-
1
-
-
35548990581
-
A critical three-way junction is conserved in budding yeast and vertebrate telomerase RNAs
-
DOI 10.1093/nar/gkm713
-
Brown Y, Abraham M, Pearl S, Kabaha MM, Elboher E, Tzfati Y. 2007. A critical three-way junction is conserved in budding yeast and vertebrate telomerase RNAs. Nucleic Acids Res 35: 6280-6289. (Pubitemid 350018589)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.18
, pp. 6280-6289
-
-
Brown, Y.1
Abraham, M.2
Pearl, S.3
Kabaha, M.M.4
Elboher, E.5
Tzfati, Y.6
-
2
-
-
3342875215
-
Structural elements required for association of the Saccharomyces cerevisiae telomerase RNA with the Est2 reverse transcriptase
-
DOI 10.1128/MCB.24.17.7720-7736.2004
-
Chappell AS, Lundblad V. 2004. Structural elements required for association of the Saccharomyces cerevisiae telomerase RNA with the Est2 reverse transcriptase. Mol Cell Biol 24: 7720-7736. (Pubitemid 39121496)
-
(2004)
Molecular and Cellular Biology
, vol.24
, Issue.17
, pp. 7720-7736
-
-
Chappell, A.S.1
Lundblad, V.2
-
3
-
-
0037439107
-
Determinants in mammalian telomerase RNA that mediate enzyme processivity and cross-species incompatibility
-
DOI 10.1093/emboj/cdg024
-
Chen J-L, Greider CW. 2003. Determinants in mammalian telomerase RNA that mediate enzyme processivity and cross-species incompatibility. EMBO J 22: 304-314. (Pubitemid 36119436)
-
(2003)
EMBO Journal
, vol.22
, Issue.2
, pp. 304-314
-
-
Chen, J.-L.1
Greider, C.W.2
-
5
-
-
0034598919
-
Secondary structure of vertebrate telomerase RNA
-
Chen J-L, Blasco MA, Greider CW. 2000. Secondary structure of vertebrate telomerase RNA. Cell 100: 503-514.
-
(2000)
Cell
, vol.100
, pp. 503-514
-
-
Chen, J.-L.1
Blasco, M.A.2
Greider, C.W.3
-
6
-
-
33745862398
-
The biogenesis and regulation of telomerase holoenzymes
-
DOI 10.1038/nrm1961, PII NRM1961
-
Collins K. 2006. The biogenesis and regulation of telomerase holoenzymes. Nat Rev Mol Cell Biol 7: 484-494. (Pubitemid 44036454)
-
(2006)
Nature Reviews Molecular Cell Biology
, vol.7
, Issue.7
, pp. 484-494
-
-
Collins, K.1
-
7
-
-
0023237008
-
2 relaxation process
-
Connor S, Everett J, Nicholson JK. 1987. Spin-echo proton NMR spectroscopy of urine samples. Water suppression via a urea-dependent T2 relaxation process. Magn Reson Med 4: 461-470. (Pubitemid 17108571)
-
(1987)
Magnetic Resonance in Medicine
, vol.4
, Issue.5
, pp. 461-470
-
-
Connor, S.1
Everett, J.2
Nicholson, J.K.3
-
8
-
-
3142532677
-
A phylogenetically based secondary structure for the yeast telomerase RNA
-
DOI 10.1016/j.cub.2004.05.054, PII S0960982204003884
-
Dandjinou AT, Lévesque N, Larose S, Lucier J-F, Elela SA, Wellinger RJ. 2004. A phylogenetically based secondary structure for the yeast telomerase RNA. Curr Biol 14: 1148-1158. (Pubitemid 38893977)
-
(2004)
Current Biology
, vol.14
, Issue.13
, pp. 1148-1158
-
-
Dandjinou, A.T.1
Levesque, N.2
Larose, S.3
Lucier, J.-F.4
Elela, S.A.5
Wellinger, R.J.6
-
9
-
-
57049130454
-
The RNA WikiProject: Community annotation of RNA families
-
Daub J, Gardner PP, Tate J, Ramsköld D, Manske M, Scott WG, Weinberg Z, Griffiths-Jones S, Bateman A. 2008. The RNA WikiProject: Community annotation of RNA families. RNA 14: 2462-2464.
