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Volumn 420, Issue 3, 2012, Pages 692-697

The structure of putative N-acetyl glutamate kinase from Thermus thermophilus reveals an intermediate active site conformation of the enzyme

Author keywords

Arginine biosynthesis; Catalytic cycle; Crystal structure; Intermediate conformation; N acetyl l glutamate kinase

Indexed keywords

ACETYLGLUTAMATE KINASE; ARGININE; PHOSPHOTRANSFERASE; UNCLASSIFIED DRUG;

EID: 84859622203     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2012.03.072     Document Type: Article
Times cited : (12)

References (28)
  • 2
    • 41949141258 scopus 로고    scopus 로고
    • Basis of arginine sensitivity of microbial N-acetyl-l-glutamate kinases: mutagenesis and protein engineering study with the Pseudomonas aeruginosa and Escherichia coli enzymes
    • Fernández-Murga M.L., Rubio V. Basis of arginine sensitivity of microbial N-acetyl-l-glutamate kinases: mutagenesis and protein engineering study with the Pseudomonas aeruginosa and Escherichia coli enzymes. J. Bacteriol. 2008, 90:3018-3025.
    • (2008) J. Bacteriol. , vol.90 , pp. 3018-3025
    • Fernández-Murga, M.L.1    Rubio, V.2
  • 3
    • 0016659528 scopus 로고
    • N-Acetylglutamate 5-phosphotransferase of Pseudomonas aeruginosa. Purification and ligand-directed association-dissociation
    • Haas D., Leisinger T. N-Acetylglutamate 5-phosphotransferase of Pseudomonas aeruginosa. Purification and ligand-directed association-dissociation. Eur. J. Biochem. 1975, 52:365-375.
    • (1975) Eur. J. Biochem. , vol.52 , pp. 365-375
    • Haas, D.1    Leisinger, T.2
  • 4
    • 4444234384 scopus 로고    scopus 로고
    • Arginine biosynthesis in Thermotoga maritima: characterization of the arginine-sensitive N-acetyl-l-glutamate kinase
    • Fernández-Murga M.L., Gil-Ortiz F., Llácer J.L., Rubio V. Arginine biosynthesis in Thermotoga maritima: characterization of the arginine-sensitive N-acetyl-l-glutamate kinase. J. Bacteriol. 2004, 186:6142-6149.
    • (2004) J. Bacteriol. , vol.186 , pp. 6142-6149
    • Fernández-Murga, M.L.1    Gil-Ortiz, F.2    Llácer, J.L.3    Rubio, V.4
  • 5
    • 26844567216 scopus 로고    scopus 로고
    • Genes, enzymes and regulation of arginine biosynthesis in plants
    • Slocum R.D. Genes, enzymes and regulation of arginine biosynthesis in plants. Plant Physiol. Biochem. 2005, 43:729-745.
    • (2005) Plant Physiol. Biochem. , vol.43 , pp. 729-745
    • Slocum, R.D.1
  • 6
    • 33947378256 scopus 로고    scopus 로고
    • Surprising arginine biosynthesis: a reappraisal of the enzymology and evolution of the pathway in microorganisms
    • Xu Y., Labedan B., Glansdorff N. Surprising arginine biosynthesis: a reappraisal of the enzymology and evolution of the pathway in microorganisms. Microbiol. Mol. Biol. Rev. 2007, 71:36-47.
    • (2007) Microbiol. Mol. Biol. Rev. , vol.71 , pp. 36-47
    • Xu, Y.1    Labedan, B.2    Glansdorff, N.3
  • 7
    • 37249081440 scopus 로고    scopus 로고
    • Structural basis for the regulation of N-acetylglutamate kinase by PII in Arabidopsis thaliana
    • Mizuno Y., Moorhead G.B., Ng Kenneth K.S. Structural basis for the regulation of N-acetylglutamate kinase by PII in Arabidopsis thaliana. J. Biol. Chem. 2007, 282:35733-35740.
    • (2007) J. Biol. Chem. , vol.282 , pp. 35733-35740
    • Mizuno, Y.1    Moorhead, G.B.2    Ng Kenneth, K.S.3
  • 8
    • 31344471928 scopus 로고    scopus 로고
    • Structural bases of feed-back control of arginine biosynthesis, revealed by the structures of two hexameric N-acetylglutamate kinases, from Thermotoga maritima and Pseudomonas aeruginosa
    • Ramón-Maiques S., Fernández-Murga M.L., Gil-Ortiz F., Vagin A., Fita I., Rubio V. Structural bases of feed-back control of arginine biosynthesis, revealed by the structures of two hexameric N-acetylglutamate kinases, from Thermotoga maritima and Pseudomonas aeruginosa. J. Mol. Biol. 2006, 356:695-713.
    • (2006) J. Mol. Biol. , vol.356 , pp. 695-713
    • Ramón-Maiques, S.1    Fernández-Murga, M.L.2    Gil-Ortiz, F.3    Vagin, A.4    Fita, I.5    Rubio, V.6
  • 10
    • 0024605059 scopus 로고
    • Participation of ornithine aminotransferase in the synthesis and catabolism of ornithine in mice. Studies using gabaculine and arginine deprivation
    • Alonso E., Rubio V. Participation of ornithine aminotransferase in the synthesis and catabolism of ornithine in mice. Studies using gabaculine and arginine deprivation. Biochem. J. 1979, 259:131-138.
    • (1979) Biochem. J. , vol.259 , pp. 131-138
    • Alonso, E.1    Rubio, V.2
  • 11
    • 0020864994 scopus 로고
    • Catalysts of the urea cycle
    • Jones M.E. Catalysts of the urea cycle. Trans. N. Y. Acad. Sci. 1983, 41:77-82.
    • (1983) Trans. N. Y. Acad. Sci. , vol.41 , pp. 77-82
    • Jones, M.E.1
