Optimal estimation of ion-channel kinetics from macroscopic currents

PLoS ONE

Volumn 7, Issue 4, 2012, Pages

  Wang, Wei ^a   Xiao, Feng ^a   Zeng, Xuhui ^b   Yao, Jing ^a   Yuchi, Ming ^a   Ding, Jiuping ^a  

^a HUAZHONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^b NANCHANG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM CHANNEL; CALCIUM ION; LARGE CONDUCTANCE CALCIUM ACTIVATED POTASSIUM CHANNEL; VOLTAGE GATED POTASSIUM CHANNEL;

ALGORITHM; ANIMAL CELL; ARTICLE; CALCIUM CONDUCTANCE; CALCIUM CURRENT; COMPUTER ANALYSIS; COMPUTER SIMULATION; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DATA ANALYSIS; ION CONDUCTANCE; ION CURRENT; NONHUMAN; OOCYTE; PARTICLE SWARM OPTIMIZATION GOLDEN SECTION SEARCH ALGORITHM; POTASSIUM CONDUCTANCE; POTASSIUM CURRENT; PROBABILITY; TRANSPORT KINETICS; XENOPUS; ALLOSTERISM; ANIMAL; CELL MEMBRANE POTENTIAL; CHEMICAL STRUCTURE; CHEMISTRY; KINETICS; METABOLISM; PATCH CLAMP; PHYSIOLOGY;

ALGORITHMS; ALLOSTERIC REGULATION; ANIMALS; COMPUTER SIMULATION; KINETICS; LARGE-CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNELS; MARKOV CHAINS; MEMBRANE POTENTIALS; MODELS, MOLECULAR; OOCYTES; PATCH-CLAMP TECHNIQUES; XENOPUS;

EID: 84859968485     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0035208     Document Type: Article

References (23)

1. Hodgkin AL, Huxley AF, (1952) A quantitative description of membrane current and its application to conduction and excitation in nerve. J Physiol (Lond) 117: 500-544.
2. Sun L, Xiong Y, Zeng X, Wu Y, Pan N, et al. (2009) Differential Regulation of Action Potentials by Inactivating and Noninactivating BK Channels in Rat Adrenal Chromaffin Cells. Biophys J 97: 1832-1842.
3. Gurkiewicz M, Korngreen A, (2007) A Numerical Approach to Ion Channel Modelling Using Whole-Cell Voltage-Clamp Recordings and a Genetic Algorithm. PLoS Comput Biol 3 (8): e169.
4. Qin F, Auerbach A, Sachs F, (1996) Estimating single channel kinetic parameters from idealized patch-clamp data containing missed events. Biophys J 70: 264-280.
5. Qin F, Auerbach A, Sachs F, (2000) A direct optimization approach to hidden Markov modeling for signal channel kinetics. Biophys J 79: 1915-1927.
6. Milescu LS, Akk G, Sachs F, (2005) Maximum likelihood estimation of ion channel kinetics from macroscopic currents. Biophys J 88: 2494-2515.
7. Horrigan FT, Cui J, Aldrich RW, (1999) Allosteric Voltage Gating of Potassium Channels I. J Gen Physiol 114: 277-304.
8. Cox DH, Cui J, Aldrich RW, (1997) Allosteric Gating of a Large Conductance Ca-activated K+ Channel. J Gen Physiol 110: 257-281.
9. Colquhoun D, Dowsland KA, Beato M, Plested AJR, (2004) How to impose microscopic reversibility in complex reaction mechanisms. Biophys J 86: 3510-3518.
10. Wang L, Siegel HJ, Roychowdhury V, Maciejewski AA, (1997) Task Matching and Scheduling in Heterogeneous Computing Environments Using a Genetic-Algorithm-Based Approach. J Parallel and Distributed Computing 47 (1): 8-22.
11. Lo CC, Chang WH, (2000) A Multiobjective Hybrid Genetic Algorithm for the Capacitated Multipoint Network Design Problem. IEEE trans on System, Man and Cybernetics-Part B: Cybernetics 30: 461-470.
12. Zhou XX, Liang J, (1999) Nonlinear Adaptive Control of TCSC to Improve the Performance of Power Systems. IEE Proc Generation, Transmission and Distribution 146 (3): 301-305.
13. Cui X, Lin C, (2004) A Multiobjective Genetic Algorithm for Distributed Database Management. IEEE World Conference on Intelligence Control and Automation 3: 2117-2121.
14. Miller JF, Job D, Vassilev VK, (2000) Principles in the Evolutionary Design of Digital Circuits-Part 1. J Genetic Programming and Evolvable Machines 1: 8-35.
15. Coello CAC, (2000) Use of Evolutionary Techniques to Automate the Design of Combinational Circuits. International Journal of Smart Engineering System Design 2: 299-314.
16. Kewley RH, Embrechts MJ, (2002) Computational Millitary Tactical Planning System. IEEE trans on System, Man and Cybernetic 32: 161-171.
17. Kennedy J, Eberhart RC, (1995) Particle swarm optimization. Proceedings of the IEEE International Conference on Neural Networks IV pp. 1942-1948.
18. Zhao X, (2010) A perturbed particle swarm algorithm for numerical optimization. Applied Soft Computing 10: 119-124.
19. Shi Y, Eberhart RC, (1998) A modified particle swarm optimizer. Proceedings of the IEEE International Conference on Evolutionary Computation pp. 69-73.
20. Lovbjerg M, Rasmussen TK, Krink T, (2001) Hybrid particle swarm optimizer with breeding and subpopulations. Proceedings of the Genetic and Evolutionary Computation Conference (GECCO), San Francisco, CA, July 2001.
21. Kiefer J, (1953) Sequential minimax search for a maximum. Proceedings of the American Mathematical Society 4 (3): 502-506.
22. Sakmann B, Neher E, (1995) Single-Channel Recording(second edition). pp. 589-633 Plenum Press, New York.
23. Xia XM, Ding JP, Zeng XH, Duan KL, Lingle CJ, (2000) Rectification and Rapid Activation at Low Ca2+ of Ca2+-Activated, Voltage-Dependent BK Currents: Consequences of Rapid Inactivation by a Novel β Subunit. J Neurosci 20 (13): 4890-4903.