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Volumn 28, Issue 8, 2012, Pages 1062-1069

Signal analysis for genome-wide maps of histone modifications measured by ChIP-seq

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE;

EID: 84859736677     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts085     Document Type: Article
Times cited : (8)

References (25)
  • 1
    • 80052276278 scopus 로고    scopus 로고
    • Making sense of chromatin states
    • Baker, M. (2011) Making sense of chromatin states.Nat. Methods, 8, 717-722.
    • (2011) Nat. Methods , vol.8 , pp. 717-722
    • Baker, M.1
  • 2
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • Barski, A. et al. (2007) High-resolution profiling of histone methylations in the human genome. Cell, 129, 823-837.
    • (2007) Cell , vol.129 , pp. 823-837
    • Barski, A.1
  • 4
    • 77954171220 scopus 로고    scopus 로고
    • Contrasting chromatin organization of CpG islands and exons in the human genome
    • Choi, J.K. (2010) Contrasting chromatin organization of CpG islands and exons in the human genome. Genome Biol., 11, R70.
    • (2010) Genome Biol. , vol.11
    • Choi, J.K.1
  • 5
    • 79951531339 scopus 로고    scopus 로고
    • Predicting gene expression in T-cell differentiation from histone modifications and transcription factor binding affinities by linear mixture models
    • Costa, I.G. et al. (2011) Predicting gene expression in T-cell differentiation from histone modifications and transcription factor binding affinities by linear mixture models. BMC Bioinformatics, 12 (Suppl. 1), S29.
    • (2011) BMC Bioinformatics , vol.12 , Issue.SUPPL. 1
    • Costa, I.G.1
  • 7
    • 41349096445 scopus 로고    scopus 로고
    • Gene regulation by transcription factors and microRNAs
    • Hobert, O. (2008) Gene regulation by transcription factors and microRNAs. Science, 319, 1785-1786.
    • (2008) Science , vol.319 , pp. 1785-1786
    • Hobert, O.1
  • 8
    • 0000008146 scopus 로고
    • Comparing partitions
    • Hubert, L. and Arabie, P. (1985) Comparing partitions. J Classif., 2, 193-218.
    • (1985) J Classif. , vol.2 , pp. 193-218
    • Hubert, L.1    Arabie, P.2
  • 9
    • 77649246145 scopus 로고    scopus 로고
    • Histone modification levels are predictive for gene expression
    • Karlic, R. et al. (2010) Histone modification levels are predictive for gene expression. Proc. Natl Acad. Sci. USA, 107, 2926-2931.
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 2926-2931
    • Karlic, R.1
  • 10
    • 64049102668 scopus 로고    scopus 로고
    • Distinct transcriptional outputs associated with mono- and dimethylated histone H3 arginine 2
    • Kirmizis, A. et al. (2009) Distinct transcriptional outputs associated with mono- and dimethylated histone H3 arginine 2. Nat. Struct. Mol. Biol., 16, 449-451.
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 449-451
    • Kirmizis, A.1
  • 11
    • 70449711243 scopus 로고    scopus 로고
    • Computation for ChIP-seq and RNA-seq studies
    • Pepke, S. et al. (2009) Computation for ChIP-seq and RNA-seq studies. Nat. Methods, 6, S22-S32.
    • (2009) Nat. Methods , vol.6
    • Pepke, S.1
  • 12
    • 0027627780 scopus 로고
    • LPC spectral moments for clustering acoustic transients
    • Pinkowski, B. (1993) LPC spectral moments for clustering acoustic transients. IEEE T. Speech Audi. P., 1, 362-368.
    • (1993) IEEE T. Speech Audi. P. , vol.1 , pp. 362-368
    • Pinkowski, B.1
  • 13
    • 67650064594 scopus 로고    scopus 로고
    • The consensus coding sequence (CCDS) project: identifying a common protein-coding gene set for the human and mouse genomes
    • Pruitt, K.D. et al. (2009) The consensus coding sequence (CCDS) project: identifying a common protein-coding gene set for the human and mouse genomes. Genome Res., 19, 1316-1323.
    • (2009) Genome Res. , vol.19 , pp. 1316-1323
