-
1
-
-
0347444723
-
MicroRNAs: Genomics, Biogenesis, Mechanism, and Function
-
DOI 10.1016/S0092-8674(04)00045-5
-
DP Bartel 2004 MicroRNAs: Genomics, biogenesis, mechanism, and function Cell 116 281 297 10.1016/S0092-8674(04)00045-5 1:CAS:528:DC%2BD2cXhtVals7o%3D (Pubitemid 38167318)
-
(2004)
Cell
, vol.116
, Issue.2
, pp. 281-297
-
-
Bartel, D.P.1
-
2
-
-
1942435249
-
Micromanagers of gene expression: The potentially widespread influence of metazoan microRNAs
-
DP Bartel CZ Chen 2004 Micromanagers of gene expression: The potentially widespread influence of metazoan microRNAs Nat Rev Genet 5 396 400 10.1038/nrg1328 1:CAS:528:DC%2BD2cXjsl2hsr0%3D (Pubitemid 38529411)
-
(2004)
Nature Reviews Genetics
, vol.5
, Issue.5
, pp. 396-400
-
-
Bartel, D.P.1
Chen, C.-Z.2
-
3
-
-
33748587841
-
A Pattern-Based Method for the Identification of MicroRNA Binding Sites and Their Corresponding Heteroduplexes
-
DOI 10.1016/j.cell.2006.07.031, PII S0092867406010993
-
KC Miranda T Huynh Y Tay YS Ang WL Tam, et al. 2006 A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes Cell 126 1203 1217 10.1016/j.cell.2006.07.031 1:CAS:528:DC%2BD28XhtVCnsrvI (Pubitemid 44380294)
-
(2006)
Cell
, vol.126
, Issue.6
, pp. 1203-1217
-
-
Miranda, K.C.1
Huynh, T.2
Tay, Y.3
Ang, Y.-S.4
Tam, W.-L.5
Thomson, A.M.6
Lim, B.7
Rigoutsos, I.8
-
4
-
-
68949115601
-
Biochemical evidence for translational repression by Arabidopsis microRNAs
-
10.1105/tpc.108.063412 1:CAS:528:DC%2BD1MXpvFOks70%3D
-
E Lanet E Delannoy R Sormani M Floris P Brodersen, et al. 2009 Biochemical evidence for translational repression by Arabidopsis microRNAs Plant Cell 21 1762 10.1105/tpc.108.063412 1:CAS:528:DC%2BD1MXpvFOks70%3D
-
(2009)
Plant Cell
, vol.21
, pp. 1762
-
-
Lanet, E.1
Delannoy, E.2
Sormani, R.3
Floris, M.4
Brodersen, P.5
-
5
-
-
45849122499
-
Widespread translational inhibition by plant miRNAs and siRNAs
-
DOI 10.1126/science.1159151
-
P Brodersen L Sakvarelidze-Achard M Bruun-Rasmussen P Dunoyer YY Yamamoto, et al. 2008 Widespread translational inhibition by plant miRNAs and siRNAs Science 320 1185 10.1126/science.1159151 1:CAS:528:DC%2BD1cXmt1Ois74%3D (Pubitemid 351929501)
-
(2008)
Science
, vol.320
, Issue.5880
, pp. 1185-1190
-
-
Brodersen, P.1
Sakvarelidze-Achard, L.2
Bruun-Rasmussen, M.3
Dunoyer, P.4
Yamamoto, Y.Y.5
Sieburth, L.6
Voinnet, O.7
-
6
-
-
13944263944
-
The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis
-
DOI 10.1016/j.cub.2005.02.017
-
CC Baker P Sieber F Wellmer EM Meyerowitz 2005 The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis Current Biology 15 303 315 10.1016/j.cub.2005.02.017 1:CAS:528:DC%2BD2MXhsFSiu7s%3D (Pubitemid 40263362)
-
(2005)
Current Biology
, vol.15
, Issue.4
, pp. 303-315
-
-
Baker, C.C.1
Sieber, P.2
Wellmer, F.3
Meyerowitz, E.M.4
-
7
-
-
24944510549
-
MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development
-
DOI 10.1105/tpc.105.030841
-
