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Volumn 55, Issue 4, 2012, Pages 328-335

A new pattern-based method for identifying recent HIV-1 infections from the viral env sequence

Author keywords

determination of HIV recent infections; estimation of population incidence; pattern based distance; viral genetic diversity

Indexed keywords

COMPLEMENTARY DNA; VIRUS ENVELOPE PROTEIN; VIRUS RNA;

EID: 84860710266     PISSN: 16747305     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11427-012-4312-0     Document Type: Article
Times cited : (13)

References (25)
  • 1
    • 48749117983 scopus 로고    scopus 로고
    • Estimation of HIV incidence in the United States
    • Hall H I, Song R, Rhodes P, et al. Estimation of HIV incidence in the United States. JAMA, 2008, 300: 520-529.
    • (2008) Jama , vol.300 , pp. 520-529
    • Hall, H.I.1    Song, R.2    Rhodes, P.3
  • 2
    • 77954970838 scopus 로고    scopus 로고
    • Measuring the HIV/AIDS epidemic: approaches and challenges
    • Brookmeyer R. Measuring the HIV/AIDS epidemic: approaches and challenges. Epidemiol Rev, 2010, 32: 26-37.
    • (2010) Epidemiol Rev , vol.32 , pp. 26-37
    • Brookmeyer, R.1
  • 3
    • 2942529088 scopus 로고    scopus 로고
    • Performance characteristics of the immunoglobulin G-capture BED-enzyme immunoassay, an assay to detect recent human immunodeficiency virus type 1 seroconversion
    • Dobbs T, Kennedy S, Pau CP, et al. Performance characteristics of the immunoglobulin G-capture BED-enzyme immunoassay, an assay to detect recent human immunodeficiency virus type 1 seroconversion. J Clin Microbiol, 2004, 42: 2623-2628.
    • (2004) J Clin Microbiol , vol.42 , pp. 2623-2628
    • Dobbs, T.1    Kennedy, S.2    Pau, C.P.3
  • 4
    • 71849099139 scopus 로고    scopus 로고
    • Accuracy of serological assays for detection of recent infection with HIV and estimation of population incidence: a systematic review
    • Guy R, Gold J, Calleja J M, et al. Accuracy of serological assays for detection of recent infection with HIV and estimation of population incidence: a systematic review. Lancet Infect Dis, 2009, 9: 747-759.
    • (2009) Lancet Infect Dis , vol.9 , pp. 747-759
    • Guy, R.1    Gold, J.2    Calleja, J.M.3
  • 5
    • 39849103123 scopus 로고    scopus 로고
    • Improved HIV-1 incidence estimates using the BED capture enzyme immunoassay
    • Hargrove J W, Humphrey J H, Mutasa K, et al. Improved HIV-1 incidence estimates using the BED capture enzyme immunoassay. AIDS, 2008, 22: 511-518.
    • (2008) Aids , vol.22 , pp. 511-518
    • Hargrove, J.W.1    Humphrey, J.H.2    Mutasa, K.3
  • 6
    • 38149081983 scopus 로고    scopus 로고
    • Comparison of the human immunodeficiency virus (HIV) type 1-specific immunoglobulin G capture enzyme-linked immunosorbent assay and the avidity index method for identification of recent HIV infections
    • Loschen S, Batzing-Feigenbaum J, Poggensee G, et al. Comparison of the human immunodeficiency virus (HIV) type 1-specific immunoglobulin G capture enzyme-linked immunosorbent assay and the avidity index method for identification of recent HIV infections. J Clin Microbiol, 2008, 46: 341-345.
    • (2008) J Clin Microbiol , vol.46 , pp. 341-345
    • Loschen, S.1    Batzing-Feigenbaum, J.2    Poggensee, G.3
  • 7
    • 33847014565 scopus 로고    scopus 로고
    • Investigating the utility of the HIV-1 BED capture enzyme immunoassay using cross-sectional and longitudinal seroconverter specimens from Africa
    • Karita E, Price M, Hunter E, et al. Investigating the utility of the HIV-1 BED capture enzyme immunoassay using cross-sectional and longitudinal seroconverter specimens from Africa. AIDS, 2007, 21: 403-408.
    • (2007) Aids , vol.21 , pp. 403-408
    • Karita, E.1    Price, M.2    Hunter, E.3
  • 8
    • 41449111229 scopus 로고    scopus 로고
    • Effects of low HIV type 1 load and antiretroviral treatment on IgG-capture BED-enzyme immunoassay
    • Hayashida T, Gatanaga H, Tanuma J, et al. Effects of low HIV type 1 load and antiretroviral treatment on IgG-capture BED-enzyme immunoassay. AIDS Res Hum Retroviruses, 2008, 24: 495-498.
    • (2008) AIDS Res Hum Retroviruses , vol.24 , pp. 495-498
    • Hayashida, T.1    Gatanaga, H.2    Tanuma, J.3
  • 9
    • 84921707947 scopus 로고    scopus 로고
    • UNAIDS Reference Group on estimates, modelling and projections-statement on the use of the BED assay for the estimation of HIV-1 incidence for surveillance or epidemic monitoring
    • UNAIDS Reference Group
    • UNAIDS Reference Group. UNAIDS Reference Group on estimates, modelling and projections-statement on the use of the BED assay for the estimation of HIV-1 incidence for surveillance or epidemic monitoring. Wkly Epidemiol Rec, 2006, 81: 40.
    • (2006) Wkly Epidemiol Rec , vol.81 , pp. 40
  • 10
    • 32444450252 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 env evolves toward ancestral states upon transmission to a new host
