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Volumn 7, Issue 4, 2012, Pages

miRNAs expression analysis in paired fresh/Frozen and dissected formalin fixed and paraffin embedded glioblastoma using real-time PCR

(144)  de Biase, Dario a   Visani, Michela a   Morandi, Luca a   Marucci, Gianluca a   Taccioli, Cristian b   Cerasoli, Serenella c   Baruzzi, Agostino d   Pession, Annalisa a   Baruzzi, A e   Albani, F e   Calbucci, F e   D'Alessandro, R e   Michelucci, R e   Brandes, A f   Eusebi, V g   Ceruti, S h   Fainardi, E h   Tamarozzi, R h   Emiliani, E i   Cavallo, M h   more..


Author keywords

[No Author keywords available]

Indexed keywords

FORMALDEHYDE; MICRORNA;

EID: 84859968931     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0035596     Document Type: Article
Times cited : (33)

References (43)
  • 1
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros V, (2004) The functions of animal microRNAs. Nature 431: 350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 2
    • 40349100260 scopus 로고    scopus 로고
    • MicroRNAs and cancer
    • Dalmay T, (2008) MicroRNAs and cancer. J Intern Med 263: 366-375.
    • (2008) J Intern Med , vol.263 , pp. 366-375
    • Dalmay, T.1
  • 3
    • 23844555119 scopus 로고    scopus 로고
    • MicroRNA gene expression deregulation in human breast cancer
    • Iorio MV, Ferracin M, Liu CG, Veronese A, Spizzo R, et al. (2005) MicroRNA gene expression deregulation in human breast cancer. Cancer Res 65: 7065-7070.
    • (2005) Cancer Res , vol.65 , pp. 7065-7070
    • Iorio, M.V.1    Ferracin, M.2    Liu, C.G.3    Veronese, A.4    Spizzo, R.5
  • 5
    • 79957484812 scopus 로고    scopus 로고
    • A miRNA expression signature that separates between normal and malignant prostate tissues
    • Carlsson J, Davidsson S, Helenius G, Karlsson M, Lubovac Z, et al. (2011) A miRNA expression signature that separates between normal and malignant prostate tissues. Cancer Cell Int 11: 14.
    • (2011) Cancer Cell Int , vol.11 , pp. 14
    • Carlsson, J.1    Davidsson, S.2    Helenius, G.3    Karlsson, M.4    Lubovac, Z.5
  • 6
    • 79959923298 scopus 로고    scopus 로고
    • MicroRNAs and lung cancer: from markers to targets
    • Sozzi G, Pastorino U, Croce CM, (2011) MicroRNAs and lung cancer: from markers to targets. Cell Cycle 10: 2045-2046.
    • (2011) Cell Cycle , vol.10 , pp. 2045-2046
    • Sozzi, G.1    Pastorino, U.2    Croce, C.M.3
  • 9
    • 80052634162 scopus 로고    scopus 로고
    • Impact of therapy on quality of life, neurocognitive function and their correlates in glioblastoma multiforme: a review
    • Henriksson R, Asklund T, Poulsen HS, (2011) Impact of therapy on quality of life, neurocognitive function and their correlates in glioblastoma multiforme: a review. J Neurooncol 104: 639-646.
    • (2011) J Neurooncol , vol.104 , pp. 639-646
    • Henriksson, R.1    Asklund, T.2    Poulsen, H.S.3
  • 10
    • 66949150988 scopus 로고    scopus 로고
    • MiR-92b and miR-9/9* are specifically expressed in brain primary tumors and can be used to differentiate primary from metastatic brain tumors
    • Nass D, Rosenwald S, Meiri E, Gilad S, Tabibian-Keissar H, et al. (2009) MiR-92b and miR-9/9* are specifically expressed in brain primary tumors and can be used to differentiate primary from metastatic brain tumors. Brain Pathol 19: 375-383.
    • (2009) Brain Pathol , vol.19 , pp. 375-383
    • Nass, D.1    Rosenwald, S.2    Meiri, E.3    Gilad, S.4    Tabibian-Keissar, H.5
  • 11