HS Guo Q Xie JF Fei NH Chua 2005 MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development Plant Cell 17 1376 1386 10.1105/tpc.105.030841 1:CAS:528:DC%2BD2MXksVKksrk%3D (Pubitemid 43138191)
-
(2005)
Plant Cell
, vol.17
, Issue.5
, pp. 1376-1386
-
-
Guo, H.-S.1
Xie, Q.2
Fei, J.-F.3
Chua, N.-H.4
-
8
-
-
1842484780
-
Ancient microRNA target sequences in plants
-
DOI 10.1038/428485a
-
SK Floyd JL Bowman 2004 Gene regulation: Ancient microRNA target sequences in plants Nature 428 485 486 10.1038/428485a 1:CAS:528: DC%2BD2cXis1Gksr0%3D (Pubitemid 38480526)
-
(2004)
Nature
, vol.428
, Issue.6982
, pp. 485-486
-
-
Floyd, S.K.1
Bowman, J.L.2
-
9
-
-
1642366133
-
A MicroRNA as a Translational Repressor of APETALA2 in Arabidopsis Flower Development
-
DOI 10.1126/science.1088060
-
X Chen 2004 A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development Science 303 2022 2025 10.1126/science.1088060 1:CAS:528:DC%2BD2cXisVGlt7g%3D (Pubitemid 38393278)
-
(2004)
Science
, vol.303
, Issue.5666
, pp. 2022-2025
-
-
Chen, X.1
-
10
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
DOI 10.1016/0092-8674(93)90529-Y
-
RC Lee RL Feinbaum V Ambros 1993 The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14 Cell 75 843 854 10.1016/0092-8674(93)90529-Y 1:CAS:528:DyaK2cXpslGqtA%3D%3D (Pubitemid 24014542)
-
(1993)
Cell
, vol.75
, Issue.5
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
11
-
-
0034708122
-
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
-
DOI 10.1038/35002607
-
BJ Reinhart FJ Slack M Basson AE Pasquinelli JC Bettinger, et al. 2000 The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans Nature 403 901 906 10.1038/35002607 1:CAS:528:DC%2BD3cXhs1Ors74%3D (Pubitemid 30130993)
-
(2000)
Nature
, vol.403
, Issue.6772
, pp. 901-906
-
-
Reinhart, B.J.1
Slack, F.J.2
Basson, M.3
Pasquienelll, A.E.4
Bettlnger, J.C.5
Rougvle, A.E.6
Horvitz, H.R.7
Ruvkun, G.8
-
12
-
-
33750373240
-
Temporal regulation of shoot development in Arabidopsis thaliana by miRr156 and its target SPL3
-
DOI 10.1242/dev.02521
-
G Wu RS Poethig 2006 Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3 Development 133 3539 10.1242/dev.02521 1:CAS:528:DC%2BD28XhtFels73M (Pubitemid 44614278)
-
(2006)
Development
, vol.133
, Issue.18
, pp. 3539-3547
-
-
Wu, G.1
Poethig, R.S.2
-
13
-
-
68749100821
-
The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis
-
10.1016/j.cell.2009.06.031 1:CAS:528:DC%2BD1MXhsVCjs7rK
-
G Wu MY Park SR Conway JW Wang D Weigel, et al. 2009 The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis Cell 138 750 759 10.1016/j.cell.2009.06.031 1:CAS:528:DC%2BD1MXhsVCjs7rK
-
(2009)
Cell
, vol.138
, pp. 750-759
-
-
Wu, G.1
Park, M.Y.2
Conway, S.R.3
Wang, J.W.4
Weigel, D.5
-
14
-
-
54949093292
-
Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana
-
DOI 10.1105/tpc.108.058180
-
JW Wang R Schwab B Czech E Mica D Weigel 2008 Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana Plant Cell 20 1231 1243 10.1105/tpc.108.058180 1:CAS:528:DC%2BD1cXotlyrt74%3D (Pubitemid 352844179)
-
(2008)
Plant Cell
, vol.20
