Carboxydocella manganica sp. nov., a thermophilic, dissimilatory Mn(IV)- and Fe(III)-reducing bacterium from a Kamchatka hot spring

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 4, 2012, Pages 890-894

  Slobodkina, G B ^a   Panteleeva, A N ^b   Sokolova, T G ^a   Bonch Osmolovskaya, E A ^a   Slobodkin, A I ^a  

^a WINOGRADSKY INSTITUTE OF MICROBIOLOGY   (Russian Federation)

^b INSTITUTE OF BIOENGINEERING   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CARBON DIOXIDE; CARBOXYLIC ACID; FERRIC ION; FRUCTOSE; GLUCOSE; HYDROGEN; MALTOSE; MANGANESE; NITRATE; PYRUVIC ACID; SUCROSE;

ANAEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; CARBON SOURCE; CARBOXYDOCELLA MANGANICA; CELL MOTILITY; FLAGELLUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PRIORITY JOURNAL; THERMAL SPRING; THERMOPHILIC BACTERIUM; YEAST;

BACTERIA, ANAEROBIC; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHEMOAUTOTROPHIC GROWTH; DNA, BACTERIAL; FATTY ACIDS; FERRIC COMPOUNDS; GEOLOGIC SEDIMENTS; HOT SPRINGS; MANGANESE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; RUSSIA; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); CARBOXYDOCELLA; CARBOXYDOCELLA THERMAUTOTROPHICA;

EID: 84859712445     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.027623-0     Document Type: Article

References (19)

1. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
2. Benson, D. A., Boguski, M. S., Lipman, D. J., Ostell, J., Ouellette, B. F., Rapp, B. A. & Wheeler, D. L. (1999). GenBank. Nucleic Acids Res 27, 12-17.
3. Boone, D. R., Liu, Y., Zhao, Z.-J., Balkwill, D. L., Drake, G. R., Stevens, T. O. & Aldrich, H. C. (1995). Bacillus infernus sp. nov., an Fe(III)-and Mn(IV)-reducing anaerobe from the deep terrestrial subsurface. Int J Syst Bacteriol 45, 441-448.
4. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
5. 2 in alkali medium: effects of synthesis conditions. Clays Clay Miner 52, 240-250.
6. Goto, K., Komatsu, T. & Furukawa, T. (1962). Rapid colorimetric determination of manganese in waters containing iron: a modification of the formaldoxime method. Anal Chim Acta 27, 331-334.
7. Greene, A. C., Patel, B. K. C. & Sheehy, A. J. (1997). Deferribacter thermophilus gen. nov., sp. nov., a novel thermophilic manganeseand iron-reducing bacterium isolated from a petroleum reservoir. Int J Syst Bacteriol 47, 505-509.
8. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
9. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
10. Lovley, D. R., Holmes, D. E. & Nevin, K. P. (2004). Dissimilatory Fe(III) and Mn(IV) reduction. Adv Microb Physiol 49, 219-286.
11. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
12. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
13. 2-producing thermophilic bacterium from a Kamchatka hot spring. Int J Syst Evol Microbiol 56, 797-800.
14. Slobodkin, A. I. (2005). Thermophilic microbial metal reduction. Microbiology (English translation of Mikrobiologiia) 74, 501-514.
15. Slobodkin, A. I., Tourova, T. P., Kuznetsov, B. B., Kostrikina, N. A., Chernyh, N. A. & Bonch-Osmolovskaya, E. A. (1999). Thermoanaerobacter siderophilus sp. nov., a novel dissimilatory Fe(III)-reducing, anaerobic, thermophilic bacterium. Int J Syst Bacteriol 49, 1471-1478.
16. Sokolova, T. G., Kostrikina, N. A., Chernyh, N. A., Tourova, T. P., Kolganova, T. V. & Bonch-Osmolovskaya, E. A. (2002). Carboxydocella thermautotrophica gen. nov., sp. nov., a novel anaerobic, CO-utilizing thermophile from a Kamchatkan hot spring. Int J Syst Evol Microbiol 52, 1961-1967.
17. Tamura, K., Nei, M. & Kumar, S. (2004). Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci U S A 101, 11030-11035.
18. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). mega4: molecular evolutionary genetics analysis (mega) software version 4.0. Mol Biol Evol 24, 1596-1599.
19. Woese, C. R., Achenbach, L., Rouviere, P. & Mandelco, L. (1991). Archaeal phylogeny: reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts. Syst Appl Microbiol 14, 364-371.