    • 77950824571 scopus 로고    scopus 로고
    • Identification and functional characterization of microRNAs involved in the malignant progression of gliomas
    • Malzkorn B, Wolter M, Liesenberg F, Grzendowski M, Stuhler K, et al. (2009) Identification and functional characterization of microRNAs involved in the malignant progression of gliomas. Brain Pathol 20: 539-550.
    • (2009) Brain Pathol , vol.20 , pp. 539-550
    • Malzkorn, B.1    Wolter, M.2    Liesenberg, F.3    Grzendowski, M.4    Stuhler, K.5
  • 13
    • 77955282214 scopus 로고    scopus 로고
    • miR-195, miR-455-3p and miR-10a(*) are implicated in acquired temozolomide resistance in glioblastoma multiforme cells
    • Ujifuku K, Mitsutake N, Takakura S, Matsuse M, Saenko V, et al. (2010) miR-195, miR-455-3p and miR-10a(*) are implicated in acquired temozolomide resistance in glioblastoma multiforme cells. Cancer Lett 296: 241-248.
    • (2010) Cancer Lett , vol.296 , pp. 241-248
    • Ujifuku, K.1    Mitsutake, N.2    Takakura, S.3    Matsuse, M.4    Saenko, V.5
  • 14
    • 48949116262 scopus 로고    scopus 로고
    • miR-124 and miR-137 inhibit proliferation of glioblastoma multiforme cells and induce differentiation of brain tumor stem cells
    • Silber J, Lim DA, Petritsch C, Persson AI, Maunakea AK, et al. (2008) miR-124 and miR-137 inhibit proliferation of glioblastoma multiforme cells and induce differentiation of brain tumor stem cells. BMC Med 6: 14.
    • (2008) BMC Med , vol.6 , pp. 14
    • Silber, J.1    Lim, D.A.2    Petritsch, C.3    Persson, A.I.4    Maunakea, A.K.5
  • 16
    • 56449126945 scopus 로고    scopus 로고
    • Targeting of the Bmi-1 oncogene/stem cell renewal factor by microRNA-128 inhibits glioma proliferation and self-renewal
    • Godlewski J, Nowicki MO, Bronisz A, Williams S, Otsuki A, et al. (2008) Targeting of the Bmi-1 oncogene/stem cell renewal factor by microRNA-128 inhibits glioma proliferation and self-renewal. Cancer Res 68: 9125-9130.
    • (2008) Cancer Res , vol.68 , pp. 9125-9130
    • Godlewski, J.1    Nowicki, M.O.2    Bronisz, A.3    Williams, S.4    Otsuki, A.5
  • 17
    • 55949114921 scopus 로고    scopus 로고
    • MicroRNA-21 down-regulates the expression of tumor suppressor PDCD4 in human glioblastoma cell T98G
    • Chen Y, Liu W, Chao T, Zhang Y, Yan X, et al. (2008) MicroRNA-21 down-regulates the expression of tumor suppressor PDCD4 in human glioblastoma cell T98G. Cancer Lett 272: 197-205.
    • (2008) Cancer Lett , vol.272 , pp. 197-205
    • Chen, Y.1    Liu, W.2    Chao, T.3    Zhang, Y.4    Yan, X.5
  • 18
    • 66149173789 scopus 로고    scopus 로고
    • The PTEN-regulating microRNA miR-26a is amplified in high-grade glioma and facilitates gliomagenesis in vivo
    • Huse JT, Brennan C, Hambardzumyan D, Wee B, Pena J, et al. (2009) The PTEN-regulating microRNA miR-26a is amplified in high-grade glioma and facilitates gliomagenesis in vivo. Genes Dev 23: 1327-1337.
    • (2009) Genes Dev , vol.23 , pp. 1327-1337
    • Huse, J.T.1    Brennan, C.2    Hambardzumyan, D.3    Wee, B.4    Pena, J.5
  • 19
    • 77951846726 scopus 로고    scopus 로고
    • Identification of a new microRNA expression profile as a potential cancer screening tool
    • Roa W, Brunet B, Guo L, Amanie J, Fairchild A, et al. (2010) Identification of a new microRNA expression profile as a potential cancer screening tool. Clin Invest Med 33: E124.
    • (2010) Clin Invest Med , vol.33
    • Roa, W.1    Brunet, B.2    Guo, L.3    Amanie, J.4    Fairchild, A.5
  • 20