, Issue.5
, pp. 1231-1243
-
-
Wang, J.-W.1
Schwab, R.2
Czech, B.3
Mica, E.4
Weigel, D.5
-
15
-
-
68749095252
-
MiR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana
-
10.1016/j.cell.2009.06.014 1:CAS:528:DC%2BD1MXhsVCjs7rJ
-
JW Wang B Czech D Weigel 2009 miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana Cell 138 738 749 10.1016/j.cell.2009.06.014 1:CAS:528:DC%2BD1MXhsVCjs7rJ
-
(2009)
Cell
, vol.138
, pp. 738-749
-
-
Wang, J.W.1
Czech, B.2
Weigel, D.3
-
16
-
-
36549014611
-
The maize tasselseed4 microRNA controls sex determination and meristem cell fate by targeting Tasselseed6/indeterminate spikelet1
-
DOI 10.1038/ng.2007.20, PII NG200720
-
G Chuck R Meeley E Irish H Sakai S Hake 2007 The maize tasselseed4 microRNA controls sex determination and meristem cell fate by targeting Tasselseed6/indeterminate spikelet1 Nature Genetics 39 1517 1521 10.1038/ng.2007.20 1:CAS:528:DC%2BD2sXhtlKmtLrP (Pubitemid 350191340)
-
(2007)
Nature Genetics
, vol.39
, Issue.12
, pp. 1517-1521
-
-
Chuck, G.1
Meeley, R.2
Irish, E.3
Sakai, H.4
Hake, S.5
-
18
-
-
58049086151
-
Identification of flowering-related genes between early flowering trifoliate orange mutant and wild-type trifoliate orange (Poncirus trifoliata L. Raf.) by suppression subtraction hybridization (SSH) and macroarray
-
10.1016/j.gene.2008.09.023 1:CAS:528:DC%2BD1MXovFSi
-
JZ Zhang ZM Li JL Yao CG Hu 2009 Identification of flowering-related genes between early flowering trifoliate orange mutant and wild-type trifoliate orange (Poncirus trifoliata L. Raf.) by suppression subtraction hybridization (SSH) and macroarray Gene. 430 95 104 10.1016/j.gene.2008.09.023 1:CAS:528:DC%2BD1MXovFSi
-
(2009)
Gene.
, vol.430
, pp. 95-104
-
-
Zhang, J.Z.1
Li, Z.M.2
Yao, J.L.3
Hu, C.G.4
-
19
-
-
54949124417
-
Precocious trifoliate orange (Poncirus trifoliata L. Raf.) biology characteristic and its stock experiment
-
in Chinese
-
S Liang X Wang T Wan 1999 Precocious trifoliate orange (Poncirus trifoliata L. Raf.) biology characteristic and its stock experiment ZheJiang Citrus 19 2 4 in Chinese
-
(1999)
ZheJiang Citrus
, vol.19
, pp. 2-4
-
-
Liang, S.1
Wang, X.2
Wan, T.3
-
20
-
-
79956070426
-
Molecular cloning and functional characterization of genes associated with flowering in citrus using an early-flowering trifoliate orange (Poncirus trifoliata L. Raf.) mutant
-
10.1007/s11103-011-9780-2 1:CAS:528:DC%2BC3MXmt1Gnsr4%3D
-
JZ Zhang XY Ai LM Sun DL Zhang WW Guo, et al. 2011 Molecular cloning and functional characterization of genes associated with flowering in citrus using an early-flowering trifoliate orange (Poncirus trifoliata L. Raf.) mutant Plant Molecular Biology 76 1-2 187 204 10.1007/s11103-011-9780-2 1:CAS:528: DC%2BC3MXmt1Gnsr4%3D
-
(2011)
Plant Molecular Biology
, vol.76
, Issue.12
, pp. 187-204
-
-
Zhang, J.Z.1
Ai, X.Y.2
Sun, L.M.3
Zhang, D.L.4
Guo, W.W.5
-
21
-
-
70350451757
-
Enrichment of a set of microRNAs during the cotton fiber development
-
10.1186/1471-2164-10-457
-
