Description of Sinomonas soli sp. nov., reclassification of Arthrobacter echigonensis and Arthrobacter albidus (Ding et al. 2009) as Sinomonas echigonensis comb. nov. and Sinomonas albida comb. nov., respectively, and emended description of the genus Sinomonas

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 4, 2012, Pages 764-769

  Zhou, Yu ^a,b   Chen, Xiaoyun ^a   Zhang, Yu ^a   Wang, Wei ^a   Xu, Junfeng ^a  

^a INSTITUTE OF PLANT PROTECTION AND MICROBIOLOGY   (China)

^b YUNNAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; CARDIOLIPIN; FATTY ACID; GALACTOSE; GENOMIC DNA; GLUCOSE; GLUTAMIC ACID; GLYCOLIPID; LYSINE; MANNOSE; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLINOSITOL; PHOSPHATIDYLMETHYLETHANOLAMINE; QUINONE DERIVATIVE; RIBOSE; RNA 16S; UNCLASSIFIED DRUG;

ACTINOBACTERIA; ARTHROBACTER; ARTHROBACTER ALBIDUS; ARTHROBACTER ECHIGONENSIS; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CELL WALL; CHEMOTAXONOMY; CHINA; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; FOREST SOIL; GENE SEQUENCE; LIPID COMPOSITION; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SINOMONAS ALBIDA; SINOMONAS ATROCYANEA; SINOMONAS ECHIGONENSIS; SINOMONAS FLAVA; SINOMONAS SOLI; WHOLE CELL;

AMINO ACIDS; ARTHROBACTER; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CELL WALL; CHINA; DNA, BACTERIAL; FATTY ACIDS; MICROCOCCACEAE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; POLYCYCLIC HYDROCARBONS, AROMATIC; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SOIL POLLUTANTS; TREES; VITAMIN K 2;

ARTHROBACTER;

EID: 84859715509     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.030361-0     Document Type: Article

References (23)

1. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
2. Ding, L., Hirose, T. & Yokota, A. (2009). Four novel Arthrobacter species isolated from filtration substrate. Int J Syst Evol Microbiol 59, 856-862.
3. Felsenstein, J. (1985). Conference limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-789.
4. Hu, H. Y., Lim, B. R., Goto, N. & Fujie, K. (2001). Analytical precision and repeatability of respiratory quinones for quantitative study of microbial community structure in environmental samples. J Microbiol Methods 47, 17-24.
5. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
6. Jahnke, K. D. (1992). BASIC computer program for evaluation of spectroscopic DNA renaturation data from GILFORD SYSTEM 2600 spectrophotometer on a PC/XT/AT type personal computer. JMicrobiol Methods 15, 61-73.
7. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
8. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
9. Kuhn, D. A. & Starr, M. P. (1960). Arthrobacter atrocyaneus, n. sp., and its blue pigment. Arch Mikrobiol 36, 175-181.
10. Kumar, S., Tamura, K. & Nei, M. (2004). mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
11. Li, W. J., Xu, P., Schumann, P., Zhang, Y. Q., Pukall, R., Xu, L. H., Stackebrandt, E. & Jiang, C. L. (2007). Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57, 1424-1428.
12. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
13. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
14. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
15. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newslett 20, 1-6.
16. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
17. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
18. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
19. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
20. Wieser, M., Denner, E. B. M., Kämpfer, P., Schumann, P., Tindall, B., Steiner, U., Vybiral, D., Lubitz, W., Maszenan, A. M. & other authors (2002). Emended descriptions of the genus Micrococcus, Micrococcus luteus (Cohn 1872) and Micrococcus lylae (Kloos et al. 1974). Int J Syst Evol Microbiol 52, 629-637.
21. Yoon, J. H., Kim, I. G., Kang, K. H., Oh, T. K. & Park, Y. H. (2003). Bacillus marisflavi sp. nov. and Bacillus aquimaris sp. nov., isolated from sea water of a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol 53, 1297-1303.
22. Zhou, Y., Dong, J., Wang, X., Huang, X., Zhang, K. Y., Zhang, Y. Q., Guo, Y. F., Lai, R. & Li, W. J. (2007). Chryseobacterium flavum sp. nov., isolated from polluted soil. Int J Syst Evol Microbiol 57, 1765-1769.
23. Zhou, Y., Wei, W., Wang, X. & Lai, R. (2009). Proposal of Sinomonas flava gen. nov., sp. nov., and description of Sinomonas atrocyanea comb. nov. to accommodate Arthrobacter atrocyaneus. Int J Syst Evol Microbiol 59, 259-263.