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Volumn 14, Issue 4, 2012, Pages 1077-1087

The microbial ecology of anaerobic cellulose degradation in municipal waste landfill sites: Evidence of a role for fibrobacters

Author keywords

[No Author keywords available]

Indexed keywords

CELLULOSE; PRIMER DNA; RNA 16S;

EID: 84859430680     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2011.02688.x     Document Type: Article
Times cited : (48)

References (29)
  • 1
    • 0141466697 scopus 로고    scopus 로고
    • Microbiology of solid waste landfills
    • Palmisano, A.C., and Barlaz, M.A. (eds). Florida, USA: CRC press
    • Barlaz, M.A. (1996) Microbiology of solid waste landfills. In Microbiology of Solid Waste. Palmisano, A.C., and Barlaz, M.A. (eds). Florida, USA: CRC press, pp. 31-70.
    • (1996) Microbiology of Solid Waste , pp. 31-70
    • Barlaz, M.A.1
  • 2
    • 0002789270 scopus 로고    scopus 로고
    • Microbial studies of landfills and anaerobic refuse decomposition
    • Hurst, J., Knudsen, G.R., McInerney, M.J., Stetzenbach, L.D., and Walter, M.V. (eds). Washington DC, USA: American Society for Microbiology
    • Barlaz, M.A. (1997) Microbial studies of landfills and anaerobic refuse decomposition. In Manual for Environmental Microbiology. Hurst, J., Knudsen, G.R., McInerney, M.J., Stetzenbach, L.D., and Walter, M.V. (eds). Washington DC, USA: American Society for Microbiology, pp. 541-557.
    • (1997) Manual for Environmental Microbiology , pp. 541-557
    • Barlaz, M.A.1
  • 3
    • 0002888557 scopus 로고
    • Bacterial population development and chemical characteristics of refuse decomposition in a simulated sanitary landfill
    • Barlaz, M.A., Schaefer, D.M., and Ham, R.K. (1989) Bacterial population development and chemical characteristics of refuse decomposition in a simulated sanitary landfill. Appl Environ Microbiol 55: 55-65.
    • (1989) Appl Environ Microbiol , vol.55 , pp. 55-65
    • Barlaz, M.A.1    Schaefer, D.M.2    Ham, R.K.3
  • 4
    • 0022512490 scopus 로고
    • Ultrastructure of the cell-surface cellulosome of Clostridium thermocellum and its interaction with cellulose
    • Bayer, E.A., and Lamed, R. (1986) Ultrastructure of the cell-surface cellulosome of Clostridium thermocellum and its interaction with cellulose. J Bacteriol 167: 828-836.
    • (1986) J Bacteriol , vol.167 , pp. 828-836
    • Bayer, E.A.1    Lamed, R.2
  • 5
    • 16544365966 scopus 로고    scopus 로고
    • Identification, detection, and spatial resolution of Clostridium populations responsible for cellulose degradation in a methanogenic landfill leachate bioreactor
    • Burrell, P.C., O'Sullivan, C., Song, H., Clarke, W.P., and Blackall, L.L. (2004) Identification, detection, and spatial resolution of Clostridium populations responsible for cellulose degradation in a methanogenic landfill leachate bioreactor. Appl Environ Microbiol 70: 2414-2419.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 2414-2419
    • Burrell, P.C.1    O'Sullivan, C.2    Song, H.3    Clarke, W.P.4    Blackall, L.L.5
  • 7
    • 0024444791 scopus 로고
    • Isolation and direct complete nucleotide determination of entire genes - characterization of a gene coding for 16S-ribosomal RNA
    • Edwards, U., Rogall, T., Blocker, H., Emde, M., and Bottger, E.C. (1989) Isolation and direct complete nucleotide determination of entire genes - characterization of a gene coding for 16S-ribosomal RNA. Nucleic Acids Res 17: 7843-7853.
    • (1989) Nucleic Acids Res , vol.17 , pp. 7843-7853
    • Edwards, U.1    Rogall, T.2    Blocker, H.3    Emde, M.4    Bottger, E.C.5
  • 8
    • 41349093562 scopus 로고    scopus 로고
    • Plant cell wall breakdown by anaerobic microorganisms from the mammalian digestive tract
    • Flint, H.J., and Bayer, E.A. (2008) Plant cell wall breakdown by anaerobic microorganisms from the mammalian digestive tract. Ann NY Acad Sci 1125: 280-288.
    • (2008) Ann NY Acad Sci , vol.1125 , pp. 280-288
    • Flint, H.J.1    Bayer, E.A.2
  • 9
    • 0031692488 scopus 로고    scopus 로고
    • Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes
    • Franks, A.H., Harmsen, H.J.M., Raangs, G.C., Jansen, G.J., Schut, F., and Welling, G.W. (1998) Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes. Appl Environ Microbiol 64: 3336-3345.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3336-3345
