Viral terminal protein directs early organization of phage DNA replication at the bacterial nucleoid

Proceedings of the National Academy of Sciences of the United States of America

Volumn 107, Issue 38, 2010, Pages 16548-16553

  Muñoz Espín, Daniel ^a   Holguera, Isabel ^a   Ballesteros Plaza, David ^a   Carballido López, Rut ^b   Salas, Margarita ^a  

^a CSIC   (Spain)

^b UMR1319 MICALIS   (France)

Author keywords

Bacillus subtilis; Bacterial cytoskeleton; Dna polymerase; DNA binding; Phage 29

Indexed keywords

BACTERIOPHAGE DNA; DNA POLYMERASE; TERMINAL PROTEIN; UNCLASSIFIED DRUG; VIRUS PROTEIN; DNA DIRECTED DNA POLYMERASE; DNA TERMINAL PROTEIN, ENTEROBACTERIA PHAGE PRD1; HYBRID PROTEIN; TERMINAL PROTEIN, BACILLUS PHAGE PHI29; VIRUS DNA;

AMINO TERMINAL SEQUENCE; ARTICLE; BACILLUS SUBTILIS; BACTERIOPHAGE; BACTERIOPHAGE PRD1; CELL NUCLEUS; CELLULAR DISTRIBUTION; DNA BINDING; DNA REPLICATION; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN LOCALIZATION; VIRUS CELL INTERACTION; BACILLUS PHAGE; BACTERIAL GENE; BIOLOGICAL MODEL; BIOSYNTHESIS; CHEMICAL STRUCTURE; CHEMISTRY; ENTEROBACTERIA PHAGE PRD1; GENETICS; METABOLISM; MUTATION; PHYSIOLOGY; PROTEIN TERTIARY STRUCTURE; VIROLOGY; VIRUS GENE; VIRUS REPLICATION;

BACILLUS PHAGE PHI29; BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

BACILLUS PHAGES; BACILLUS SUBTILIS; BACTERIOPHAGE PRD1; DNA REPLICATION; DNA, VIRAL; DNA-DIRECTED DNA POLYMERASE; ESCHERICHIA COLI; GENES, BACTERIAL; GENES, VIRAL; MODELS, BIOLOGICAL; MODELS, MOLECULAR; MUTATION; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT FUSION PROTEINS; VIRAL PROTEINS; VIRUS REPLICATION;

EID: 78049233242     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1010530107     Document Type: Article

References (33)