-
(2008)
RNA
, vol.14
, pp. 2462-2464
-
-
Daub, J.1
Gardner, P.P.2
Tate, J.3
Ramsköld, D.4
Manske, M.5
Scott, W.G.6
Weinberg, Z.7
Griffiths-Jones, S.8
Bateman, A.9
-
10
-
-
0029882170
-
Structure of the autoregulatory pseudoknot within the gene 32 messenger RNA of bacteriophages T2 and T6: A model for a possible family of structurally related RNA pseudoknots
-
DOI 10.1021/bi9527350
-
Du Z, Giedroc DP, Hoffman DW. 1996. Structure of the auto-regulatory pseudoknot within the gene 32 messenger RNA of bacteriophages T2 and T6: A model for a possible family of structurally related RNA pseudoknots. Biochemistry 35: 4187-4198. (Pubitemid 26113477)
-
(1996)
Biochemistry
, vol.35
, Issue.13
, pp. 4187-4198
-
-
Du, Z.1
Giedroc, D.P.2
Hoffman, D.W.3
-
11
-
-
0007996527
-
A new spectroscopic approach to the determination of helical secondary structure in ribonucleic acids
-
Fresco J, Klotz L, Richards E. 1963. A new spectroscopic approach to the determination of helical secondary structure in ribonucleic acids. Cold Spring Harb Symp Quant Biol 28: 83-90.
-
(1963)
Cold Spring Harb Symp Quant Biol
, vol.28
, pp. 83-90
-
-
Fresco, J.1
Klotz, L.2
Richards, E.3
-
12
-
-
58149191274
-
Rfam: Updates to the RNA families database
-
Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR, et al. 2009. Rfam: Updates to the RNA families database. Nucleic Acids Res 37: D136-D140.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Gardner, P.P.1
Daub, J.2
Tate, J.G.3
Nawrocki, E.P.4
Kolbe, D.L.5
Lindgreen, S.6
Wilkinson, A.C.7
Finn, R.D.8
Griffiths-Jones, S.9
Eddy, S.R.10
-
13
-
-
78651323093
-
Rfam: Wikipedia, clans, and the "decimal" release
-
Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR, et al. 2011. Rfam: Wikipedia, clans, and the "decimal" release. Nucleic Acids Res 39: D141-D145.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Gardner, P.P.1
Daub, J.2
Tate, J.3
Moore, B.L.4
Osuch, I.H.5
Griffiths-Jones, S.6
Finn, R.D.7
Nawrocki, E.P.8
Kolbe, D.L.9
Eddy, S.R.10
-
15
-
-
0035825601
-
Expression of mutant telomerase in immortal telomerase-negative human cells results in cell cycle deregulation, nuclear and chromosomal abnormalities and rapid loss of viability
-
DOI 10.1038/sj.onc.1204145
-
Guiducci C, Cerone M, Bacchetti S. 2001. Expression of mutant telomerase in immortal telomerase-negative human cells results in cell cycle deregulation, nuclear and chromosomal abnormalities, and rapid loss of viability. Oncogene 20: 714-725. (Pubitemid 32179340)
-
(2001)
Oncogene
, vol.20
, Issue.6
, pp. 714-725
-
-
Guiducci, C.1
Cerone, M.A.2
Bacchetti, S.3
-
16
-
-
0032948718
-
An approximation of loop free energy values of rna h-pseudoknots
-
DOI 10.1017/S135583829998189X
-
Gultyaev AP, van Batenburg FH, Pleij CW. 1999. An approximation of loop free energy values of RNA H-pseudoknots. RNA 5: 609-617. (Pubitemid 29218450)
-
(1999)
RNA
, vol.5
, Issue.5
, pp. 609-617
-
-
Gultyaev, A.P.1
Van Batenburg, F.H.D.2
Pleij, C.W.A.3
-
17
-
-
62549108676
-
Identification and comparative analysis of telomerase RNAs from Candida species reveal conservation of functional elements
-
Gunisova S, Elboher E, Nosek J, Gorkovoy V, Brown Y, Lucier J-F, Laterreur N, Wellinger RJ, Tzfati Y, Tomaska L. 2009. Identification and comparative analysis of telomerase RNAs from Candida species reveal conservation of functional elements. RNA 15: 546-559.
-
(2009)
RNA
, vol.15
, pp. 546-559
-
-
Gunisova, S.1
Elboher, E.2
Nosek, J.3
Gorkovoy, V.4
Brown, Y.5
Lucier, J.-F.6
Laterreur, N.7
Wellinger, R.J.8
Tzfati, Y.9
Tomaska, L.10
-
18
-
-
0038701907
-
Biochemical aspects of telomerase function
-
DOI 10.1016/S0304-3835(02)00701-2
-
Harrington L. 2003. Biochemical aspects of telomerase function. Cancer Lett 194: 139-154. (Pubitemid 36577325)
-
(2003)
Cancer Letters
, vol.194
, Issue.2
, pp. 139-154
-
-
Harrington, L.1
-
19
-
-
77956682931
-
Targeted 2′-O methylation at a nucleotide within the pseudoknot of telomerase RNA reduces telomerase activity in vivo
-
Huang C, Yu Y-T. 2010. Targeted 2′-O methylation at a nucleotide within the pseudoknot of telomerase RNA reduces telomerase activity in vivo. Mol Cell Biol 30: 4368-4378.