    • Franks, A.H.1    Harmsen, H.J.M.2    Raangs, G.C.3    Jansen, G.J.4    Schut, F.5    Welling, G.W.6
  • 10
    • 0034468557 scopus 로고    scopus 로고
    • Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
    • Griffiths, R.I., Whiteley, A.S., O'Donnell, A.G., and Bailey, M.J. (2000) Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl Environ Microbiol 66: 5488-5491.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5488-5491
    • Griffiths, R.I.1    Whiteley, A.S.2    O'Donnell, A.G.3    Bailey, M.J.4
  • 11
    • 8144228571 scopus 로고    scopus 로고
    • Phylogenetic diversity of bacteria in the leachate of a full-scale recirculating landfill
    • Huang, L.N., Zhou, H., Zhu, S., and Qu, L.H. (2004) Phylogenetic diversity of bacteria in the leachate of a full-scale recirculating landfill. FEMS Microbiol Ecol 50: 175-183.
    • (2004) FEMS Microbiol Ecol , vol.50 , pp. 175-183
    • Huang, L.N.1    Zhou, H.2    Zhu, S.3    Qu, L.H.4
  • 12
    • 11144254515 scopus 로고    scopus 로고
    • Molecular phylogenetic diversity of bacteria associated with the leachate of a closed municipal solid waste landfill
    • Huang, L.N., Zhu, S., Zhou, H., and Qu, L.H. (2005) Molecular phylogenetic diversity of bacteria associated with the leachate of a closed municipal solid waste landfill. FEMS Microbiol Lett 242: 297-303.
    • (2005) FEMS Microbiol Lett , vol.242 , pp. 297-303
    • Huang, L.N.1    Zhu, S.2    Zhou, H.3    Qu, L.H.4
  • 13
    • 48249114783 scopus 로고    scopus 로고
    • Ecological and physiological characterization shows that Fibrobacter succinogenes is important in rumen fiber digestion - review
    • Kobayashi, Y., Shinkai, T., and Koike, S. (2008) Ecological and physiological characterization shows that Fibrobacter succinogenes is important in rumen fiber digestion - review. Folia Microbiol 53: 195-200.
    • (2008) Folia Microbiol , vol.53 , pp. 195-200
    • Kobayashi, Y.1    Shinkai, T.2    Koike, S.3
  • 14
    • 63849266008 scopus 로고    scopus 로고
    • Insights into networks of functional microbes catalysing methanization of cellulose under mesophilic conditions
    • Li, T.L., Mazeas, L., Sghir, A., Leblon, G., and Bouchez, T. (2009) Insights into networks of functional microbes catalysing methanization of cellulose under mesophilic conditions. Environ Microbiol 11: 889-904.
    • (2009) Environ Microbiol , vol.11 , pp. 889-904
    • Li, T.L.1    Mazeas, L.2    Sghir, A.3    Leblon, G.4    Bouchez, T.5
  • 15
    • 41349123279 scopus 로고    scopus 로고
    • The cellulase/hemicellulase system of the anaerobic fungus Orpinomyces PC-2 and aspects of its applied use
    • Ljungdahl, L.G. (2008) The cellulase/hemicellulase system of the anaerobic fungus Orpinomyces PC-2 and aspects of its applied use. Ann NY Acad Sci 1125: 308-321.
    • (2008) Ann NY Acad Sci , vol.1125 , pp. 308-321
    • Ljungdahl, L.G.1
  • 16
    • 33747360175 scopus 로고    scopus 로고
    • Molecular biological detection of anaerobic gut fungi (Neocallimastigales) from landfill sites
    • Lockhart, R.J., Van Dyke, M.I., Beadle, I.R., Humphreys, P., and McCarthy, A.J. (2006) Molecular biological detection of anaerobic gut fungi (Neocallimastigales) from landfill sites. Appl Environ Microbiol 72: 5659-5661.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5659-5661
    • Lockhart, R.J.1    Van Dyke, M.I.2    Beadle, I.R.3    Humphreys, P.4    McCarthy, A.J.5
  • 17
    • 41849146389 scopus 로고    scopus 로고
    • Detection of novel Fibrobacter populations in landfill sites and determination of their relative abundance via quantitative PCR
    • McDonald, J.E., Lockhart, R.J., Cox, M.J., Allison, H.E., and McCarthy, A.J. (2008) Detection of novel Fibrobacter populations in landfill sites and determination of their relative abundance via quantitative PCR. Environ Microbiol 10: 1310-1319.
    • (2008) Environ Microbiol , vol.10 , pp. 1310-1319
    • McDonald, J.E.1    Lockhart, R.J.2    Cox, M.J.3    Allison, H.E.4    McCarthy, A.J.5
  • 18
    • 67651244498 scopus 로고    scopus 로고
    • Molecular biological detection and quantification of novel Fibrobacter populations in freshwater lakes
    • McDonald, J.E., de Menezes, A.B., Allison, H.E., and McCarthy, A.J. (2009) Molecular biological detection and quantification of novel Fibrobacter populations in freshwater lakes. Appl Environ Microbiol 75: 5148-5152.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5148-5152
