Selective sweeps in growing microbial colonies

Physical Biology

Volumn 9, Issue 2, 2012, Pages

  Korolev, Kirill S ^a,b,e   Müller, Melanie J I ^a,b,c   Karahan, Nilay ^c   Murray, Andrew W ^a,c   Hallatschek, Oskar ^d   Nelson, David R ^a,b,c  

^a HARVARD UNIVERSITY   (United States)

^b HARVARD UNIVERSITY   (United States)

^c HARVARD UNIVERSITY   (United States)

^d MAX PLANCK INSTITUTE FOR DYNAMICS AND SELF ORGANIZATION   (Germany)

^e MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

SACCHAROMYCES CEREVISIAE; SACCHAROMYCETALES;

ARTICLE; BIOLOGICAL MODEL; EVOLUTION; GENETIC SELECTION; GENOTYPE; GROWTH, DEVELOPMENT AND AGING; PHYSIOLOGY; REPRODUCTIVE FITNESS; SACCHAROMYCES CEREVISIAE;

BIOLOGICAL EVOLUTION; GENETIC FITNESS; GENOTYPE; MODELS, BIOLOGICAL; SACCHAROMYCES CEREVISIAE; SELECTION, GENETIC;

EID: 84859574722     PISSN: 14783967     EISSN: 14783975     Source Type: Journal    
DOI: 10.1088/1478-3975/9/2/026008     Document Type: Article

References (37)

1. Darwin C 1859 On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life (New York: New York University Press)
2. Barton N H, Briggs D E G, Eisen J A, Goldstein D B and Patel N H 2007 Evolution (Cold Spring Harbor: Cold Spring Harbor Laboratory Press)
3. Elena S F and Lenski R E 2003 Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation Nature Rev.: Genetics 4 457
4. Ron I G, Golding I, Lifsitz-Mercer B and Ben-Jacob E 2003 Bursts of sectors in expanding bacterial colonies as a possible model for tumor growth and metastases Physica A 320 485
5. Lambert G, Estvez-Salmeron L, Oh S, Liao D, Emerson B M, Tlsty T D and Austin R H 2011 An analogy between the evolution of drug resistance in bacterial communities and malignant tissues Nature Rev. Cancer 11 37582
6. Korolev K S, Avlund M, Hallatschek O and Nelson D R 2010 Genetic demixing and evolution in linear stepping stone models Rev. Mod. Phys. 82 1691718
7. Kerr B, Neuhauser C, Bohannan B J M and Dean A M 2006 Local migration promotes competitive restraint in a hostpathogen tragedy of the commons Nature 442 758 (Pubitemid 44064211)
8. Coberly L C, Wei W, Sampson K Y, Millstein J, Wichman H A and Krone S M 2009 Space, time and host evolution facilitate coexistence of competing bacteriophages: theory and experiment Am. Nat. 173 121
9. Hauert C and Doebeli M 2004 Spatial structure often inhibits the evolution of cooperation in the snowdrift game Nature 428 6436 (Pubitemid 38524804)
10. Rainey P B and Travisano M 1977 Adaptive radiation in a heterogeneous environment Phil. Trans. R. Soc. B 280 29101
11. Wakita J, Komatsu K, Nakahara A, Matsuyama T and Matsushita M 1994 Experimental investigation on the validity of population dynamics approach to bacterial colony formation J. Phys. Soc. Japan 63 120511
12. Ben-Jacob E, Schochet O, Tenenbaum A, Cohen I, Czirók A and Vicsek T 1994 Generic modelling of cooperative growth patterns in bacterial colonies Nature 368 469
13. Ben-Jacob E, Cohen I, Shochet O, Aranson I, Levine H and Tsimring L 1995 Complex bacterial patterns Nature 373 5667
14. Golding I, Cohen I and Ben-Jacob E 1999 Studies of sector formation in expanding bacterial colonies Europhys. Lett. 48 587
15. Hallatschek O, Hersen P, Ramanathan S and Nelson D R 2007 Genetic drift at expanding frontiers promotes gene segregation Proc. Natl Acad. Sci. USA 104 19926
16. BeEr A, Zhang H P, Florin E L, Payne S M, Ben-Jacob E and Swinney H L 2009 Deadly competition between sibling bacterial colonies Proc. Natl Acad. Sci. 106 428
17. Korolev K S, Xavier J B, Nelson D R and Foster K R 2011 A quantitative test of population genetics using spatio-genetic patterns in bacterial colonies Am. Nat. 178 538
18. Kerr B, Riley M A, Feldman M W and Bohannan B J M 2002 Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors Nature 418 1714 (Pubitemid 34773769)
19. Habets M G J L, Rozen D E, Hoekstra R F and de Visser J A G M 2006 The effect of population structure on the adaptive radiation of microbial populations evolving in spatially structured environments Ecol. Lett. 9 10418 (Pubitemid 44267787)
20. Harcombe W 2010 Novel cooperation experimentally evolved between species Evolution 64 216672
21. Saxer G, Doebeli M and Travisano M 2009 Spatial structure leads to ecological breakdown and loss of diversity Proc. R. Soc. B: Biol. Sci. 276 206570
22. Velicer G J and Yu Y T N 2003 Evolution of novel cooperative swarming in the bacterium Myxococcus xanthus Nature 425 758 (Pubitemid 37101719)
23. Ben-Jacob E, Cohen I and Levine H 2000 Cooperative self-organization of microorganisms Adv. Phys. 49 395554 (Pubitemid 35381839)
24. Hallatschek O and Nelson D R 2010 Life at the front of an expanding population Evolution 64 193
25. Hallatschek O 2011 The noisy edge of traveling waves Proc. Natl Acad. Sci. USA 108 17837
26. Kessler D A and Levine H 1998 Fluctuation-induced diffusive instabilities Nature 394 556
27. Pipe L Z and Grimson M J 2008 Spatial-temporal modelling of bacterial colony growth on solid media Mol. BioSyst. 4 1928
28. Nadell C D, Foster K R and Xavier J B 2010 Emergence of spatial structure in cell groups and the evolution of cooperation PLoS Comput. Biol. 6 e1000716
29. Murray J D 2003 Mathematical Biology (Berlin: Springer)
30. Pearl R 1927 The growth of populations Q. Rev. Biol. 2 53248
31. Carlson T 1913 Über Geschwindigkeit und Grösse der Hefevermehrung in Würze Biochem. Z 57 31334
32. Nguyen B, Upadhyaya A, Van Oudenaarden A and Brenner M P 2004 Elastic instability in growing yeast colonies Biophys. J. 86 27407 (Pubitemid 38552680)
33. Fisher R A 1937 The wave of advance of advantageous genes Ann. Eugenics 7 353
34. Kolmogorov A N, Petrovsky N and Piscounov N S 1937 A study of the equation of diffusion with increase in the quantity of matter and its application to a biological problem Moscow Univ. Bull. Math. 1 1
35. Hallatschek O and Korolev K S 2009 Fisher waves in the strong noise limit Phys. Rev. Lett. 103 108103
36. Born M, Wolf E and Bhatia A B 1964 Principles of Optics (Oxford: Pergamon)
37. Cook T A 1985 The Curves of Life (London: Dover)