  • 12
    • 0031059866 scopus 로고    scopus 로고
    • Processing of Xray diffraction data collected in oscillation model
    • Otwinowski Z., Minor W. Processing of Xray diffraction data collected in oscillation model. Methods Enzymol. 1997, 276:307-326.
    • (1997) Methods Enzymol. , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 15
    • 0032964481 scopus 로고    scopus 로고
    • Automated protein model building combined with iterative structure refinement
    • Perrakis A., Morris R., Lamzin V.S. Automated protein model building combined with iterative structure refinement. Nat. Struct. Biol. 1999, 6:458-463.
    • (1999) Nat. Struct. Biol. , vol.6 , pp. 458-463
    • Perrakis, A.1    Morris, R.2    Lamzin, V.S.3
  • 17
    • 84859565085 scopus 로고    scopus 로고
    • Coot News, CCP4 Newsletter, Contribution 7.
    • B. Lohkamp, P. Emsley, K. Cowtan, Coot News, CCP4 Newsletter, 42 (2005) Contribution 7.
    • (2005) , vol.42
    • Lohkamp, B.1    Emsley, P.2    Cowtan, K.3
  • 18
    • 0036118398 scopus 로고    scopus 로고
    • Structure of acetylglutamate kinase, a key enzyme for arginine biosynthesis and a prototype for the amino acid kinase enzyme family, during catalysis
    • Ramón-Maiques S., Marina A., Gil-Ortiz F., Fita I., Rubio V. Structure of acetylglutamate kinase, a key enzyme for arginine biosynthesis and a prototype for the amino acid kinase enzyme family, during catalysis. Structure 2002, 10:329-342.
    • (2002) Structure , vol.10 , pp. 329-342
    • Ramón-Maiques, S.1    Marina, A.2    Gil-Ortiz, F.3    Fita, I.4    Rubio, V.5
  • 20
    • 77954288774 scopus 로고    scopus 로고
    • Dali server: conservation mapping in 3D
    • Holm L., Rosenström P. Dali server: conservation mapping in 3D. Nucleic Acids Res. 2010, 38:W545-W549.
    • (2010) Nucleic Acids Res. , vol.38
    • Holm, L.1    Rosenström, P.2
  • 23
    • 77954759428 scopus 로고    scopus 로고
    • Two crystal structures of Escherichia coli N-acetyl-l-glutamate kinase demonstrate the cycling between open and closed conformations
    • Gil-Ortiz F., Ramón-Maiques S., Fernández-Murga M.L., Fita I., Rubio V. Two crystal structures of Escherichia coli N-acetyl-l-glutamate kinase demonstrate the cycling between open and closed conformations. J. Mol. Biol. 2010, 399:476-490.
    • (2010) J. Mol. Biol. , vol.399 , pp. 476-490
    • Gil-Ortiz, F.1    Ramón-Maiques, S.2    Fernández-Murga, M.L.3    Fita, I.4    Rubio, V.5
  • 24
    • 0034017055 scopus 로고    scopus 로고
    • Factors enhancing protein thermostability
    • Kumar S., Tsai C.-J., Nussinov R. Factors enhancing protein thermostability. Protein Eng. 2000, 13:179-191.
    • (2000) Protein Eng. , vol.13 , pp. 179-191
    • Kumar, S.1    Tsai, C.-J.2    Nussinov, R.3
  • 25
    • 0039116206 scopus 로고    scopus 로고
    • Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: results of a comprehensive survey
    • Szilagyi A., Zavodszky P. Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: results of a comprehensive survey. Structure 2000, 8:493-504.
    • (2000) Structure , vol.8 , pp. 493-504
    • Szilagyi, A.1    Zavodszky, P.2
  • 26
    • 0031860124 scopus 로고    scopus 로고
    • Use of inducible feedback-resistant N-acetylglutamate synthetase (arga) genes for enhanced arginine biosynthesis by genetically engineered Escherichia coli K-12 strains
    • Rajagopal B.S., DePonte J., Tuchman M., Malamy M.H. Use of inducible feedback-resistant N-acetylglutamate synthetase (arga) genes for enhanced arginine biosynthesis by genetically engineered Escherichia coli K-12 strains. Appl. Environ. Microbiol. 1998, 64:1805-1811.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 1805-1811
    • Rajagopal, B.S.1    DePonte, J.2    Tuchman, M.3    Malamy, M.H.4
  • 27
    • 84862756774 scopus 로고    scopus 로고
    • Site-directed mutagenesis and feedback-resistant N-acetyl-l-glutamate kinase (NAGK) increase Corynebacterium crenatum l-arginine production
    • Xu M., Rao Z., Dou W., Yang J., Jin J., Xu Z. Site-directed mutagenesis and feedback-resistant N-acetyl-l-glutamate kinase (NAGK) increase Corynebacterium crenatum l-arginine production. Amino Acids 2011, 10.1007/s00726-011-1069-x.
    • (2011) Amino Acids
    • Xu, M.1    Rao, Z.2    Dou, W.3    Yang, J.4    Jin, J.5    Xu, Z.6
  • 28
    • 33947378256 scopus 로고    scopus 로고
    • Surprising arginine biosynthesis: a reappraisal of the enzymology and evolution of the pathway in microorganisms
    • Xu Y., Labedan B., Glansdorff N. Surprising arginine biosynthesis: a reappraisal of the enzymology and evolution of the pathway in microorganisms. Microbiol. Mol. Biol. Rev. 2007, 71:36-47.
    • (2007) Microbiol. Mol. Biol. Rev. , vol.71 , pp. 36-47
    • Xu, Y.1    Labedan, B.2    Glansdorff, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.