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Volumn 287, Issue 17, 2012, Pages 14069-14077

Structural and biochemical characterization of glycoside hydrolase family 79 β-glucuronidase from Acidobacterium capsulatum

Author keywords

[No Author keywords available]

Indexed keywords

ACID BASE; BIOCHEMICAL CHARACTERIZATION; CARBOXYL GROUPS; CATALYTIC RESIDUE; D-GLUCURONIC ACID; EQUIVALENT PARAMETERS; GLUCOSIDASE; GLUCOSIDASE ACTIVITY; GLUCURONIDASE; GLYCOSIDE HYDROLASES; MAIN CHAINS; NMR ANALYSIS; O-METHYL GROUP; PRODUCT COMPLEX; SUBSTRATE DISCRIMINATION; TRACE LEVEL; WILD TYPES; WILD-TYPE ENZYMES; WILD-TYPE LEVELS; XYLOSIDASE;

EID: 84859958875     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M112.346288     Document Type: Article
Times cited : (39)

References (31)
  • 2
    • 0030733350 scopus 로고    scopus 로고
    • Structural and sequence-based classification of glycoside hydrolases
    • DOI 10.1016/S0959-440X(97)80072-3
    • Henrissat, B., and Davies, G. (1997) Structural and sequence-based classification of glycoside hydrolases. Curr. Opin. Struct. Biol. 7, 637-644 (Pubitemid 27472582)
    • (1997) Current Opinion in Structural Biology , vol.7 , Issue.5 , pp. 637-644
    • Henrissat, B.1    Davies, G.2
  • 4
    • 0034282448 scopus 로고    scopus 로고
    • Molecular characterization of a novel β-glucuronidase from Scutellaria baicalensis Georgi
    • Sasaki, K., Taura, F., Shoyama, Y., and Morimoto, S. (2000) Molecular characterization of a novel β-glucuronidase from Scutellaria baicalensis Georgi. J. Biol. Chem. 275, 27466-27472
    • (2000) J. Biol. Chem. , vol.275 , pp. 27466-27472
    • Sasaki, K.1    Taura, F.2    Shoyama, Y.3    Morimoto, S.4
  • 5
    • 51749117193 scopus 로고    scopus 로고
    • Purification, cloning and functional characterization of an endogenous β-glucuronidase in Arabidopsis thaliana
    • Eudes, A., Mouille, G., Thévenin, J., Goyallon, A., Minic, Z., and Jouanin, L. (2008) Purification, cloning and functional characterization of an endogenous β-glucuronidase in Arabidopsis thaliana. Plant Cell Physiol. 49, 1331-1341
    • (2008) Plant Cell Physiol. , vol.49 , pp. 1331-1341
    • Eudes, A.1    Mouille, G.2    Thévenin, J.3    Goyallon, A.4    Minic, Z.5    Jouanin, L.6
  • 6
    • 0035933551 scopus 로고    scopus 로고
    • Purification and characterization of a β-glucuronidase from Aspergillus niger
    • DOI 10.1016/S0008-6215(01)00114-8, PII S0008621501001148
    • Kuroyama, H., Tsutsui, N., Hashimoto, Y., and Tsumuraya, Y. (2001) Purification and characterization of a β-glucuronidase from Aspergillus niger. Carbohydr. Res. 333, 27-39 (Pubitemid 32539238)
    • (2001) Carbohydrate Research , vol.333 , Issue.1 , pp. 27-39
    • Kuroyama, H.1    Tsutsui, N.2    Hashimoto, Y.3    Tsumuraya, Y.4
  • 7
    • 41949132710 scopus 로고    scopus 로고
    • Properties of family 79 β-glucuronidases that hydrolyze β-glucuronosyl and 4-O-methyl-β-glucuronosyl residues of arabinogalactan-protein
    • Konishi, T., Kotake, T., Soraya, D., Matsuoka, K., Koyama, T., Kaneko, S., Igarashi, K., Samejima, M., and Tsumuraya, Y. (2008) Properties of family 79 β-glucuronidases that hydrolyze β-glucuronosyl and 4-O-methyl-β-glucuronosyl residues of arabinogalactan-protein. Carbohydr. Res. 343, 1191-1201
    • (2008) Carbohydr. Res. , vol.343 , pp. 1191-1201
