Fourier transform infrared microspectroscopy identifies early lineage commitment in differentiating human embryonic stem cells

Stem Cell Research

Volumn 4, Issue 2, 2010, Pages 140-147

  Heraud, Philip ^a   Ng, Elizabeth S ^a   Caine, Sally ^a   Yu, Qing C ^a   Hirst, Claire ^a   Mayberry, Robyn ^a   Bruce, Amanda ^a   Wood, Bayden R ^a   McNaughton, Don ^a   Stanley, Edouard G ^a   Elefanty, Andrew G ^a  

^a MONASH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOINFORMATICS; CELL DIFFERENTIATION; CELL LINEAGE; CONTROLLED STUDY; ECTODERM; EMBRYONIC STEM CELL; HUMAN; HUMAN CELL; INFRARED SPECTROSCOPY; MESODERM; PRIORITY JOURNAL;

CELL DIFFERENTIATION; COMPUTATIONAL BIOLOGY; EMBRYONIC STEM CELLS; LEAST-SQUARES ANALYSIS; PRINCIPAL COMPONENT ANALYSIS; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EID: 76749141977     PISSN: 18735061     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scr.2009.11.002     Document Type: Article

References (19)

1. Abdi H. PLS-regression: multivariate analysis. In: Lewis-Beck M., Bryman A., and Futing T. (Eds). Encyclopedia for Research Methods for the Social Sciences (2003), Sage, Thousand Oaks, CA
2. Ami I., Neri T., Natalello A., Mereghetti P., Doglia S.M., Zanoni M., Zuccotti M., Garagna S., and Redi C.A. Embryonic stem cell differentiation studied by FT-IR spectroscopy. Biochim. Biophys. Acta Mol. Cell Res. 1783 (2008) 98-106
3. Chalmers J.M., and Dent G. Vibrational spectroscopic methods in pharmaceutical solid-state characterization. In: Hilfiker R. (Ed). Polymorphism in the Pharmaceutical Industry (2006), Wiley-VCH, Weinheim, Germany
4. Costa M., Sourris K., Hatzistavrou T., Elefanty A.G., and Stanley E.G. Expansion of human embryonic stem cells in vitro. Curr. Protoc. Stem Cell Biol. Chap. 1 (2008) 1C.1.1-1C.1.7
5. Davis R.P., Ng E.S., Costa M., Mossman A.K., Sourris K., Elefanty A.G., and Stanley E.G. Targeting a GFP reporter gene to the MIXL1 locus of human embryonic stem cells identifies human primitive streak-like cells and enables isolation of primitive hematopoietic precursors. Blood 111 (2008) 1876-1884
6. Diem M., Boydston-White S., and Chiriboga L. Infrared spectroscopy of living cells: shining light onto a novel subject. Appl. Spectrosc. 53 (1998) 148A-161A
7. Di-Gregorio A., Sancho M., Stuckey D.W., Crompton L.A., Godwin J., Mishina Y., and Rodriguez T.A. BMP signalling inhibits premature neural differentiation in the mouse embryo. Development 134 (2007) 3359-3369
8. Geladi P. Notes on the history and nature of partial least squares (PLS) modelling. J. Chemometrics 2 (1988) 231-246
9. Heraud P., Beardall J., Wood B.R., and McNaughton D. Effects of pre-processing of Raman spectra on in vivo classification of nutrient status of microalgal cells. J. Chemometrics 20 (2006) 193-197
10. Hornik K., Stinchcombe M., and White H. Multilayer feedforward networks are universal approximators. Neural Netw. 2 (1989) 359-366
11. Krafft C., Salzer R., Seitz S., Ern C., and Schieker M. Differentiation of individual human mesenchymal stem cells probed by FT-IR microscopic imaging. Analyst 132 (2007) 647-653
12. Mantsch H.H., Yang P.W., and Casal H.L. Infrared spectrometry of living systems: current trends and perspectives. J. Mol. Struct. 141 (1986) 237-242
13. Martens H., Nielsen J.P., and Engelsen S.B. Light scattering and light absorbance separated by extended multiplicative signal correction: application to near infrared transmission analysis of powder mixtures. Anal. Chem. 75 (2003) 394-404
14. Murry C.E., and Keller G. Differentiation of embryonic stem cells to clinically relevant populations: lessons from embryonic development. Cell 132 (2008) 661-680
15. Naumann D., Helman D., and Labischinski H. Microbiological characterizations by FT-IR spectroscopy. Nature 351 (1991) 81-82
16. Ng E.S., Davis R., Stanley E.G., and Elefanty A.G. A protocol describing the use of a recombinant protein-based, animal product free medium (APEL) for human embryonic stem cell differentiation as spin embryoid bodies. Nat. Protoc. 3 (2008) 768-776
17. Ng E.S., Davis R.P., Hatzistavrou T., Stanley E.G., and Elefanty A.G. Directed differentiation of human embryonic stem cells as spin embryoid bodies and a description of the hematopoietic blast colony forming assay. Curr. Protoc. Stem Cell Biol. Chap. 1 (2008) 1D.3.1-1D.3.23
18. Wood B.R., and McNaughton D. FPA imaging and spectroscopy for monitoring chemical changes in tissue. In: Bhargave R., and Levin I. (Eds). Spectrochemical Analyses Using Multichannel Infrared Detectors (2005), Blackwell, Oxford
19. Wood B.R., Quinn M.A., Tait B., Ashdown M., Hislop T., Romeo M., and McNaughton D. FT-IR microspectroscopic study of cell types and potential confounding variables in screening for cervical malignancies. Biospectroscopy 4 (1998) 75-91