The WAVY GROWTH 3 E3 ligase family controls the gravitropic response in Arabidopsis roots

Plant Journal

Volumn 70, Issue 2, 2012, Pages 303-314

  Sakai, Tatsuya ^a,b   Mochizuki, Susumu ^b,e   Haga, Ken ^a   Uehara, Yukiko ^b   Suzuki, Akane ^b   Harada, Akiko ^b,f   Wada, Takuji ^b   Ishiguro, Sumie ^c   Okada, Kiyotaka ^d  

^a NIIGATA UNIVERSITY   (Japan)

^b RIKEN   (Japan)

^c NAGOYA UNIVERSITY   (Japan)

^d NATIONAL INSTITUTE FOR BASIC BIOLOGY   (Japan)

^e NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^f OSAKA MEDICAL COLLEGE   (Japan)

Author keywords

Auxin; E3 ligase; gravitropism; RING finger protein; root; WAV3

Indexed keywords

AUXIN; E3 LIGASE; GRAVITROPISMS; ROOT; WAV3;

ALGAE; GENES; POLYSACCHARIDES;

PROTEINS;

ARABIDOPSIS PROTEIN; GREEN FLUORESCENT PROTEIN; MEMBRANE PROTEIN; PLANT DNA; UBIQUITIN PROTEIN LIGASE; WAV2 PROTEIN, ARABIDOPSIS; WAV3 PROTEIN, ARABIDOPSIS;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; CHEMISTRY; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETICS; GRAVITROPISM; GROWTH, DEVELOPMENT AND AGING; IMMUNOBLOTTING; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; PLANT ROOT; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; TRANSGENIC PLANT;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CLONING, MOLECULAR; DNA, PLANT; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; GRAVITROPISM; GREEN FLUORESCENT PROTEINS; IMMUNOBLOTTING; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; MUTATION; PLANT ROOTS; PLANTS, GENETICALLY MODIFIED; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; UBIQUITIN-PROTEIN LIGASES;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 84859482539     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2011.04870.x     Document Type: Article

References (37)

