Pseudoclavibacter caeni sp. nov., isolated from sludge of a sewage disposal plant

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 4, 2012, Pages 786-790

  Srinivasan, Sathiyaraj ^a,b   Kim, Hyun Sook ^a   Kim, Myung Kyum ^a   Lee, Myungjin ^b  

^a Seoul Women University   (South Korea)

^b H Plus Eco Ltd   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

2,4 DIAMINOBUTRYIC ACID; CYTOSINE; FATTY ACID; GUANINE; PEPTIDOGLYCAN; QUINONE DERIVATIVE; RNA 16S; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; CLADISTICS; CONTROLLED STUDY; GRAM POSITIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; PSEUDOCLAVIBACTER CAENI; RNA SEQUENCE; SEWAGE DISPOSAL; SLUDGE DISPOSAL; SOUTH KOREA; TAXONOMIC IDENTIFICATION;

ACTINOMYCETALES; AMINOBUTYRATES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PEPTIDOGLYCAN; PHYLOGENY; REPUBLIC OF KOREA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE; VITAMIN K 2;

BACTERIA (MICROORGANISMS); MICROBACTERIACEAE; POSIBACTERIA; PSEUDOCLAVIBACTER;

EID: 84859707227     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.028951-0     Document Type: Article

References (20)

1. Buck, J. D. (1982). Nonstaining (KOH) method for determination of gram reactions of marine bacteria. Appl Environ Microbiol 44, 992-993.
2. Cappuccino, J. G. & Sherman, N. (2002). Microbiology: a Laboratory Manual, 6th edn. San Francisco: Benjamin Cummings.
3. Cho, S. L., Jung, M. Y., Park, M. H., Chang, Y. H., Yoon, J. H., Myung, S. C. & Kim, W. (2010). Pseudoclavibacter chungangensis sp. nov., isolated from activated sludge. Int J Syst Evol Microbiol 60, 1672-1677.
4. Felsenstein, J. (1985). Confidence limit on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
5. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
6. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
7. Hiraishi, A., Ueda, Y., Ishihara, J. & Mori, T. (1996). Comparative lipoquinone analysis of influent sewage and activated sludge by high performance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 42, 457-469.
8. Kim, M. K. & Jung, H. Y. (2009). Pseudoclavibacter soli sp. nov., a β-glucosidase-producing bacterium. Int J Syst Evol Microbiol 59, 835-838.
9. Kim, M. K., Im, W.-T., Ohta, H., Lee, M. & Lee, S.-T. (2005). Sphingopyxis granuli sp. nov., a β-glucosidase-producing bacterium in the family Sphingomonadaceae in α-4 subclass of the Proteobacteria. J Microbiol 43, 152-157.
10. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
11. Kumar, S., Tamura, K. & Nei, M. (2004). mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
12. Kuykendall, L. D., Roy, M. A., O'Neill, J. J. & Devine, T. E. (1988). Fatty acids, antibiotic resistance and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Bacteriol 38, 358-361.
13. Manaia, C. M., Nogales, B., Weiss, N. & Nunes, O. C. (2004). Gulosibacter molinativorax gen. nov., sp. nov., a molinate-degrading bacterium, and classification of 'Brevibacterium helvolum' DSM 20419 as Pseudoclavibacter helvolus gen. nov., sp. nov. Int J Syst Evol Microbiol 54, 783-789.
14. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
15. Minnikin, D. E., Patel, P. V., Alshamaony, L. & Goodfellow, M. (1977). Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27, 104-117.
16. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
17. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
18. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
19. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
20. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.