    • Konishi, T.1    Kotake, T.2    Soraya, D.3    Matsuoka, K.4    Koyama, T.5    Kaneko, S.6    Igarashi, K.7    Samejima, M.8    Tsumuraya, Y.9
  • 8
    • 0029878731 scopus 로고    scopus 로고
    • Structure of human β-glucuronidase reveals candidate lysosomal targeting and active-site motifs
    • DOI 10.1038/nsb0496-375
    • Jain, S., Drendel, W. B., Chen, Z. W., Mathews, F. S., Sly, W. S., and Grubb, J. H. (1996) Structure of human β-glucuronidase reveals candidate lysosomal targeting and active-site motifs. Nat. Struct. Biol. 3, 375-381 (Pubitemid 26112636)
    • (1996) Nature Structural Biology , vol.3 , Issue.4 , pp. 375-381
    • Jain, S.1    Drendel, W.B.2    Chen, Z.-W.3    Mathews, F.S.4    Sly, W.S.5    Grubb, J.H.6
  • 10
    • 0034719130 scopus 로고    scopus 로고
    • Identification of active-site residues of the pro-metastatic endoglycosidase heparanase
    • DOI 10.1021/bi002080p
    • Hulett, M. D., Hornby, J. R., Ohms, S. J., Zuegg, J., Freeman, C., Gready, J. E., and Parish, C. R. (2000) Identification of active-site residues of the pro-metastatic endoglycosidase heparanase. Biochemistry 39, 15659-15667 (Pubitemid 32038227)
    • (2000) Biochemistry , vol.39 , Issue.51 , pp. 15659-15667
    • Hulett, M.D.1    Hornby, J.R.2    Ohms, S.J.3    Zuegg, J.4    Freeman, C.5    Gready, J.E.6    Parish, C.R.7
  • 11
    • 80055046592 scopus 로고    scopus 로고
    • Molecular model of human heparanase with proposed binding mode of a heparan sulfate oligosaccharide and catalytic amino acids
    • Sapay, N., Cabannes, E., Petitou, M., and Imberty, A. (2012) Molecular model of human heparanase with proposed binding mode of a heparan sulfate oligosaccharide and catalytic amino acids. Biopolymers 97, 21-34
    • (2012) Biopolymers , vol.97 , pp. 21-34
    • Sapay, N.1    Cabannes, E.2    Petitou, M.3    Imberty, A.4
  • 12
    • 83255163230 scopus 로고    scopus 로고
    • Computational analyses of the catalytic and heparin-binding sites and their interactions with glycosaminoglycans in glycoside hydrolase family 79 endo-β-D-glucuronidase (heparanase)
    • Gandhi, N. S., Freeman, C., Parish, C. R., and Mancera, R. L. (2012) Computational analyses of the catalytic and heparin-binding sites and their interactions with glycosaminoglycans in glycoside hydrolase family 79 endo-β-D-glucuronidase (heparanase). Glycobiology 22, 35-55
    • (2012) Glycobiology , vol.22 , pp. 35-55
    • Gandhi, N.S.1    Freeman, C.2    Parish, C.R.3    Mancera, R.L.4
  • 13
    • 0031921036 scopus 로고    scopus 로고
    • Ecological and physiological studies on large intestinal bacteria in relation to production of hydrolytic and reductive enzymes involved in formation of genotoxic metabolites
    • McBain, A. J., and Macfarlane, G. T. (1998) Ecological and physiological studies on large intestinal bacteria in relation to production of hydrolytic and reductive enzymes involved in formation of genotoxic metabolites. J. Med. Microbiol. 47, 407-416 (Pubitemid 28191044)
    • (1998) Journal of Medical Microbiology , vol.47 , Issue.5 , pp. 407-416
    • McBain, A.J.1    Macfarlane, G.T.2
  • 14
    • 0036021108 scopus 로고    scopus 로고
    • Comparison of four microbial enzymes in Clostridia and bacteroides isolated from human feces
    • Nakamura, J., Kubota, Y., Miyaoka, M., Saitoh, T., Mizuno, F., and Benno, Y. (2002) Comparison of four microbial enzymes in Clostridia and Bacteroides isolated from human feces. Microbiol. Immunol. 46, 487-490 (Pubitemid 34831212)