    • 67349247040 scopus 로고    scopus 로고
    • miR-21 and 221 upregulation and miR-181b downregulation in human grade II-IV astrocytic tumors
    • Conti A, Aguennouz M, La Torre D, Tomasello C, Cardali S, et al. (2009) miR-21 and 221 upregulation and miR-181b downregulation in human grade II-IV astrocytic tumors. J Neurooncol 93: 325-332.
    • (2009) J Neurooncol , vol.93 , pp. 325-332
    • Conti, A.1    Aguennouz, M.2    La Torre, D.3    Tomasello, C.4    Cardali, S.5
  • 21
    • 57049139234 scopus 로고    scopus 로고
    • Up-regulation of micro-RNA-221 (miRNA-221; chr Xp11.3) and caspase-3 accompanies down-regulation of the survivin-1 homolog BIRC1 (NAIP) in glioblastoma multiforme (GBM)
    • Lukiw WJ, Cui JG, Li YY, Culicchia F, (2009) Up-regulation of micro-RNA-221 (miRNA-221; chr Xp11.3) and caspase-3 accompanies down-regulation of the survivin-1 homolog BIRC1 (NAIP) in glioblastoma multiforme (GBM). J Neurooncol 91: 27-32.
    • (2009) J Neurooncol , vol.91 , pp. 27-32
    • Lukiw, W.J.1    Cui, J.G.2    Li, Y.Y.3    Culicchia, F.4
  • 22
    • 84857230258 scopus 로고    scopus 로고
    • miR-221/222 overexpession in human glioblastoma increases invasiveness by targeting the protein phosphate PTPmu
    • Quintavalle C, Garofalo M, Zanca C, Romano G, Iaboni M, et al. (2011) miR-221/222 overexpession in human glioblastoma increases invasiveness by targeting the protein phosphate PTPmu. Oncogene.
    • (2011) Oncogene
    • Quintavalle, C.1    Garofalo, M.2    Zanca, C.3    Romano, G.4    Iaboni, M.5
  • 23
    • 80052420492 scopus 로고    scopus 로고
    • Reduced expression of brain-enriched microRNAs in glioblastomas permits targeted regulation of a cell death gene
    • Skalsky RL, Cullen BR, (2011) Reduced expression of brain-enriched microRNAs in glioblastomas permits targeted regulation of a cell death gene. PLoS One 6: e24248.
    • (2011) PLoS One , vol.6
    • Skalsky, R.L.1    Cullen, B.R.2
  • 24
    • 65549120766 scopus 로고    scopus 로고
    • Regulation of epidermal growth factor receptor signaling in human cancer cells by microRNA-7
    • Webster RJ, Giles KM, Price KJ, Zhang PM, Mattick JS, et al. (2009) Regulation of epidermal growth factor receptor signaling in human cancer cells by microRNA-7. J Biol Chem 284: 5731-5741.
    • (2009) J Biol Chem , vol.284 , pp. 5731-5741
    • Webster, R.J.1    Giles, K.M.2    Price, K.J.3    Zhang, P.M.4    Mattick, J.S.5
  • 25
    • 45549089973 scopus 로고    scopus 로고
    • microRNA-7 inhibits the epidermal growth factor receptor and the Akt pathway and is down-regulated in glioblastoma
    • Kefas B, Godlewski J, Comeau L, Li Y, Abounader R, et al. (2008) microRNA-7 inhibits the epidermal growth factor receptor and the Akt pathway and is down-regulated in glioblastoma. Cancer Res 68: 3566-3572.
    • (2008) Cancer Res , vol.68 , pp. 3566-3572
    • Kefas, B.1    Godlewski, J.2    Comeau, L.3    Li, Y.4    Abounader, R.5
  • 26
    • 80052826641 scopus 로고    scopus 로고
    • MicroRNA-34a targets notch1 and inhibits cell proliferation in glioblastoma multiforme
    • Li WB, Ma MW, Dong LJ, Wang F, Chen LX, et al. (2011) MicroRNA-34a targets notch1 and inhibits cell proliferation in glioblastoma multiforme. Cancer Biol Ther 12: 477-483.
    • (2011) Cancer Biol Ther , vol.12 , pp. 477-483
    • Li, W.B.1    Ma, M.W.2    Dong, L.J.3    Wang, F.4    Chen, L.X.5
  • 27
    • 70350221952 scopus 로고    scopus 로고
    • MicroRNA-34a inhibits glioblastoma growth by targeting multiple oncogenes