    • Pruitt, K.D.1
  • 15
    • 76949093375 scopus 로고    scopus 로고
    • Nucleosome positioning: how is it established, and why does it matter?
    • Radman-Livaja, M. and Rando, O.J. (2010) Nucleosome positioning: how is it established, and why does it matter? Dev. Biol., 339, 258-266.
    • (2010) Dev. Biol. , vol.339 , pp. 258-266
    • Radman-Livaja, M.1    Rando, O.J.2
  • 16
    • 39749145198 scopus 로고    scopus 로고
    • Dynamic regulation of nucleosome positioning in the human genome
    • Schones, D.E. et al. (2008) Dynamic regulation of nucleosome positioning in the human genome. Cell, 132, 887-898.
    • (2008) Cell , vol.132 , pp. 887-898
    • Schones, D.E.1
  • 17
    • 0003260456 scopus 로고    scopus 로고
    • Density Estimation for Statistics and Data Analysis
    • Chapman & Hall/CRC, Boca Raton
    • Silverman, B.W. (1998) Density Estimation for Statistics and Data Analysis. Monographs on statistics and applied probability 26. Chapman & Hall/CRC, Boca Raton.
    • (1998) Monographs on statistics and applied probability , vol.26
    • Silverman, B.W.1
  • 18
    • 11144358198 scopus 로고    scopus 로고
    • A gene atlas of the mouse and human protein-encoding transcriptomes
    • Su, A.I. et al. (2004) A gene atlas of the mouse and human protein-encoding transcriptomes. Proc. Natl Acad. Sci. USA, 101, 6062-6067.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 6062-6067
    • Su, A.I.1
  • 19
    • 33750021210 scopus 로고    scopus 로고
    • Evaluation and comparison of gene clustering methods in microarray analysis
    • Thalamuthu, A. et al. (2006) Evaluation and comparison of gene clustering methods in microarray analysis. Bioinformatics, 22, 2405-2412.
    • (2006) Bioinformatics , vol.22 , pp. 2405-2412
    • Thalamuthu, A.1
  • 20
    • 50849090969 scopus 로고    scopus 로고
    • Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data
    • Valouev, A.. et al. (2008) Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data. Nat. Meth., 5, 829-834.
    • (2008) Nat. Meth. , vol.5 , pp. 829-834
    • Valouev, A.1
  • 21
    • 46249112085 scopus 로고    scopus 로고
    • Combinatorial patterns of histone acetylations and methylations in the human genome
    • Wang, Z. et al. (2008) Combinatorial patterns of histone acetylations and methylations in the human genome. Nat. Genet., 40, 897-903.
    • (2008) Nat. Genet. , vol.40 , pp. 897-903
    • Wang, Z.1
  • 22
    • 0004246255 scopus 로고    scopus 로고
    • Cold Spring Harbor Laboratory Press, New York, USA
    • Watson, J.D. (2003) Molecular Biology of the Gene. Cold Spring Harbor Laboratory Press, New York, USA.
    • (2003) Molecular Biology of the Gene
    • Watson, J.D.1
  • 23
    • 77954766475 scopus 로고    scopus 로고
    • Application of machine learning methods to histone methylation ChIP-Seq data reveals H4R3me2 globally represses gene expression
    • Xu, X. et al. (2010) Application of machine learning methods to histone methylation ChIP-Seq data reveals H4R3me2 globally represses gene expression. BMC Bioinformatics, 11, 396.
    • (2010) BMC Bioinformatics , vol.11 , pp. 396
    • Xu, X.1
  • 24
    • 80053217575 scopus 로고    scopus 로고
    • ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity
    • Young, M.D. et al. (2011) ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity. Nucleic Acids Res., 39, 7415-7427.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 7415-7427
    • Young, M.D.1
  • 25
    • 48949099045 scopus 로고    scopus 로고
    • Inferring causal relationships among different histone modifications and gene expression
    • Yu, H. et al. (2008) Inferring causal relationships among different histone modifications and gene expression. Genome Res., 18, 1314-1324.
    • (2008) Genome Res. , vol.18 , pp. 1314-1324
    • Yu, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.