1. Salas M (1991) Protein-priming of DNA replication. Annu Rev Biochem 60:39-71.
2. Salas M (1999) Mechanisms of initiation of linear DNA replication in prokaryotes. Genet Eng (N Y) 21:159-171.
3. de Jong RN, van der Vliet PC, Brenkman AB (2003) Adenovirus DNA replication: Protein priming, jumping back and the role of the DNA binding protein DBP. Curr Top Microbiol Immunol 272:187-211. (Pubitemid 36458329)
4. Chaconas G, Chen CW (2005) The Bacterial Chromosome, ed Higgins NP (American Society for Microbiology Press, Washington, DC), pp 525-539.
5. Bamford DH, et al. (2005) Constituents of SH1, a novel lipid-containing virus infecting the halophilic euryarchaeon Haloarcula hispanica. J Virol 79:9097-9107.
6. Bath C, Cukalac T, Porter K, Dyall-Smith ML (2006) His1 and His2 are distantly related, spindle-shaped haloviruses belonging to the novel virus group, Salterprovirus. Virology 350:228-239. (Pubitemid 43850590)
7. Peng X, Basta T, Häring M, Garrett RA, Prangishvili D (2007) Genome of the Acidianus bottle-shaped virus and insights into the replication and packaging mechanisms. Virology 364:237-243. (Pubitemid 46829289)
8. + ions on φ29 DNA-protein p3 replication: Formation of a complex between the terminal protein and the DNA polymerase. J Virol 61:3983-3991.
9. Rojo F, Mencía M, Monsalve M, Salas M (1998) Transcription activation and repression by interaction of a regulator with the α subunit of RNA polymerase: The model of phage φ29 protein p4. Prog Nucleic Acid Res Mol Biol 60:29-46.
10. Carballido-López R (2006) The bacterial actin-like cytoskeleton. Microbiol Mol Biol Rev 70:888-909.
11. Muñoz-Espín D, et al. (2009) The actin-like MreB cytoskeleton organizes viral DNA replication in bacteria. Proc Natl Acad Sci USA 106:13347-13352.
12. Kamtekar S, et al. (2006) The φ29 DNA polymerase:protein-primer structure suggests a model for the initiation to elongation transition. EMBO J 25:1335-1343.
13. Zaballos A, Salas M (1989) Functional domains in the bacteriophage φ29 terminal protein for interaction with the φ29 DNA polymerase and with DNA. Nucleic Acids Res 17:10353-10366. (Pubitemid 20012190)
14. Serna-Rico A, Illana B, Salas M, Meijer WJJ (2000) The putative coiled coil domain of the φ29 terminal protein is a major determinant involved in recognition of the origin of replication. J Biol Chem 275:40529-40538. (Pubitemid 32064690)
15. González-Huici V, Lázaro JM, Salas M, Hermoso JM (2000) Specific recognition of parental terminal protein by DNA polymerase for initiation of protein-primed DNA replication. J Biol Chem 275:14678-14683. (Pubitemid 30339759)
16. González-Huici V, Alcorlo M, Salas M, Hermoso JM (2004) Binding of phage φ29 architectural protein p6 to the viral genome: Evidence for topological restriction of the phage linear DNA. Nucleic Acids Res 32:3493-3502. (Pubitemid 39117466)
17. Berlatzky IA, Rouvinski A, Ben-Yehuda S (2008) Spatial organization of a replicating bacterial chromosome. Proc Natl Acad Sci USA 105:14136-14140.
18. Kruse T, Møller-Jensen J, Løbner-Olesen A, Gerdes K (2003) Dysfunctional MreB inhibits chromosome segregation in Escherichia coli. EMBO J 22:5283-5292. (Pubitemid 37222047)
19. Kruse T, et al. (2006) Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli. Genes Dev 20:113-124. (Pubitemid 43042672)
20. Gitai Z, Dye NA, Reisenauer A, Wachi M, Shapiro L (2005) MreB actin-mediated segregation of a specific region of a bacterial chromosome. Cell 120:329-341. (Pubitemid 40222428)
21. Soufo HJ, Graumann PL (2003) Actin-like proteins MreB and Mbl from Bacillus subtilis are required for bipolar positioning of replication origins. Curr Biol 13:1916-1920.
22. Defeu Soufo HJ, Graumann PL (2005) Bacillus subtilis actin-like protein MreB influences the positioning of the replication machinery and requires membrane proteins MreC/D and other actin-like proteins for proper localization. BMC Cell Biol 6:10.
23. Formstone A, Errington J (2005) A magnesium-dependent mreB null mutant: Implications for the role of mreB in Bacillus subtilis. Mol Microbiol 55:1646-1657. (Pubitemid 40445203)
24. Schaack J, Ho WY, Freimuth P, Shenk T (1990) Adenovirus terminal protein mediates both nuclear matrix association and efficient transcription of adenovirus DNA. Genes Dev 4:1197-1208.
25. Fredman JN, Engler JA (1993) Adenovirus precursor to terminal protein interacts with the nuclear matrix in vivo and in vitro. J Virol 67:3384-3395.
26. de Jong RN, Meijer LA, van der Vliet PC (2003) DNA binding properties of the adenovirus DNA replication priming protein pTP. Nucleic Acids Res 31:3274-3286.
27. Pérez-Arnaiz P, et al. (2007) Involvement of phage φ29 DNA polymerase and terminal protein subdomains in conferring specificity during initiation of protein-primed DNA replication. Nucleic Acids Res 35:7061-7073.
28. Castilla-Llorente V, Muñoz-Espín D, Villar L, Salas M, Meijer WJJ (2006) Spo0A, the key transcriptional regulator for entrance into sporulation, is an inhibitor of DNA replication. EMBO J 25:3890-3899.
29. Yamashita S, et al. (1989) Dissection of the expression signals of the spoA gene of Bacillus subtilis: Glucose represses sporulation-specific expression. J Gen Microbiol 135:1335-1345.
30. Muñoz-Espín D, et al. (2004) Phage φ29 DNA replication organizer membrane protein p16.7 contains a coiled coil and a dimeric, homeodomain-related, functional domain. J Biol Chem 279:50437-50445.
31. Asensio JL, et al. (2005) Structure of the functional domain of φ29 replication organizer: Insights into oligomerization and DNA binding. J Biol Chem 280:20730-20739.
32. Lewis PJ, Errington J (1997) Direct evidence for active segregation of oriC regions of the Bacillus subtilis chromosome and co-localization with the SpoOJ partitioning protein. Mol Microbiol 25:945-954.
33. González-Huici V, Salas M, Hermoso JM (2004) The push-pull mechanism of bacteriophage φ29 DNA injection. Mol Microbiol 52:529-540.