    • Li Y, Guessous F, Zhang Y, Dipierro C, Kefas B, et al. (2009) MicroRNA-34a inhibits glioblastoma growth by targeting multiple oncogenes. Cancer Res 69: 7569-7576.
    • (2009) Cancer Res , vol.69 , pp. 7569-7576
    • Li, Y.1    Guessous, F.2    Zhang, Y.3    Dipierro, C.4    Kefas, B.5
  • 28
    • 79957568143 scopus 로고    scopus 로고
    • miR-101 is down-regulated in glioblastoma resulting in EZH2-induced proliferation, migration, and angiogenesis
    • Smits M, Nilsson J, Mir SE, van der Stoop PM, Hulleman E, et al. (2010) miR-101 is down-regulated in glioblastoma resulting in EZH2-induced proliferation, migration, and angiogenesis. Oncotarget 1: 710-720.
    • (2010) Oncotarget , vol.1 , pp. 710-720
    • Smits, M.1    Nilsson, J.2    Mir, S.E.3    van der Stoop, P.M.4    Hulleman, E.5
  • 29
    • 34748837455 scopus 로고    scopus 로고
    • Systematic analysis of microRNA expression of RNA extracted from fresh frozen and formalin-fixed paraffin-embedded samples
    • Xi Y, Nakajima G, Gavin E, Morris CG, Kudo K, et al. (2007) Systematic analysis of microRNA expression of RNA extracted from fresh frozen and formalin-fixed paraffin-embedded samples. RNA 13: 1668-1674.
    • (2007) RNA , vol.13 , pp. 1668-1674
    • Xi, Y.1    Nakajima, G.2    Gavin, E.3    Morris, C.G.4    Kudo, K.5
  • 30
    • 77955482956 scopus 로고    scopus 로고
    • MicroRNA profiling of clear cell renal cell carcinoma by whole-genome small RNA deep sequencing of paired frozen and formalin-fixed, paraffin-embedded tissue specimens
    • Weng L, Wu X, Gao H, Mu B, Li X, et al. (2010) MicroRNA profiling of clear cell renal cell carcinoma by whole-genome small RNA deep sequencing of paired frozen and formalin-fixed, paraffin-embedded tissue specimens. J Pathol 222: 41-51.
    • (2010) J Pathol , vol.222 , pp. 41-51
    • Weng, L.1    Wu, X.2    Gao, H.3    Mu, B.4    Li, X.5
  • 31
    • 34447506198 scopus 로고    scopus 로고
    • Comparison of miRNA expression patterns using total RNA extracted from matched samples of formalin-fixed paraffin-embedded (FFPE) cells and snap frozen cells
    • Li J, Smyth P, Flavin R, Cahill S, Denning K, et al. (2007) Comparison of miRNA expression patterns using total RNA extracted from matched samples of formalin-fixed paraffin-embedded (FFPE) cells and snap frozen cells. BMC Biotechnol 7: 36.
    • (2007) BMC Biotechnol , vol.7 , pp. 36
    • Li, J.1    Smyth, P.2    Flavin, R.3    Cahill, S.4    Denning, K.5
  • 32
    • 74749090223 scopus 로고    scopus 로고
    • mRNA and micro-RNA expression analysis in laser-capture microdissected prostate biopsies: valuable tool for risk assessment and prevention trials
    • Nonn L, Vaishnav A, Gallagher L, Gann PH, (2010) mRNA and micro-RNA expression analysis in laser-capture microdissected prostate biopsies: valuable tool for risk assessment and prevention trials. Exp Mol Pathol 88: 45-51.
    • (2010) Exp Mol Pathol , vol.88 , pp. 45-51
    • Nonn, L.1    Vaishnav, A.2    Gallagher, L.3    Gann, P.H.4
  • 33
    • 80052948974 scopus 로고    scopus 로고
    • miRNA analysis of prostate cancer by quantitative real time PCR: comparison between formalin-fixed paraffin embedded and fresh-frozen tissue
    • Leite KR, Canavez JM, Reis ST, Tomiyama AH, Piantino CB, et al. (2011) miRNA analysis of prostate cancer by quantitative real time PCR: comparison between formalin-fixed paraffin embedded and fresh-frozen tissue. Urol Oncol 29: 533-537.
    • (2011) Urol Oncol , vol.29 , pp. 533-537