    • McDonald, J.E.1    de Menezes, A.B.2    Allison, H.E.3    McCarthy, A.J.4
  • 19
    • 76649113399 scopus 로고    scopus 로고
    • Composition of the landfill microbial community determined by application of domain and group-specific 16S and 18S rRNA-targeted oligonucleotide probes
    • McDonald, J.E., Allison, H.E., and McCarthy, A.J. (2010) Composition of the landfill microbial community determined by application of domain and group-specific 16S and 18S rRNA-targeted oligonucleotide probes. Appl Environ Microbiol 76: 1301-1306.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 1301-1306
    • McDonald, J.E.1    Allison, H.E.2    McCarthy, A.J.3
  • 20
    • 0027201150 scopus 로고
    • Digestion of structural polysaccharides of Panicum and vetch hays by the rumen bacterial strains Fibrobacter succinogenes BL2 and Butyrivibrio fibrisolvens D1
    • Miron, J., and Benghedalia, D. (1993) Digestion of structural polysaccharides of Panicum and vetch hays by the rumen bacterial strains Fibrobacter succinogenes BL2 and Butyrivibrio fibrisolvens D1. Appl Microbiol Biotechnol 39: 756-759.
    • (1993) Appl Microbiol Biotechnol , vol.39 , pp. 756-759
    • Miron, J.1    Benghedalia, D.2
  • 21
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl, M.W. (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29: 2002-2007.
    • (2001) Nucleic Acids Res , vol.29 , pp. 2002-2007
    • Pfaffl, M.W.1
  • 22
    • 2342555069 scopus 로고    scopus 로고
    • Development of a real-time PCR method for quantification of the three genera Dehalobacter, Dehalococcoides, and Desulfitobacterium in microbial communities
    • Smits, T.H.M., Devenoges, C., Szynalski, K., Maillard, J., and Holliger, C. (2004) Development of a real-time PCR method for quantification of the three genera Dehalobacter, Dehalococcoides, and Desulfitobacterium in microbial communities. J Microbiol Methods 57: 369-378.
    • (2004) J Microbiol Methods , vol.57 , pp. 369-378
    • Smits, T.H.M.1    Devenoges, C.2    Szynalski, K.3    Maillard, J.4    Holliger, C.5
  • 24
    • 0033760479 scopus 로고    scopus 로고
    • Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays
    • Suzuki, M.T., Taylor, L.T., and DeLong, E.F. (2000) Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays. Appl Environ Microbiol 66: 4605-4614.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4605-4614
    • Suzuki, M.T.1    Taylor, L.T.2    DeLong, E.F.3
  • 25
    • 0035374841 scopus 로고    scopus 로고
    • Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR
    • Tajima, K., Aminov, R.I., Nagamine, T., Matsui, H., Nakamura, M., and Benno, Y. (2001) Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR. Appl Environ Microbiol 67: 2766-2774.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2766-2774
    • Tajima, K.1    Aminov, R.I.2    Nagamine, T.3    Matsui, H.4    Nakamura, M.5    Benno, Y.6
  • 26
    • 0036204961 scopus 로고    scopus 로고
    • Molecular biological detection and characterization of Clostridium populations in municipal landfill sites
    • Van Dyke, M.I., and McCarthy, A.J. (2002) Molecular biological detection and characterization of Clostridium populations in municipal landfill sites. Appl Environ Microbiol 68: 2049-2053.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 2049-2053
    • Van Dyke, M.I.1    McCarthy, A.J.2
  • 28
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis, M., Gelfand, D.H., Sninsky, J.J., and White, T.J. (eds). San Diego, CA, USA: Academic Press
    • White, T.J., Burns, T., Lee, S., and Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols. Innis, M., Gelfand, D.H., Sninsky, J.J., and White, T.J. (eds). San Diego, CA, USA: Academic Press, pp. 315-322.
    • (1990) PCR Protocols , pp. 315-322
    • White, T.J.1    Burns, T.2    Lee, S.3    Taylor, J.4
  • 29
    • 0029859948 scopus 로고    scopus 로고
    • Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies
    • Zheng, D.D., Alm, E.W., Stahl, D.A., and Raskin, L. (1996) Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies. Appl Environ Microbiol 62: 4504-4513.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 4504-4513
    • Zheng, D.D.1    Alm, E.W.2    Stahl, D.A.3    Raskin, L.4


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