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Volumn 862, Issue , 2012, Pages 23-33

Challenges in the DNA barcoding of plant material

Author keywords

CBOL; Data analysis; DNA barcoding; Land plants; matK; Plastid; rbcL

Indexed keywords

PLANT DNA;

EID: 84859858190     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-609-8_3     Document Type: Article
Times cited : (32)

References (46)
  • 3
    • 8844220527 scopus 로고    scopus 로고
    • Identification of birds through DNA barcodes
    • DOI 10.1371/journal.pbio.0020312
    • Hebert PDN et al (2004) Identifi cation of birds through DNA barcodes. PLoS Biol 2:e312. doi: 10.1371/journal.pbio.0020312. (Pubitemid 39532927)
    • (2004) PLoS Biology , vol.2 , Issue.10
    • Hebert, P.D.N.1    Stoeckle, M.Y.2    Zemlak, T.S.3    Francis, C.M.4
  • 5
    • 33845668492 scopus 로고    scopus 로고
    • Identifying Canadian mosquito species through DNA barcodes
    • DOI 10.1111/j.1365-2915.2006.00653.x
    • Cywinska A, Hunter FF, Hebert PDN (2006) Identifying Canadian mosquito species through DNA barcodes. Med Vet Entomol 20: 413-424 (Pubitemid 44952448)
    • (2006) Medical and Veterinary Entomology , vol.20 , Issue.4 , pp. 413-424
    • Cywinska, A.1    Hunter, F.F.2    Hebert, P.D.N.3
  • 6
    • 0033760831 scopus 로고    scopus 로고
    • Mitochondrial and chloroplast DNA-based phylogeny of Pelargonium (Geraniaceae)
    • Bakker FT, et al (2000. Mitochondrial and chloroplast DNA-based phylogeny of Pelargonium (Geraniaceae). Amer J Bot 87:727-734.
    • (2000) Amer J Bot , vol.87 , pp. 727-734
    • Bakker, F.T.1
  • 8
    • 31544435757 scopus 로고    scopus 로고
    • Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae
    • Parkinson P L, et al (2005) Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae. BMC Evol Biol 5:73.
    • (2005) BMC Evol Biol , vol.5 , pp. 73
    • Parkinson, P.L.1
  • 10
    • 9144239489 scopus 로고    scopus 로고
    • Gene transfer from parasitic to host plants
    • Mower J P, et al (2004) Plant genetics: gene transfer from parasitic to host plants. Nature 432:165-166. (Pubitemid 39545839)
    • (2004) Nature , vol.432 , Issue.7014 , pp. 165-166
    • Mower, J.P.1    Stefanovic, S.2    Young, G.J.3    Palmer, J.D.4
  • 11
    • 0000031660 scopus 로고
    • Phylogenetics of seed plants: An analysis of nucleotide sequences from the plastid gene rbcL
    • 550-580
    • Chase MW, et al (1993) Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL . Ann Mo Bot Gard 80: 528-548, 550-580.
    • (1993) Ann Mo Bot Gard , vol.80 , pp. 528-548
    • Chase, M.W.1
  • 12
    • 33645485964 scopus 로고    scopus 로고
    • Orchid conservation genetics. in the molecular age
    • Dixon KW, et al (eds.) Natural History Publications, Kota Kinabalu, Sabah
    • Fay MF, Krauss SL (2003) Orchid conservation genetics. in the molecular age. In: Dixon KW, et al (eds.), Orchid conservation. Natural History Publications, Kota Kinabalu, Sabah.
    • (2003) Orchid Conservation
    • Fay, M.F.1    Krauss, S.L.2
  • 13
    • 0037719825 scopus 로고    scopus 로고
    • Species delimitation and the origin of populations in island representatives of Phylica (Rhamnaceae)
    • Richardson JE, et al (2003) Species delimitation and the origin of populations in island representatives of Phylica (Rhamnaceae). Evolution 57:816-827. (Pubitemid 36573203)
    • (2003) Evolution , vol.57 , Issue.4 , pp. 816-827
    • Richardson, J.E.1    Fay, M.F.2    Cronk, Q.C.B.3    Chase, M.W.4
  • 15
    • 0034978663 scopus 로고    scopus 로고
    • Phylogenetics and classification of Cunoniaceae (Oxalidales) using chloroplast DNA sequences and morphology
    • Bradford JC, Barnes RW (2001) Phylogenetics and classifi cation of Cunoniaceae (Oxalidales) using chloroplast DNA sequences and morphology. Syst Bot 26:354-385. (Pubitemid 32550490)
    • (2001) Systematic Botany , vol.26 , Issue.2 , pp. 354-385
    • Bradford, J.C.1    Barnes, R.W.2
  • 16
    • 0033739202 scopus 로고    scopus 로고
    • Molecular analysis of orchid pollinaria and pollinaria-remains found on insects