    • Leite, K.R.1    Canavez, J.M.2    Reis, S.T.3    Tomiyama, A.H.4    Piantino, C.B.5
  • 34
    • 33845876339 scopus 로고    scopus 로고
    • Direct and sensitive miRNA profiling from low-input total RNA
    • Wang H, Ach RA, Curry B, (2007) Direct and sensitive miRNA profiling from low-input total RNA. RNA 13: 151-159.
    • (2007) RNA , vol.13 , pp. 151-159
    • Wang, H.1    Ach, R.A.2    Curry, B.3
  • 35
    • 58049157656 scopus 로고    scopus 로고
    • Reliable microRNA profiling in routinely processed formalin-fixed paraffin-embedded breast cancer specimens using fluorescence labelled bead technology
    • Hasemeier B, Christgen M, Kreipe H, Lehmann U, (2008) Reliable microRNA profiling in routinely processed formalin-fixed paraffin-embedded breast cancer specimens using fluorescence labelled bead technology. BMC Biotechnol 8: 90.
    • (2008) BMC Biotechnol , vol.8 , pp. 90
    • Hasemeier, B.1    Christgen, M.2    Kreipe, H.3    Lehmann, U.4
  • 36
    • 65649087527 scopus 로고    scopus 로고
    • Robust global micro-RNA profiling with formalin-fixed paraffin-embedded breast cancer tissues
    • Hui AB, Shi W, Boutros PC, Miller N, Pintilie M, et al. (2009) Robust global micro-RNA profiling with formalin-fixed paraffin-embedded breast cancer tissues. Lab Invest 89: 597-606.
    • (2009) Lab Invest , vol.89 , pp. 597-606
    • Hui, A.B.1    Shi, W.2    Boutros, P.C.3    Miller, N.4    Pintilie, M.5
  • 38
    • 58349108273 scopus 로고    scopus 로고
    • Tissues from routine pathology archives are suitable for microRNA analyses by quantitative PCR
    • Siebolts U, Varnholt H, Drebber U, Dienes HP, Wickenhauser C, et al. (2009) Tissues from routine pathology archives are suitable for microRNA analyses by quantitative PCR. J Clin Pathol 62: 84-88.
    • (2009) J Clin Pathol , vol.62 , pp. 84-88
    • Siebolts, U.1    Varnholt, H.2    Drebber, U.3    Dienes, H.P.4    Wickenhauser, C.5
  • 39
    • 34748915345 scopus 로고    scopus 로고
    • MicroRNA expression in lymphoma
    • Lawrie CH, (2007) MicroRNA expression in lymphoma. Expert Opin Biol Ther 7: 1363-1374.
    • (2007) Expert Opin Biol Ther , vol.7 , pp. 1363-1374
    • Lawrie, C.H.1
  • 40
    • 55949095602 scopus 로고    scopus 로고
    • An array-based analysis of microRNA expression comparing matched frozen and formalin-fixed paraffin-embedded human tissue samples
    • Zhang X, Chen J, Radcliffe T, Lebrun DP, Tron VA, et al. (2008) An array-based analysis of microRNA expression comparing matched frozen and formalin-fixed paraffin-embedded human tissue samples. J Mol Diagn 10: 513-519.
    • (2008) J Mol Diagn , vol.10 , pp. 513-519
    • Zhang, X.1    Chen, J.2    Radcliffe, T.3    Lebrun, D.P.4    Tron, V.A.5
  • 41
    • 65049084535 scopus 로고    scopus 로고
    • MicroRNA expression in melanocytic nevi: the usefulness of formalin-fixed, paraffin-embedded material for miRNA microarray profiling
    • Glud M, Klausen M, Gniadecki R, Rossing M, Hastrup N, et al. (2009) MicroRNA expression in melanocytic nevi: the usefulness of formalin-fixed, paraffin-embedded material for miRNA microarray profiling. J Invest Dermatol 129: 1219-1224.
    • (2009) J Invest Dermatol , vol.129 , pp. 1219-1224
    • Glud, M.1    Klausen, M.2    Gniadecki, R.3    Rossing, M.4    Hastrup, N.5
  • 43
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • Livak KJ, Schmittgen TD, (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25: 402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2


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