1. Abas, L., Benjamins, R., Malenica, N., Paciorek, T., Wiśniewska, J., Moulinier-Anzola, J.C., Sieberer, T., Friml, J., and, Luschnig, C., (2006) Intracellular trafficking and proteolysis of the Arabidopsis auxin-efflux facilitator PIN2 are involved in root gravitropism. Nat. Cell Biol. 8, 249-256. (Pubitemid 43336066)
2. Alonso, J.M., Stepanova, A.N., Leisse, T.J., et al. (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science, 301, 653-657. (Pubitemid 36927950)
3. Bennett, M.J., Marchant, A., Green, H.G., May, S.T., Ward, S.P., Millner, P.A., Walker, A.R., Schultz, B., and, Feldmann, K.A., (1996) Arabidopsis AUX1 gene: a permease-like regulator of root gravitropism. Science, 273, 948-950. (Pubitemid 26275169)
4. Buer, C.S., Wasteneys, G.O., and, Masle, J., (2003) Ethylene modulates root-wave responses in Arabidopsis. Plant Physiol. 132, 1085-1096. (Pubitemid 36715105)
5. Chen, R., Hilson, P., Sedbrook, J., Rosen, E., Caspar, T., and, Masson, P.H., (1998) The Arabidopsis thaliana AGRAVITROPIC1 gene encodes a component of the polar-auxin-transport efflux carrier. Proc. Natl Acad. Sci. USA, 95, 15112-15117. (Pubitemid 29003765)
6. Clough, S., and, Bent, A.F., (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
7. Eapen, D., Barroso, M.L., Campos, M.E., Ponce, G., Corkidi, G., Dubrovsky, J.G., and, Cassab, G.I., (2003) A no hydrotropic response root mutant that responds positively to gravitropism in Arabidopsis. Plant Physiol. 131, 536-546. (Pubitemid 36219516)
8. Esmon, C.A., Pedmale, U.V., and, Liscum, E., (2005) Plant tropisms: providing the power of movement to a sessile organism. Int. J. Dev. Biol. 49, 665-674. (Pubitemid 41615618)
9. Friml, J., Vieten, A., Sauer, M., Weijers, D., Schwarz, H., Hamann, T., Offringa, R., and, Jürgens, G., (2003) Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis. Nature, 426, 147-153. (Pubitemid 37442576)
10. Hajdukiewicz, P., Svab, Z., and, Maliga, P., (1994) The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation. Plant Mol. Biol. 25, 989-994. (Pubitemid 2152867)
11. Hashimoto, T., (2002) Molecular genetic analysis of left-right handedness in plants. Philos. Trans. R. Soc. Lond B Biol. Sci. 357, 799-808. (Pubitemid 34735687)
12. Hashizume, R., Fukuda, M., Maeda, I., Nishikawa, H., Oyake, D., Yabuki, Y., Ogata, H., and, Ohta, T., (2001) The RING heterodimer BRCA1-BARD1 is a ubiquitin ligase inactivated by a breast cancer-derived mutation. J. Biol. Chem. 276, 14537-14540.
13. Huala, E., Oeller, P.W., Liscum, E., Han, I.S., Larsen, E., and, Briggs, W.R., (1997) Arabidopsis NPH1: a protein kinase with a putative redox-sensing domain. Science, 278, 2120-2123. (Pubitemid 28028321)
14. Inada, S., Ohgishi, M., Mayama, T., Okada, K., and, Sakai, T., (2004) RPT2 is a signal transducer involved in phototropic response and stomatal opening by association with phototropin 1 in Arabidopsis thaliana. Plant Cell, 16, 887-896. (Pubitemid 38459209)
15. Jander, G., Norris, S.R., Rounsley, S.D., Bush, D.F., Levin, I.M., and, Last, R.L., (2002) Arabidopsis map-based cloning in the post-genome era. Plant Physiol. 129, 440-450. (Pubitemid 34689134)
16. Kiss, J.Z., Hertel, R., and, Sack, F.D., (1989) Amyloplasts are necessary for full gravitropic sensitivity in roots of Arabidopsis thaliana. Planta, 177, 198-206.
17. Kobayashi, A., Takahashi, A., Kakimoto, Y., Miyazawa, Y., Fujii, N., Higashitani, A., and, Takahashi, H., (2007) A gene essential for hydrotropism in roots. Proc. Natl Acad. Sci. USA, 104, 4724-4729. (Pubitemid 47186292)
18. Luschnig, C., Gaxiola, R.A., Grisafi, P., and, Fink, G.R., (1998) EIR1, a root-specific protein involved in auxin transport, is required for gravitropism in Arabidopsis thaliana. Genes Dev. 12, 2175-2187. (Pubitemid 28348041)
19. Migliaccio, F., Fortunati, A., and, Tassone, P., (2009) Arabidopsis root growth movements and their symmetry. Plant Signal. Behav. 4, 183-190.