    • Widmer A, et al (2000) Molecular analysis of orchid pollinaria and pollinaria-remains found on insects. Mol Ecol 9:1911-1914.
    • (2000) Mol Ecol , vol.9 , pp. 1911-1914
    • Widmer, A.1
  • 18
    • 20444366492 scopus 로고    scopus 로고
    • Use of DNA barcodes to identify fl owering plants
    • Kress JW, et al (2005) Use of DNA barcodes to identify fl owering plants. Proc Natl Acad Sci 102:8369-8374.
    • (2005) Proc Natl Acad Sci , vol.102 , pp. 8369-8374
    • Kress, J.W.1
  • 19
    • 58449087888 scopus 로고    scopus 로고
    • Selection of candidate coding DNA barcoding regions for use on land plants
    • Ford CS, et al (2009) Selection of candidate coding DNA barcoding regions for use on land plants. Bot J Linn 159:1-11.
    • (2009) Bot J Linn , vol.159 , pp. 1-11
    • Ford, C.S.1
  • 20
    • 77951631088 scopus 로고    scopus 로고
    • A two-locus global DNA barcode for land plants: The coding rbcL gene complements the non-coding trnH-psbA spacer region
    • doi: 10.1371/journal.pone.0000508
    • Kress WJ, Erickson DL (2007) A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS ONE 2: e508. doi: 10.1371/journal.pone.0000508.
    • (2007) PLoS ONE , vol.2
    • Kress, W.J.1    Erickson, D.L.2
  • 21
    • 11144284040 scopus 로고    scopus 로고
    • Complete chloroplast genome sequences from Korean ginseng (Panax schinseng Nees) and comparative analysis of sequence evolution among 17 vascular plants
    • DOI 10.1093/dnares/11.4.247
    • Kim KJ, Lee H-L (2004) Complete chloroplast genome sequences from Korean Ginseng ( Panax schinseng Nees) and comparative analysis of sequence evolution among 17 vascular plants. DNA Research 11:247-261. (Pubitemid 40040655)
    • (2004) DNA Research , vol.11 , Issue.4 , pp. 247-261
    • Kim, K.-J.1    Lee, H.-L.2
  • 24
    • 77952876316 scopus 로고    scopus 로고
    • Which moss is which? Identifi cation of the threatened moss Ortho dontium gracile using molecular and morphological techniques
    • Rowntree JK et al (2010) Which moss is which? Identifi cation of the threatened moss Ortho dontium gracile using molecular and morphological techniques. Conser Genet 11:1033-1042.
    • (2010) Conser Genet , vol.11 , pp. 1033-1042
    • Rowntree, J.K.1
  • 26
    • 69149084832 scopus 로고    scopus 로고
    • A DNA barcode for land plants
    • CBOL Plant Working Group
    • CBOL Plant Working Group (2009) A DNA barcode for land plants. Proc Natl Acad Sci U.S.A. 106:12794-12797.
    • (2009) Proc Natl Acad Sci U.S.A. , vol.106 , pp. 12794-12797
  • 28
    • 63149094617 scopus 로고    scopus 로고
    • A stuttering start to plant DNA barcoding: Microsatellites present a previously overlooked problem in non-coding plastid regions
    • Devey DS, Chase MW, Clarkson JJ (2009) A stuttering start to plant DNA barcoding: microsatellites present a previously overlooked problem in non-coding plastid regions. Taxon 58:7-15.
    • (2009) Taxon , vol.58 , pp. 7-15
    • Devey, D.S.1    Chase, M.W.2    Clarkson, J.J.3
  • 29
    • 65349124174 scopus 로고    scopus 로고
    • Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?
    • Fazekas AJ, et al (2009) Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?. Mol Ecol Resour 9:130-139.
    • (2009) Mol Ecol Resour , vol.9 , pp. 130-139
    • Fazekas, A.J.1
  • 30
    • 73249116618 scopus 로고    scopus 로고
    • Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama
    • Kress WJ, et al (2009) Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama. Proc Natl Acad Sci U.S.A. 106:18621-18626.
    • (2009) Proc Natl Acad Sci U.S.A. , vol.106 , pp. 18621-18626
    • Kress, W.J.1
  • 32
    • 0034983251 scopus 로고    scopus 로고
    • Phylogenetic analysis of Phylica L. (Rhamnaceae) with an emphasis on island species: Evidence from plastid trnL-F and nuclear internal transcribed spacer (ribosomal) DNA sequences
    • Richardson JE, et al (2001) Phylogenetic analysis of Phylica L. with an emphasis on island species: evidence from plastid trnL-F DNA and nuclear internal transcribed spacer (ribosomal DNA) sequences. Taxon 50:405-427. (Pubitemid 32500970)
    • (2001) Taxon , vol.50 , Issue.2 , pp. 405-427