-
(2010)
Mol Cell Biol
, vol.30
, pp. 4368-4378
-
-
Huang, C.1
Yu, Y.-T.2
-
20
-
-
72049104792
-
Large telomerase RNA, telomere length heterogeneity, and escape from senescence in Candida glabrata
-
Kachouri-Lafond R, Dujon B, Gilson E, Westhof E, Fairhead C, Teixeira MT. 2009. Large telomerase RNA, telomere length heterogeneity, and escape from senescence in Candida glabrata. FEBS Lett 583: 3605-3610.
-
(2009)
FEBS Lett
, vol.583
, pp. 3605-3610
-
-
Kachouri-Lafond, R.1
Dujon, B.2
Gilson, E.3
Westhof, E.4
Fairhead, C.5
Teixeira, M.T.6
-
21
-
-
0036850323
-
Telomerase: Biochemical considerations for enzyme and substrate
-
DOI 10.1016/S0968-0004(02)02206-5, PII S0968000402022065
-
Kelleher C, Teixeira MT, Forstemann K, Lingner J. 2002. Telomerase: Biochemical considerations for enzyme and substrate. Trends Biochem Sci 27: 572-579. (Pubitemid 35335406)
-
(2002)
Trends in Biochemical Sciences
, vol.27
, Issue.11
, pp. 572-579
-
-
Kelleher, C.1
Teixeira, M.T.2
Forstemann, K.3
Lingner, J.4
-
22
-
-
56949105325
-
Solution structure and dynamics of the wild-type pseudoknot of human telomerase RNA
-
Kim N-K, Zhang Q, Zhou J, Theimer CA, Peterson RD, Feigon J. 2008. Solution structure and dynamics of the wild-type pseudoknot of human telomerase RNA. J Mol Biol 384: 1249-1261.
-
(2008)
J Mol Biol
, vol.384
, pp. 1249-1261
-
-
Kim, N.-K.1
Zhang, Q.2
Zhou, J.3
Theimer, C.A.4
Peterson, R.D.5
Feigon, J.6
-
23
-
-
0031047642
-
Block in anaphase chromosome separation caused by a telomerase template mutation
-
DOI 10.1126/science.275.5305.1478
-
Kirk KE, Harmon BP, Reichardt IK, Sedat JW, Blackburn EH. 1997. Block in anaphase chromosome separation caused by a telomerase template mutation. Science 275: 1478-1481. (Pubitemid 27111296)
-
(1997)
Science
, vol.275
, Issue.5305
, pp. 1478-1481
-
-
Kirk, K.E.1
Harmon, B.P.2
Reichardt, I.K.3
Sedat, J.W.4
Blackburn, E.H.5
-
24
-
-
0038433298
-
Roles for RNA in telomerase nucleotide and repeat addition processivity
-
DOI 10.1016/S1097-2765(03)00232-6
-
Lai CK, Miller MC, Collins K. 2003. Roles for RNA in telomerase nucleotide and repeat addition processivity. Mol Cell 11: 1673-1683. (Pubitemid 36776551)
-
(2003)
Molecular Cell
, vol.11
, Issue.6
, pp. 1673-1683
-
-
Lai, C.K.1
Miller, M.C.2
Collins, K.3
-
25
-
-
6944242754
-
A universal telomerase RNA core structure includes structured motifs required for binding the telomerase reverse transcriptase protein
-
DOI 10.1073/pnas.0405879101
-
Lin J, Ly H, Hussain A, Abraham M, Pearl S, Tzfati Y, Parslow TG, Blackburn EH. 2004. A universal telomerase RNA core structure includes structured motifs required for binding the telomerase reverse transcriptase protein. Proc Natl Acad Sci 101: 14713-14718. (Pubitemid 39410740)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.41
, pp. 14713-14718
-
-
Lin, J.1
Ly, H.2
Hussain, A.3
Abraham, M.4
Pearl, S.5
Tzfati, Y.6
Parslow, T.G.7
Blackburn, E.H.8
-
26
-
-
0028106199
-
Telomerase RNAs of different ciliates have a common secondary structure and a permuted template
-
Lingner J, Hendrick LL, Cech TR. 1994. Telomerase RNAs of different ciliates have a common secondary structure and a permuted template. Genes Dev 8: 1984-1998. (Pubitemid 24273897)
-
(1994)
Genes and Development
, vol.8
, Issue.16
, pp. 1984-1998
-
-
Lingner, J.1
Hendrick, L.L.2
Cech, T.R.3
-
27
-
-
0041631045
-
Stem-loop IV of Tetrahymena telomerase RNA stimulates processivity in trans
-
DOI 10.1128/MCB.23.16.5606-5613.2003
-
Mason DX, Goneska E, Greider CW. 2003. Stem-loop IV of Tetrahymena telomerase RNA stimulates processivity in trans. Mol Cell Biol 23: 5606-5613. (Pubitemid 36951326)
-
(2003)
Molecular and Cellular Biology
, vol.23
, Issue.16
, pp. 5606-5613
-
-
Mason, D.X.1
Goneska, E.2
Greider, C.W.3
-
28
-
-
0029102354
-
Runaway telomere elongation caused by telomerase RNA gene mutations
-
McEachern MJ, Blackburn EH. 1995. Runaway telomere elongation caused by telomerase RNA gene mutations. Nature 376: 403-409.