PB Kwak QQ Wang XS Chen CX Qiu ZM Yang 2009 Enrichment of a set of microRNAs during the cotton fiber development BMC Genomics 10 457 10.1186/1471-2164-10-457
-
(2009)
BMC Genomics
, vol.10
, pp. 457
-
-
Kwak, P.B.1
Wang, Q.Q.2
Chen, X.S.3
Qiu, C.X.4
Yang, Z.M.5
-
22
-
-
70350438585
-
Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
-
10.1186/1471-2164-10-449
-
J Zhang Y Xu Q Huan K Chong 2009 Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response BMC Genomics 10 449 10.1186/1471-2164-10-449
-
(2009)
BMC Genomics
, vol.10
, pp. 449
-
-
Zhang, J.1
Xu, Y.2
Huan, Q.3
Chong, K.4
-
23
-
-
33845688601
-
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
-
DOI 10.1101/gad.1476406
-
R Rajagopalan H Vaucheret J Trejo DP Bartel 2006 A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana Genes & Development 20 3407 3425 10.1101/gad.1476406 1:CAS:528:DC%2BD2sXhs1ejsw%3D%3D (Pubitemid 44969159)
-
(2006)
Genes and Development
, vol.20
, Issue.24
, pp. 3407-3425
-
-
Rajagopalan, R.1
Vaucheret, H.2
Trejo, J.3
Bartel, D.P.4
-
24
-
-
24644490196
-
Genetics: Elucidation of the small RNA component of the transcriptome
-
DOI 10.1126/science.1114112
-
C Lu SS Tej S Luo CD Haudenschild BC Meyers, et al. 2005 Elucidation of the small RNA component of the transcriptome Science 309 1567 1569 10.1126/science.1114112 1:CAS:528:DC%2BD2MXpsFWju7c%3D (Pubitemid 41266483)
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1567-1569
-
-
Lu, C.1
Tej, S.S.2
Luo, S.3
Haudenschild, C.D.4
Meyers, B.C.5
Green, P.J.6
-
25
-
-
44849106063
-
A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
-
DOI 10.1101/gr.074740.107
-
EA Glazov PA Cottee WC Barris RJ Moore BP Dalrymple, et al. 2008 A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach Genome Research 18 957 10.1101/gr.074740.107 1:CAS:528:DC%2BD1cXnsVygsbk%3D (Pubitemid 351793068)
-
(2008)
Genome Research
, vol.18
, Issue.6
, pp. 957-964
-
-
Glazov, E.A.1
Cottee, P.A.2
Barris, W.C.3
Moore, R.J.4
Dalrymple, B.P.5
Tizard, M.L.6
-
26
-
-
77952611257
-
Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
-
10.1186/1471-2164-11-246
-
Q Xu Y Liu A Zhu X Wu J Ye, et al. 2010 Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type BMC Genomics 11 246 10.1186/1471-2164-11-246
-
(2010)
BMC Genomics
, vol.11
, pp. 246
-
-
Xu, Q.1
Liu, Y.2
Zhu, A.3
Wu, X.4
Ye, J.5
-
27
-
-
69249229480
-
Identification and characterization of 27 conserved microRNAs in citrus
-
10.1007/s00425-009-0971-x 1:CAS:528:DC%2BD1MXhtVait73J
-
C Song J Fang X Li H Liu C Thomas Chao 2009 Identification and characterization of 27 conserved microRNAs in citrus Planta 230 671 685 10.1007/s00425-009-0971-x 1:CAS:528:DC%2BD1MXhtVait73J
-
(2009)
Planta
, vol.230
, pp. 671-685
-
-
Song, C.1
Fang, J.2
Li, X.3
Liu, H.4
Thomas Chao, C.5
-
28
-
-
78951485463
-
Transcriptome profile analysis of flowering molecular processes of early flowering trifoliate orange mutant and the wild-type [Poncirus trifoliata (L.) Raf.] by massively parallel signature sequencing