20. Mochizuki, S., Harada, A., Inada, S., Sugimoto-Shirasu, K., Stacey, N., Wada, T., Ishiguro, S., Okada, K., and, Sakai, T., (2005) The Arabidopsis WAVY GROWTH 2 protein modulates root bending in response to environmental stimuli. Plant Cell, 17, 537-547. (Pubitemid 41672973)
21. Müller, A., Guan, C., Galweiler, L., Tanzler, P., Huijser, P., Marchant, A., Parry, G., Bennett, M., Wisman, E., and, Palme, K., (1998) AtPIN2 defines a locus of Arabidopsis for root gravitropism control. EMBO J. 17, 6903-6911. (Pubitemid 28550284)
22. Okada, K., and, Shimura, Y., (1990) Reversible root tip rotation in Arabidopsis seedlings induced by obstacle-touching stimulus. Science, 250, 274-276.
23. Okada, K., and, Shimura, Y., (1992) Mutational analysis of root gravitropism and phototropism of Arabidopsis thaliana seedlings. Aust. J. Plant Physiol. 19, 439-448.
24. Okada, K., and, Shimura, Y., (1994) Modulation of root growth by physical stimuli. In Arabidopsis (, Meyerowitz, E.M., and, Somerville, C.R., eds). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, pp. 665-684.
25. Oyama, T., Shimura, Y., and, Okada, K., (1997) The Arabidopsis HY5 gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl. Genes Dev. 11, 2983-2995. (Pubitemid 27508509)
26. Pagnussat, G.C., Yu, H.J., Ngo, Q.A., Rajani, S., Mayalagu, S., Johnson, C.S., Capron, A., Xie, L.F., Ye, D., and, Sundaresan, V., (2005) Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Development, 132, 603-614. (Pubitemid 40277699)
27. Philosoph-Hadas, S., Friedmana, H., and, Meira, S., (2005) Gravitropic bending and plant hormones. Vitam. Horm. 72, 31-78. (Pubitemid 43589041)
28. Sakai, T., van der Honing, H., Nishioka, M., et al. (2008) Armadillo repeat-containing kinesins and a NIMA-related kinase are required for epidermal cell morphogenesis in Arabidopsis. Plant J. 53, 157-171. (Pubitemid 350265247)
29. Schultz, J., Milpetz, F., Bork, P., and, Ponting, C.P., (1998) SMART, a simple modular architecture research tool: identification of signaling domains. Proc. Natl Acad. Sci. USA, 95, 5857-5864. (Pubitemid 28248931)
30. Seki, M., Narusaka, M., Kamiya, A., et al. (2002) Functional annotation of a full-length Arabidopsis cDNA collection. Science, 296, 141-145. (Pubitemid 34280073)
31. Stone, S.L., Hauksdóttir, H., Troy, A., Herschleb, J., Kraft, E., and, Callis, J., (2005) Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. Plant Physiol. 137, 13-30. (Pubitemid 43034286)
32. Takahashi, N., Goto, N., Okada, K., and, Takahashi, H., (2002) Hydrotropism in abscisic acid, wavy, and gravitropic mutants of Arabidopsis thaliana. Planta, 216, 203-211. (Pubitemid 36761778)
33. Thompson, M.V., and, Holbrook, N.M., (2004) Root-gel interactions and the root waving behavior of Arabidopsis. Plant Physiol. 135, 1822-1837. (Pubitemid 39009422)
34. Whittaker, C.A., and, Hynes, R.O., (2002) Distribution and evolution of von Willebrand/integrin A domains: widely dispersed domains with roles in cell adhesion and elsewhere. Mol. Biol. Cell, 13, 3369-3387. (Pubitemid 35191361)
35. Xie, Q., Guo, H.-S., Dallman, G., Fang, S., Weissman, A.M., and, Chua, N.-H., (2002) SINAT5 promotes ubiquitin-related degradation of NAC1 to attenuate auxin signals. Nature, 419, 167-170. (Pubitemid 35025444)
36. Xie, Y., Kerscher, O., Kroetz, M.B., McConchie, H.F., Sung, P., and, Hochstrasser, M., (2007) The yeast Hex3·Slx8 heterodimer is a ubiquitin ligase stimulated by substrate sumoylation. J Biol Chem. 282, 34176-34184. (Pubitemid 350159438)
37. Yuen, C.Y.L., Sedbrook, J.C., Perrin, R.M., Carroll, K.L., and, Masson, P.H., (2005) Loss-of-function mutations of ROOT HAIR DEFECTIVE3 suppress root waving, skewing, and epidermal cell file rotation in Arabidopsis. Plant Physiol. 138, 701-714. (Pubitemid 43793152)