 682-691 (2010)
32. L. J. Alvarez, P. Thomen, T. Makushok and D. Chatenay: Propagation of fluorescent viruses in growing plaques. Biotechnol.Bioeng. 96, 615-621 (2007) (Pubitemid 46232366)
33. W. J. Meijer, J. A. Horcajadas and M. Salas: Phi29 family of phages. Microbiol.Mol.Biol.Rev. 65, 261-287 (2001)
34. J. L. Carrascosa, E. Vinuela and M. Salas: Proteins induced in Bacillus subtilis infected with bacteriophage phi29. Virology 56, 291-299 (1973)
35. M. R. Inciarte, J. M. Lazaro, M. Salas and E. Vinuela: Physical map of bacteriophage phi29 DNA. Virology 74, 314-323 (1976)
36. M. Salas: A new mechanism for the initiation of replication of phi 29 and adenovirus DNA: priming by the terminal protein. Curr.Top.Microbiol.Immunol. 109, 89-106 (1984)
37. M. Salas: Initiation of DNA replication by primer proteins: bacteriophage phi 29 and its relatives. Curr.Top.Microbiol.Immunol. 136, 71-88 (1988)
38. M. Salas: Protein-priming of DNA replication. Annu.Rev.Biochem. 60, 39-71 (1991)
39. L. Blanco, J. M. Lazaro, V. M. de, A. Bonnin and M. Salas: Terminal protein-primed DNA amplification. Proc.Natl.Acad.Sci.U.S.A 91, 12198-12202 (1994) (Pubitemid 24368632)
40. W. J. Meijer, P. J. Lewis, J. Errington and M. Salas: Dynamic relocalization of phage phi 29 DNA during replication and the role of the viral protein p16.7. EMBO J. 19, 4182-4190 (2000) (Pubitemid 30608556)
41. W. J. Meijer, A. Serna-Rico and M. Salas: Characterization of the bacteriophage phi29-encoded protein p16.7: a membrane protein involved in phage DNA replication. Mol.Microbiol. 39, 731-746 (2001) (Pubitemid 32158151)
42. R. Carballido-Lopez and J. Errington: A dynamic bacterial cytoskeleton. Trends Cell Biol. 13, 577-583 (2003) (Pubitemid 37311397)
43. L. J. Jones, R. Carballido-Lopez and J. Errington: Control of cell shape in bacteria: helical, actin-like filaments in Bacillus subtilis. Cell 104, 913-922 (2001) (Pubitemid 32289283)
44. R. A. Daniel and J. Errington: Control of cell morphogenesis in bacteria: two distinct ways to make a rod-shaped cell. Cell 113, 767-776 (2003) (Pubitemid 36724940)
45. D. Munoz-Espin, R. Daniel, Y. Kawai, R. Carballido-Lopez, V. Castilla-Llorente, J. Errington, W. J. Meijer and M. Salas: The actin-like MreB cytoskeleton organizes viral DNA replication in bacteria. Proc.Natl.Acad.Sci.U. S.A 106, 13347-13352 (2009)
46. D. Munoz-Espin, I. Holguera, D. Ballesteros-Plaza, R. Carballido-Lopez and M. Salas: Viral terminal protein directs early organization of phage DNA replication at the bacterial nucleoid. Proc.Natl.Acad.Sci.U.S.A 107, 16548-16553 (2010)
47. L. Mindich: Bacteriophage phi 6: a unique virus having a lipid-containing membrane and a genome composed of three dsRNA segments. Adv.Virus Res. 35, 137-176 (1988)
48. L. Mindich, X. Qiao, J. Qiao, S. Onodera, M. Romantschuk and D. Hoogstraten: Isolation of additional bacteriophages with genomes of segmented doublestranded RNA. J.Bacteriol. 181, 4505-4508 (1999) (Pubitemid 29357929)
49. L. Mindich: Packaging, replication and recombination of the segmented genome of bacteriophage Phi6 and its relatives. Virus Res. 101, 83-92 (2004) (Pubitemid 38317111)
50. X. Qiao, Y. Sun, J. Qiao and L. Mindich: The role of host protein YajQ in the temporal control of transcription in bacteriophage Phi6. Proc.Natl.Acad.Sci.U.S.A 105, 15956-15960 (2008)
51. X. Qiao, Y. Sun, J. Qiao and L. Mindich: Interaction of a host protein with core complexes of bacteriophage phi6 to control transcription. J.Virol. 84, 4821-4825 (2010)
52. J. Qiao, X. Qiao, Y. Sun and L. Mindich: Role of host protein glutaredoxin 3 in the control of transcription during bacteriophage Phi2954 infection. Proc.Natl.Acad.Sci.U.S.A 107, 6000-6004 (2010)
53. Phages, their role in bacterial pathogenesis and biotechnology.Waldor, M. K., Friedman, D. I., and Adhya, S. ASM Press Washington, DC (2005)
54. T. Funatsu, T. Taniyama, T. Tajima, H. Tadakuma and H. Namiki: Rapid and sensitive detection method of a bacterium by using a GFP reporter phage. Microbiol.Immunol. 46, 365-369 (2002) (Pubitemid 34712854)
55. Bardarov S Jr, H. Dou, K. Eisenach, N. Banaiee, S. Ya, J. Chan, W. R. Jacobs, Jr. and P. F. Riska: Detection and drug-susceptibility testing of M. tuberculosis from sputum samples using luciferase reporter phage: comparison with the Mycobacteria Growth Indicator Tube (MGIT) system. Diagn.Microbiol. Infect.Dis. 45, 53-61 (2003) (Pubitemid 36165030)
56. S. Ripp: Bacteriophage-based pathogen detection. Adv.Biochem.Eng Biotechnol. 118, 65-83 (2010)
57. N. H. Mann: The third age of phage. PLoS.Biol. 3, e182 (2005)