-
10.1186/1471-2164-12-63 1:CAS:528:DC%2BC3MXhvVKmtbs%3D
-
J Zhang XY Ai LM Sun D Zhang WW Guo, et al. 2011 Transcriptome profile analysis of flowering molecular processes of early flowering trifoliate orange mutant and the wild-type [Poncirus trifoliata (L.) Raf.] by massively parallel signature sequencing BMC Genomics 12 63 10.1186/1471-2164-12-63 1:CAS:528:DC%2BC3MXhvVKmtbs%3D
-
(2011)
BMC Genomics
, vol.12
, pp. 63
-
-
Zhang, J.1
Ai, X.Y.2
Sun, L.M.3
Zhang, D.4
Guo, W.W.5
-
29
-
-
53349177819
-
Characterization of microRNAs in serum: A novel class of biomarkers for diagnosis of cancer and other diseases
-
10.1038/cr.2008.282 1:CAS:528:DC%2BD1cXhtF2hsbbE
-
X Chen Y Ba L Ma X Cai Y Yin, et al. 2008 Characterization of microRNAs in serum: A novel class of biomarkers for diagnosis of cancer and other diseases Cell Research 18 997 1006 10.1038/cr.2008.282 1:CAS:528:DC%2BD1cXhtF2hsbbE
-
(2008)
Cell Research
, vol.18
, pp. 997-1006
-
-
Chen, X.1
Ba, Y.2
Ma, L.3
Cai, X.4
Yin, Y.5
-
30
-
-
77949526665
-
Genome-wide identification of Schistosoma japonicum microRNAs using a deep-sequencing approach
-
10.1371/journal.pone.0008206
-
J Huang P Hao H Chen W Hu Q Yan, et al. 2009 Genome-wide identification of Schistosoma japonicum microRNAs using a deep-sequencing approach PLoS One 4 e8206 10.1371/journal.pone.0008206
-
(2009)
PLoS One
, vol.4
, pp. 8206
-
-
Huang, J.1
Hao, P.2
Chen, H.3
Hu, W.4
Yan, Q.5
-
31
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
DOI 10.1093/nar/gkg595
-
M Zuker 2003 Mfold web server for nucleic acid folding and hybridization prediction Nucleic Acids Research 31 3406 10.1093/nar/gkg595 1:CAS:528:DC%2BD3sXltVWisr8%3D (Pubitemid 37442169)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3406-3415
-
-
Zuker, M.1
-
33
-
-
60149090481
-
Criteria for annotation of plant microRNAs
-
10.1105/tpc.108.064311 1:CAS:528:DC%2BD1MXitVartbo%3D
-
BC Meyers MJ Axtell B Bartel DP Bartel D Baulcombe, et al. 2008 Criteria for annotation of plant microRNAs Plant Cell 20 3186 3190 10.1105/tpc.108.064311 1:CAS:528:DC%2BD1MXitVartbo%3D
-
(2008)
Plant Cell
, vol.20
, pp. 3186-3190
-
-
Meyers, B.C.1
Axtell, M.J.2
Bartel, B.3
Bartel, D.P.4
Baulcombe, D.5
-
34
-
-
13944262052
-
A custom microarray platform for analysis of microRNA gene expression
-
10.1038/nmeth704 1:CAS:528:DC%2BD2MXisVGgtLg%3D
-
JM Thomson J Parker CM Perou SM Hammond 2004 A custom microarray platform for analysis of microRNA gene expression Nature Methods 1 47 53 10.1038/nmeth704 1:CAS:528:DC%2BD2MXisVGgtLg%3D
-
(2004)
Nature Methods
, vol.1
, pp. 47-53
-
-
Thomson, J.M.1
Parker, J.2
Perou, C.M.3
Hammond, S.M.4
-
35
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
10.1093/nar/30.4.e15
-
YH Yang S Dudoit P Luu DM Lin V Peng, et al. 2002 Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation Nucleic Acids Research 30 e15 10.1093/nar/30.4.e15
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 15
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
