-
1
-
-
0038719686
-
Reb1p-dependent DNA bending effects nucleosome positioning and constitutive transcription at the yeast profilin promoter
-
Angermayr M., Oechsner U., Bandlow W. Reb1p-dependent DNA bending effects nucleosome positioning and constitutive transcription at the yeast profilin promoter. J. Biol. Chem. 2003, 278:17918-17926.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 17918-17926
-
-
Angermayr, M.1
Oechsner, U.2
Bandlow, W.3
-
2
-
-
57749121616
-
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters
-
Badis G., Chan E.T., van Bakel H., Pena-Castillo L., Tillo D., Tsui K., Carlson C.D., Gossett A.J., Hasinoff M.J., Warren C.L., et al. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol. Cell 2008, 32:878-887.
-
(2008)
Mol. Cell
, vol.32
, pp. 878-887
-
-
Badis, G.1
Chan, E.T.2
van Bakel, H.3
Pena-Castillo, L.4
Tillo, D.5
Tsui, K.6
Carlson, C.D.7
Gossett, A.J.8
Hasinoff, M.J.9
Warren, C.L.10
-
3
-
-
79955950854
-
Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter
-
Bai L., Ondracka A., Cross F.R. Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter. Mol. Cell 2011, 42:465-476.
-
(2011)
Mol. Cell
, vol.42
, pp. 465-476
-
-
Bai, L.1
Ondracka, A.2
Cross, F.R.3
-
4
-
-
63449105244
-
Intrinsic variability of gene expression encoded in nucleosome positioning sequences
-
Choi J.K., Kim Y.-J. Intrinsic variability of gene expression encoded in nucleosome positioning sequences. Nat. Genet. 2009, 41:498-503.
-
(2009)
Nat. Genet.
, vol.41
, pp. 498-503
-
-
Choi, J.K.1
Kim, Y.-J.2
-
5
-
-
57149119464
-
Distinct modes of regulation by chromatin encoded through nucleosome positioning signals
-
Field Y., Kaplan N., Fondufe-Mittendorf Y., Moore I.K., Sharon E., Lubling Y., Widom J., Segal E. Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comput. Biol. 2008, 4:e1000216.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Field, Y.1
Kaplan, N.2
Fondufe-Mittendorf, Y.3
Moore, I.K.4
Sharon, E.5
Lubling, Y.6
Widom, J.7
Segal, E.8
-
6
-
-
65249164132
-
Mechanisms that specify promoter nucleosome location and identity
-
Hartley P.D., Madhani H.D. Mechanisms that specify promoter nucleosome location and identity. Cell 2009, 137:445-458.
-
(2009)
Cell
, vol.137
, pp. 445-458
-
-
Hartley, P.D.1
Madhani, H.D.2
-
7
-
-
34250785284
-
Genetic properties influencing the evolvability of gene expression
-
Landry C.R., Lemos B., Rifkin S.A., Dickinson W.J., Hartl D.L. Genetic properties influencing the evolvability of gene expression. Science 2007, 317:118-121.
-
(2007)
Science
, vol.317
, pp. 118-121
-
-
Landry, C.R.1
Lemos, B.2
Rifkin, S.A.3
Dickinson, W.J.4
Hartl, D.L.5
-
8
-
-
33645769260
-
An improved map of conserved regulatory sites for Saccharomyces cerevisiae
-
MacIsaac K.D., Wang T., Gordon D.B., Gifford D.K., Stormo G.D., Fraenkel E. An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics 2006, 7:113.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 113
-
-
MacIsaac, K.D.1
Wang, T.2
Gordon, D.B.3
Gifford, D.K.4
Stormo, G.D.5
Fraenkel, E.6
-
9
-
-
78649298722
-
TATA is a modular component of synthetic promoters
-
Mogno I., Vallania F., Mitra R.D., Cohen B.A. TATA is a modular component of synthetic promoters. Genome Res. 2010, 20:1391-1397.
-
(2010)
Genome Res.
, vol.20
, pp. 1391-1397
-
-
Mogno, I.1
Vallania, F.2
Mitra, R.D.3
Cohen, B.A.4
-
10
-
-
26844511498
-
Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin
-
Raisner R.M., Hartley P.D., Meneghini M.D., Bao M.Z., Liu C.L., Schreiber S.L., Rando O.J., Madhani H.D. Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin. Cell 2005, 123:233-248.