    • (2002) Microbiology and Immunology , vol.46 , Issue.7 , pp. 487-490
    • Nakamura, J.1    Kubota, Y.2    Miyaoka, M.3    Saitoh, T.4    Mizuno, F.5    Benno, Y.6
  • 15
    • 55949136053 scopus 로고    scopus 로고
    • Distribution of β-glucosidase and β-glucuronidase activity and of β-glucuronidase gene gus in human colonic bacteria
    • Dabek, M., McCrae, S. I., Stevens, V. J., Duncan, S. H., and Louis, P. (2008) Distribution of β-glucosidase and β-glucuronidase activity and of β-glucuronidase gene gus in human colonic bacteria. FEMS Microbiol. Ecol. 66, 487-495
    • (2008) FEMS Microbiol. Ecol. , vol.66 , pp. 487-495
    • Dabek, M.1    McCrae, S.I.2    Stevens, V.J.3    Duncan, S.H.4    Louis, P.5
  • 18
    • 0028943508 scopus 로고
    • Approaches to labeling and identification of active site residues in glycosidases
    • Withers, S. G., and Aebersold, R. (1995) Approaches to labeling and identification of active site residues in glycosidases. Protein Sci. 4, 361-372
    • (1995) Protein Sci. , vol.4 , pp. 361-372
    • Withers, S.G.1    Aebersold, R.2
  • 19
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • DOI 10.1016/S0076-6879(97)76066-X
    • Otwinowski, Z., and Minor, W. (1997) Processing of x-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326 (Pubitemid 27085611)
    • (1997) Methods in Enzymology , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 20
    • 0014432781 scopus 로고
    • Solvent content of protein crystals
    • Matthews, B. W. (1968) Solvent content of protein crystals. J. Mol. Biol. 33, 491-497
    • (1968) J. Mol. Biol. , vol.33 , pp. 491-497
    • Matthews, B.W.1
  • 28
    • 50249172181 scopus 로고    scopus 로고
    • Characterization of a modular enzyme of exo-1,5-α-L- arabinofuranosidase and arabinan binding module from Streptomyces avermitilis NBRC14893
    • Ichinose, H., Yoshida, M., Fujimoto, Z., and Kaneko, S. (2008) Characterization of a modular enzyme of exo-1,5-α-L-arabinofuranosidase and arabinan binding module from Streptomyces avermitilis NBRC14893. Appl. Microbiol. Biotechnol. 80, 399-408
    • (2008) Appl. Microbiol. Biotechnol. , vol.80 , pp. 399-408
    • Ichinose, H.1    Yoshida, M.2    Fujimoto, Z.3    Kaneko, S.4
  • 30
    • 0029645404 scopus 로고
    • Structures and mechanisms of glycosyl hydrolases
    • Davies, G., and Henrissat, B. (1995) Structures and mechanisms of glycosyl hydrolases. Structure 3, 853-859
    • (1995) Structure , vol.3 , pp. 853-859
    • Davies, G.1    Henrissat, B.2
  • 31
    • 0028956984 scopus 로고
    • β-Glucosidase, β-galactosidase, family A cellulases, family F xylanases and two barley glycanases form a superfamily of enzymes with 8-fold β/α architecture and with two conserved glutamates near the carboxyl-terminal ends of β-strands four and seven
    • Jenkins, J., Lo Leggio, L., Harris, G., and Pickersgill, R. (1995) β-Glucosidase, β-galactosidase, family A cellulases, family F xylanases and two barley glycanases form a superfamily of enzymes with 8-fold β/α architecture and with two conserved glutamates near the carboxyl-terminal ends of β-strands four and seven. FEBS Lett. 362, 281-285
    • (1995) FEBS Lett. , vol.362 , pp. 281-285
    • Jenkins, J.1    Lo Leggio, L.2    Harris, G.3    Pickersgill, R.4


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