-
36
-
-
1342288026
-
Affy - Analysis of Affymetrix GeneChip data at the probe level
-
DOI 10.1093/bioinformatics/btg405
-
L Gautier L Cope BM Bolstad RA Irizarry 2004 affy-Analysis of Affymetrix GeneChip data at the probe level Bioinformatics 20 307 10.1093/bioinformatics/ btg405 1:CAS:528:DC%2BD2cXht1Kksr4%3D (Pubitemid 38262761)
-
(2004)
Bioinformatics
, vol.20
, Issue.3
, pp. 307-315
-
-
Gautier, L.1
Cope, L.2
Bolstad, B.M.3
Irizarry, R.A.4
-
37
-
-
29144470346
-
Real-time quantification of microRNAs by stem-loop RT-PCR
-
DOI 10.1093/nar/gni178
-
C Chen DA Ridzon AJ Broomer Z Zhou DH Lee, et al. 2005 Real-time quantification of microRNAs by stem-loop RT-PCR Nucleic Acids Research 33 e179 10.1093/nar/gni178 (Pubitemid 41806407)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.20
-
-
Chen, C.1
Ridzon, D.A.2
Broomer, A.J.3
Zhou, Z.4
Lee, D.H.5
Nguyen, J.T.6
Barbisin, M.7
Xu, N.L.8
Mahuvakar, V.R.9
Andersen, M.R.10
Lao, K.Q.11
Livak, K.J.12
Guegler, K.J.13
-
38
-
-
43449091567
-
Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome
-
10.1016/j.cub.2008.04.042 1:CAS:528:DC%2BD1cXmtVakt7w%3D
-
C Addo-Quaye TW Eshoo DP Bartel MJ Axtell 2008 Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome Current Biology 18 758 762 10.1016/j.cub.2008.04.042 1:CAS:528:DC%2BD1cXmtVakt7w%3D
-
(2008)
Current Biology
, vol.18
, pp. 758-762
-
-
Addo-Quaye, C.1
Eshoo, T.W.2
Bartel, D.P.3
Axtell, M.J.4
-
39
-
-
58049220318
-
CleaveLand: A pipeline for using degradome data to find cleaved small RNA targets
-
10.1093/bioinformatics/btn604 1:CAS:528:DC%2BD1MXmvFWl
-
C Addo-Quaye W Miller MJ Axtell 2009 CleaveLand: A pipeline for using degradome data to find cleaved small RNA targets Bioinformatics 25 130 10.1093/bioinformatics/btn604 1:CAS:528:DC%2BD1MXmvFWl
-
(2009)
Bioinformatics
, vol.25
, pp. 130
-
-
Addo-Quaye, C.1
Miller, W.2
Axtell, M.J.3
-
40
-
-
42449107363
-
Annot8r: GO, EC and KEGG annotation of EST datasets
-
DOI 10.1186/1471-2105-9-180
-
R Schmid ML Blaxter 2008 annot 8 r: GO, EC and KEGG annotation of EST datasets BMC Bioinformatics 9 180 10.1186/1471-2105-9-180 (Pubitemid 351567052)
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 180
-
-
Schmid, R.1
Blaxter, M.L.2
-
41
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
DOI 10.1038/75556
-
M Ashburner CA Ball JA Blake D Botstein H Butler, et al. 2000 Gene ontology: Tool for the unification of biology Nature Genetics 25 25 29 10.1038/75556 1:CAS:528:DC%2BD3cXjtFSlsbc%3D (Pubitemid 30257031)
-
(2000)
Nature Genetics
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
42
-
-
67650711615
-
SOAP2: An improved ultrafast tool for short read alignment
-
10.1093/bioinformatics/btp336 1:CAS:528:DC%2BD1MXovVeku7w%3D
-
R Li C Yu Y Li TW Lam SM Yiu, et al. 2009 SOAP2: An improved ultrafast tool for short read alignment Bioinformatics 25 1966 10.1093/bioinformatics/ btp336 1:CAS:528:DC%2BD1MXovVeku7w%3D
-
(2009)
Bioinformatics
, vol.25
, pp. 1966
-
-
Li, R.1
Yu, C.2
Li, Y.3