-
(2005)
Cell
, vol.123
, pp. 233-248
-
-
Raisner, R.M.1
Hartley, P.D.2
Meneghini, M.D.3
Bao, M.Z.4
Liu, C.L.5
Schreiber, S.L.6
Rando, O.J.7
Madhani, H.D.8
-
11
-
-
77954743785
-
Mutational effects and the evolution of new protein functions
-
Soskine M., Tawfik D.S. Mutational effects and the evolution of new protein functions. Nat. Rev. Genet. 2010, 11:572-582.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 572-582
-
-
Soskine, M.1
Tawfik, D.S.2
-
12
-
-
33746691336
-
Extensive low-affinity transcriptional interactions in the yeast genome
-
Tanay A. Extensive low-affinity transcriptional interactions in the yeast genome. Genome Res. 2006, 16:962-972.
-
(2006)
Genome Res.
, vol.16
, pp. 962-972
-
-
Tanay, A.1
-
13
-
-
39649122611
-
Evolution of gene sequence and gene expression are not correlated in yeast
-
Tirosh I., Barkai N. Evolution of gene sequence and gene expression are not correlated in yeast. Trends Genet. 2008, 24:109-113.
-
(2008)
Trends Genet.
, vol.24
, pp. 109-113
-
-
Tirosh, I.1
Barkai, N.2
-
14
-
-
43749088127
-
Two strategies for gene regulation by promoter nucleosomes
-
Tirosh I., Barkai N. Two strategies for gene regulation by promoter nucleosomes. Genome Res. 2008, 18:1084-1091.
-
(2008)
Genome Res.
, vol.18
, pp. 1084-1091
-
-
Tirosh, I.1
Barkai, N.2
-
15
-
-
33745583768
-
A genetic signature of interspecies variations in gene expression
-
Tirosh I., Weinberger A., Carmi M., Barkai N. A genetic signature of interspecies variations in gene expression. Nat. Genet. 2006, 38:830-834.
-
(2006)
Nat. Genet.
, vol.38
, pp. 830-834
-
-
Tirosh, I.1
Weinberger, A.2
Carmi, M.3
Barkai, N.4
-
16
-
-
74549187509
-
Promoter architecture and the evolvability of gene expression
-
Tirosh I., Barkai N., Verstrepen K.J. Promoter architecture and the evolvability of gene expression. J. Biol. 2009, 8:95.
-
(2009)
J. Biol.
, vol.8
, pp. 95
-
-
Tirosh, I.1
Barkai, N.2
Verstrepen, K.J.3
-
17
-
-
65549086559
-
A yeast hybrid provides insight into the evolution of gene expression regulation
-
Tirosh I., Reikhav S., Levy A.A., Barkai N. A yeast hybrid provides insight into the evolution of gene expression regulation. Science 2009, 324:659-662.
-
(2009)
Science
, vol.324
, pp. 659-662
-
-
Tirosh, I.1
Reikhav, S.2
Levy, A.A.3
Barkai, N.4
-
18
-
-
83255187902
-
Evolution of nucleosome occupancy: conservation of global properties and divergence of gene-specific patterns
-
Tsui K., Dubuis S., Gebbia M., Morse R.H., Barkai N., Tirosh I., Nislow C. Evolution of nucleosome occupancy: conservation of global properties and divergence of gene-specific patterns. Mol. Cell. Biol. 2011, 31:4348-4355.
-
(2011)
Mol. Cell. Biol.
, vol.31
, pp. 4348-4355
-
-
Tsui, K.1
Dubuis, S.2
Gebbia, M.3
Morse, R.H.4
Barkai, N.5
Tirosh, I.6
Nislow, C.7
-
19
-
-
66349113764
-
Unstable tandem repeats in promoters confer transcriptional evolvability
-
Vinces M.D., Legendre M., Caldara M., Hagihara M., Verstrepen K.J. Unstable tandem repeats in promoters confer transcriptional evolvability. Science 2009, 324:1213-1216.
-
(2009)
Science
, vol.324
, pp. 1213-1216
-
-
Vinces, M.D.1
Legendre, M.2
Caldara, M.3
Hagihara, M.4
Verstrepen, K.J.5
-
20
-
-
84855306788
-
A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast
-
Zaugg J.B., Luscombe N.M. A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast. Genome Res. 2012, 22:84-94.
-
(2012)
Genome Res.
, vol.22
, pp. 84-94
-
-
Zaugg, J.B.1
Luscombe, N.M.2
|