    • Herbeck J T, Nickle D C, Learn G H, et al. Human immunodeficiency virus type 1 env evolves toward ancestral states upon transmission to a new host. J Virol, 2006, 80: 1637-1644.
    • (2006) J Virol , vol.80 , pp. 1637-1644
    • Herbeck, J.T.1    Nickle, D.C.2    Learn, G.H.3
  • 11
    • 0032710838 scopus 로고    scopus 로고
    • Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection
    • Shankarappa R, Margolick J B, Gange S J, et al. Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection. J Virol, 1999, 73: 10489-10502.
    • (1999) J Virol , vol.73 , pp. 10489-10502
    • Shankarappa, R.1    Margolick, J.B.2    Gange, S.J.3
  • 12
    • 70349778470 scopus 로고    scopus 로고
    • Modeling sequence evolution in acute HIV-1 infection
    • Lee H Y, Giorgi E E, Keele B F, et al: Modeling sequence evolution in acute HIV-1 infection. J Theor Biol, 2009, 261: 341-360.
    • (2009) J Theor Biol , vol.261 , pp. 341-360
    • Lee, H.Y.1    Giorgi, E.E.2    Keele, B.F.3
  • 13
    • 0034625771 scopus 로고    scopus 로고
    • Timing the ancestor of the HIV-1 pandemic strains
    • Korber B, Muldoon M, Theiler J, et al. Timing the ancestor of the HIV-1 pandemic strains. Science, 2000, 288: 1789-1796.
    • (2000) Science , vol.288 , pp. 1789-1796
    • Korber, B.1    Muldoon, M.2    Theiler, J.3
  • 14
    • 53349127137 scopus 로고    scopus 로고
    • Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960
    • Worobey M, Gemmel M, Teuwen D E, et al. Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960. Nature, 2008, 455: 661-664.
    • (2008) Nature , vol.455 , pp. 661-664
    • Worobey, M.1    Gemmel, M.2    Teuwen, D.E.3
  • 15
    • 0035967994 scopus 로고    scopus 로고
    • Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution
    • Yusim K, Peeters M, Pybus O G, et al. Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution. Philos Trans R Soc Lond B Biol Sci, 2001, 356: 855-866.
    • (2001) Philos Trans R Soc Lond B Biol Sci , vol.356 , pp. 855-866
    • Yusim, K.1    Peeters, M.2    Pybus, O.G.3
  • 16
    • 44649102135 scopus 로고    scopus 로고
    • Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
    • Keele B F, Giorgi E E, Salazar-Gonzalez J F, et al. Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection. Proc Natl Acad Sci USA, 2008, 105: 7552-7557.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 7552-7557
    • Keele, B.F.1    Giorgi, E.E.2    Salazar-Gonzalez, J.F.3
  • 17
    • 70349789710 scopus 로고    scopus 로고
    • Estimating mutation distances from unaligned genomes
    • Haubold B, Pfaffelhuber P, Domazet-Loso M, et al. Estimating mutation distances from unaligned genomes. J Comput Biol, 2009, 16: 1487-1500.
    • (2009) J Comput Biol , vol.16 , pp. 1487-1500
    • Haubold, B.1    Pfaffelhuber, P.2    Domazet-Loso, M.3
  • 18
    • 34347204435 scopus 로고    scopus 로고
    • HIV incidence, retention rate, and baseline predictors of HIV incidence and retention in a prospective cohort study of injection drug users in Xinjiang, China
    • Zhang Y, Shan H, Trizzino J, et al. HIV incidence, retention rate, and baseline predictors of HIV incidence and retention in a prospective cohort study of injection drug users in Xinjiang, China. Int J Infect Dis, 2007, 11: 318-323.
    • (2007) Int J Infect Dis , vol.11 , pp. 318-323
    • Zhang, Y.1    Shan, H.2    Trizzino, J.3
  • 19
    • 19944428265 scopus 로고    scopus 로고
    • Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis
    • Palmer S, Kearney M, Maldarelli F, et al. Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis. J Clin Microbiol, 2005, 43: 406-413.
    • (2005) J Clin Microbiol , vol.43 , pp. 406-413
    • Palmer, S.1    Kearney, M.2    Maldarelli, F.3
  • 21
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 1985, 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 22
    • 77954599953 scopus 로고    scopus 로고
    • AIDS response at a crossroads
    • Justman J, El-Sadr W M. AIDS response at a crossroads. Science, 2010, 329: 120.
    • (2010) Science , vol.329 , pp. 120
    • Justman, J.1    El-Sadr, W.M.2
  • 24
    • 66549095163 scopus 로고    scopus 로고
    • Errors in 'BED'-derived estimates of HIV incidence will vary by place, time and age
    • Hallett T B, Ghys P, Barnighausen T, et al. Errors in 'BED'-derived estimates of HIV incidence will vary by place, time and age. PLoS ONE, 2009, 4: e5720.
    • (2009) PLoS ONE , vol.4
    • Hallett, T.B.1    Ghys, P.2    Barnighausen, T.3
  • 25
    • 80055021844 scopus 로고    scopus 로고
    • Designing a genome-based HIV incidence assay with high sensitivity and specificity
    • Park S Y, Love T M, Nelson J, et al. Designing a genome-based HIV incidence assay with high sensitivity and specificity. AIDS, 2011, 25: 1-7.
    • (2011) Aids , vol.25 , pp. 1-7
    • Park, S.Y.1    Love, T.M.2    Nelson, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.