    • Richardson, J.E.1    Weitz, F.M.2    Fay, M.F.3    Cronk, Q.C.B.4    Peter Linder, H.5    Reeves, G.6    Chase, M.W.7
  • 33
    • 0042785575 scopus 로고    scopus 로고
    • A model for chloroplast capture
    • Tsitrone A, Kirkpatrick M, Levin DA (2003) A model for chloroplast capture. Evolution 57:1776-1782. (Pubitemid 37096394)
    • (2003) Evolution , vol.57 , Issue.8 , pp. 1776-1782
    • Tsitrone, A.1    Kirkpatrick, M.2    Levin, D.A.3
  • 34
    • 50949096338 scopus 로고    scopus 로고
    • How does hybridization infl uence the decision making process in conservation? the genus Orchis (Orchidaceae) as a case history
    • Fay MF, et al (2007) How does hybridization infl uence the decision making process in conservation? The genus Orchis (Orchidaceae) as a case history. Lankesteriana 7:135-137.
    • (2007) Lankesteriana , vol.7 , pp. 135-137
    • Fay, M.F.1
  • 35
    • 0028837216 scopus 로고
    • Discordance between nuclear and chloroplast phylogenies in the Heuchera group (Saxifragaceae)
    • Soltis DE, Kuzoff RK (1995) Discordance between nuclear and chloroplast phylogenies in the Heuchera group (Saxifragaceae). Evolution 49:727-742.
    • (1995) Evolution , vol.49 , pp. 727-742
    • Soltis, D.E.1    Kuzoff, R.K.2
  • 36
    • 67649122180 scopus 로고    scopus 로고
    • Geographically extensive hybridization between the forest trees American butternut and Japanese walnut
    • Hoban SM et al (2009) Geographically extensive hybridization between the forest trees American butternut and Japanese walnut. Biol Letters 5:324-327.
    • (2009) Biol Letters , vol.5 , pp. 324-327
    • Hoban, S.M.1
  • 37
    • 0141454843 scopus 로고    scopus 로고
    • Progressive introgression between Brassica napus (oilseed rape) and B. rapa
    • DOI 10.1038/sj.hdy.6800335
    • Hansen LB, Siegismund HR and Jørgensen RB (2003) Progressive introgression between Brassica napus (oilseed rape) and B. rapa . Heredity 91:276-283. (Pubitemid 37181402)
    • (2003) Heredity , vol.91 , Issue.3 , pp. 276-283
    • Hansen, L.B.1    Siegismund, H.R.2    Jorgensen, R.B.3
  • 38
    • 67349137111 scopus 로고    scopus 로고
    • Spontaneous capture of oilseed rape ( Brassica napus ) chloroplasts by wild B. rapa : implications for the use of chloroplast transformation for biocontainment
    • Haider N, Allainguillaume J and Wilkinson MJ (2009) Spontaneous capture of oilseed rape ( Brassica napus ) chloroplasts by wild B. rapa : implications for the use of chloroplast transformation for biocontainment. Curr Genet 55:139-150.
    • (2009) Curr Genet , vol.55 , pp. 139-150
    • Haider, N.1    Allainguillaume, J.2    Wilkinson, M.J.3
  • 39
    • 33748529969 scopus 로고    scopus 로고
    • On the abundance of polyploids in fl owering plants
    • Meyers LA, Levin DA (2006). On the abundance of polyploids in fl owering plants. Evolution 60:1198-1206.
    • (2006) Evolution , vol.60 , pp. 1198-1206
    • Meyers, L.A.1    Levin, D.A.2
  • 41
    • 34447311358 scopus 로고    scopus 로고
    • Parentage of endemic Sorbus L. (Rosaceae) species in the British Isles: Evidence from plastid DNA
    • DOI 10.1111/j.1095-8339.2007.00669.x
    • Chester M, et al (2007) Parentage of endemic Sorbus L. (Rosaceae) species in the British Isles: evidence from plastid DNA. Bot J Linn Soc 154:291-304. (Pubitemid 47052712)
    • (2007) Botanical Journal of the Linnean Society , vol.154 , Issue.3 , pp. 291-304
    • Chester, M.1    Cowan, R.S.2    Fay, M.F.3    Rich, T.C.G.4
  • 43
    • 84859839409 scopus 로고    scopus 로고
    • Cameron, K. University of Wisconsin, pers. comm
    • Cameron, K. University of Wisconsin, pers. comm.
  • 46
    • 33847767178 scopus 로고    scopus 로고
    • A comparison of algorithms for the identification of specimens using DNA barcodes: Examples from gymnosperms
    • DOI 10.1111/j.1096-0031.2006.00126.x
    • Little DP, Stevenson DW (2007) A comparison of algorithms for the identifi cation of specimens using DNA barcodes: examples from gymnosperms. Cladistics 23:1-21. (Pubitemid 46376264)
    • (2007) Cladistics , vol.23 , Issue.1 , pp. 1-21
    • Little, D.P.1    Stevenson, D.Wm.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.