-
(1995)
Nature
, vol.376
, pp. 403-409
-
-
McEachern, M.J.1
Blackburn, E.H.2
-
30
-
-
44849094904
-
Triple-helix structure in telomerase RNA contributes to catalysis
-
DOI 10.1038/nsmb.1420, PII NSMB1420
-
Qiao F, Cech TR. 2008. Triple-helix structure in telomerase RNA contributes to catalysis. Nat Struct Mol Biol 15: 634-640. (Pubitemid 351799131)
-
(2008)
Nature Structural and Molecular Biology
, vol.15
, Issue.6
, pp. 634-640
-
-
Qiao, F.1
Cech, T.R.2
-
31
-
-
0029975140
-
Thermodynamics of folding of the RNA pseudoknot of the T4 gene 32 autoregulatory messenger RNA
-
DOI 10.1021/bi9527348
-
Qiu H, Kaluarachchi K, Du Z, Hoffman DW, Giedroc DP. 1996. Thermodynamics of folding of the RNA pseudoknot of the T4 gene 32 autoregulatory messenger RNA. Biochemistry 35: 4176-4186. (Pubitemid 26113476)
-
(1996)
Biochemistry
, vol.35
, Issue.13
, pp. 4176-4186
-
-
Qiu, H.1
Kaluarachchi, K.2
Du, Z.3
Hoffman, D.W.4
Giedroc, D.P.5
-
32
-
-
0025944831
-
A conserved secondary structure for telomerase RNA
-
DOI 10.1016/0092-8674(91)90186-3
-
Romero DP, Blackburn EH. 1991. A conserved secondary structure for telomerase RNA. Cell 67: 343-353. (Pubitemid 121001450)
-
(1991)
Cell
, vol.67
, Issue.2
, pp. 343-353
-
-
Romero, D.P.1
Blackburn, E.H.2
-
33
-
-
33947277419
-
A triple helix within a pseudoknot is a conserved and essential element of telomerase RNA
-
DOI 10.1128/MCB.01826-06
-
Shefer K, Brown Y, Gorkovoy V, Nussbaum T, Ulyanov NB, Tzfati Y. 2007. A triple helix within a pseudoknot is a conserved and essential element of telomerase RNA. Mol Cell Biol 27: 2130-2143. (Pubitemid 46418470)
-
(2007)
Molecular and Cellular Biology
, vol.27
, Issue.6
, pp. 2130-2143
-
-
Shefer, K.1
Brown, Y.2
Gorkovoy, V.3
Nussbaum, T.4
Ulyanov, N.B.5
Tzfati, Y.6
-
34
-
-
0027944347
-
TLC1: Template RNA component of Saccharomyces cerevisiae telomerase
-
Singer MS, Gottschling DE. 1994. TLC1: Template RNA component of Saccharomyces cerevisiae telomerase. Science 266: 404-409. (Pubitemid 24348957)
-
(1994)
Science
, vol.266
, Issue.5184
, pp. 404-409
-
-
Singer, M.S.1
Gottschling, D.E.2
-
35
-
-
0032511143
-
Non-nearest neighbor effects on the thermodynamics of unfolding of a model mRNA pseudoknot
-
DOI 10.1006/jmbi.1998.1812
-
Theimer CA, Wang Y, Hoffman DW, Krisch HM, Giedroc DP. 1998. Non-nearest neighbor effects on the thermodynamics of unfolding of a model mRNA pseudoknot. J Mol Biol 279: 545-564. (Pubitemid 28279464)
-
(1998)
Journal of Molecular Biology
, vol.279
, Issue.3
, pp. 545-564
-
-
Theimer, C.A.1
Wang, Y.2
Hoffman, D.W.3
Krisch, H.M.4
Giedroc, D.P.5
-
36
-
-
0037457985
-
Mutations linked to dyskeratosis congenita cause changes in the structural equilibrium in telomerase RNA
-
DOI 10.1073/pnas.242720799
-
Theimer CA, Finger LD, Trantirek L, Feigon J. 2003. Mutations linked to dyskeratosis congenita cause changes in the structural equilibrium in telomerase RNA. Proc Natl Acad Sci 100: 449-454. (Pubitemid 36126072)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.2
, pp. 449-454
-
-
Theimer, C.A.1
Finger, L.D.2
Trantirek, L.3
Feigon, J.4
-
37
-
-
14644435818
-
Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function
-
DOI 10.1016/j.molcel.2005.01.017
-
Theimer CA, Blois CA, Feigon J. 2005. Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function. Mol Cell 17: 671-682. (Pubitemid 40320917)
-
(2005)
Molecular Cell
, vol.17
, Issue.5
, pp. 671-682
-
-
Theimer, C.A.1
Blois, C.A.2
Feigon, J.3
-
38
-
-
75549088409
-
NNDB: The nearest neighbor parameter database for predicting stability of nucleic acid secondary structure
-
Turner DH, Mathews DH. 2010. NNDB: The nearest neighbor parameter database for predicting stability of nucleic acid secondary structure. Nucleic Acids Res 38: D280-D282.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Turner, D.H.1
Mathews, D.H.2
-
40
-
-
0034608073
-
Template boundary in a yeast telomerase specified by RNA structure
-
DOI 10.1126/science.288.5467.863
-
Tzfati Y, Fulton TB, Roy J, Blackburn EH. 2000. Template boundary in a yeast telomerase specified by RNA structure. Science 288: 863-867. (Pubitemid 30257736)
-
(2000)
Science
, vol.288
, Issue.5467
, pp. 863-867
-
-
Tzfati, Y.1
Fulton, T.B.2
Roy, J.3
Blackburn, E.H.4
-
41
-
-
35548966204
-
Pseudoknot structures with conserved base triples in telomerase RNAs of ciliates
-
DOI 10.1093/nar/gkm660
-
Ulyanov NB, Shefer K, James TL, Tzfati Y. 2007. Pseudoknot structures with conserved base triples in telomerase RNAs of ciliates. Nucleic Acids Res 35: 6150-6160. (Pubitemid 350018577)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.18
, pp. 6150-6160
-
-
Ulyanov, N.B.1
Shefer, K.2
James, T.L.3
Tzfati, Y.4
-
42
-
-
37849049354
-
Identification and characterization of the Schizosaccharomyces pombe TER1 telomerase RNA
-
Webb CJ, Zakian VA. 2008. Identification and characterization of the Schizosaccharomyces pombe TER1 telomerase RNA. Nat Struct Mol Biol 15: 34-42.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 34-42
-
-
Webb, C.J.1
Zakian, V.A.2
-
43
-
-
23144463133
-
Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots
-
DOI 10.1093/nar/gki447
-
Xayaphoummine A, Bucher T, Isambert H. 2005. Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots. Nucleic Acids Res 33: W605-W610. (Pubitemid 44529994)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS.
-
-
Xayaphoummine, A.1
Bucher, T.2
Isambert, H.3
-
45
-
-
28544450412
-
A miniature yeast telomerase RNA functions in vivo and reconstitutes activity in vitro
-
DOI 10.1038/nsmb1019
-
Zappulla DC, Goodrich K, Cech TR. 2005. A miniature yeast telomerase RNA functions in vivo and reconstitutes activity in vitro. Nat Struct Mol Biol 12: 1072-1077. (Pubitemid 41746777)
-
(2005)
Nature Structural and Molecular Biology
, vol.12
, Issue.12
, pp. 1072-1077
-
-
Zappulla, D.C.1
Goodrich, K.2
Cech, T.R.3
-
46
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
DOI 10.1093/nar/gkg595
-
Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415. (Pubitemid 37442169)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3406-3415
-
-
Zuker, M.1
|