Lam, T.W.4
Yiu, S.M.5
-
43
-
-
33645525893
-
MicroRNAs and their regulatory roles in plants
-
DOI 10.1146/annurev.arplant.57.032905.105218
-
MW Jones-Rhoades DP Bartel B Bartel 2006 MicroRNAs and their regulatory roles in plants Annual Review of Plant Physiology 57 19 53 10.1146/annurev. arplant.57.032905.105218 1:CAS:528:DC%2BD28XosVKhsb0%3D (Pubitemid 44061017)
-
(2006)
Annual Review of Plant Biology
, vol.57
, pp. 19-53
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
Bartel, B.3
-
44
-
-
77955387859
-
Computational identification of citrus microRNAs and target analysis in citrus expressed sequence tags
-
10.1111/j.1438-8677.2009.00300.x 1:CAS:528:DC%2BC3cXhsVantrjE
-
C Song Q Jia J Fang F Li C Wang, et al. 2010 Computational identification of citrus microRNAs and target analysis in citrus expressed sequence tags Plant Biology 12 927 934 10.1111/j.1438-8677.2009.00300.x 1:CAS:528: DC%2BC3cXhsVantrjE
-
(2010)
Plant Biology
, vol.12
, pp. 927-934
-
-
Song, C.1
Jia, Q.2
Fang, J.3
Li, F.4
Wang, C.5
-
45
-
-
84859424440
-
-
Tree Genetics & Genomes
-
Wu, X. M.; Liu, M. Y.; Xu, Q.; & Guo, W. W. (2010). Identification and characterization of microRNAs from citrus expressed sequence tags. Tree Genetics & Genomes, 1-17.
-
(2010)
Identification and Characterization of MicroRNAs from Citrus Expressed Sequence Tags
, pp. 1-17
-
-
Wu X., .M.1
Liu M., .Y.2
Xu, Q.3
Guo W., .W.4
-
46
-
-
77955375546
-
Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)
-
10.1186/1471-2164-11-431
-
C Song C Wang C Zhang NK Korir H Yu, et al. 2010 Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata) BMC Genomics 11 431 10.1186/1471-2164-11-431
-
(2010)
BMC Genomics
, vol.11
, pp. 431
-
-
Song, C.1
Wang, C.2
Zhang, C.3
Korir, N.K.4
Yu, H.5
-
47
-
-
0037439053
-
The arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function
-
DOI 10.1101/gad.244103
-
D Staiger L Allenbach N Salathia V Fiechter SJ Davis, et al. 2003 The Arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function Genes & Development 17 256 268 10.1101/gad.244103 1:CAS:528:DC%2BD3sXmtFyhsA%3D%3D (Pubitemid 36105897)
-
(2003)
Genes and Development
, vol.17
, Issue.2
, pp. 256-268
-
-
Staiger, D.1
Allenbach, L.2
Salathia, N.3
Fiechter, V.4
Davis, S.J.5
Millar, A.J.6
Chory, J.7
Fankhauser, C.8
-
48
-
-
39549115890
-
Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
-
DOI 10.1186/gb-2007-8-6-r96
-
Y Yao G Guo Z Ni R Sunkar J Du, et al. 2007 Cloning and characterization of microRNAs from wheat (Triticum aestivum L.) Genome Biology 8 R96 10.1186/gb-2007-8-6-r96 (Pubitemid 351907752)
-
(2007)
Genome Biology
, vol.8
, Issue.6
-
-
Yao, Y.1
Guo, G.2
Ni, Z.3
Sunkar, R.4
Du, J.5
Zhu, J.-K.6
Sun, Q.7
-
49
-
-
34547115664
-
High-throughput sequencing of Arabidopsis microRNAs: Evidence for frequent birth and death of MIRNA genes
-
10.1371/journal.pone.0000219
-
N Fahlgren MD Howell KD Kasschau EJ Chapman CM Sullivan, et al. 2007 High-throughput sequencing of Arabidopsis microRNAs: Evidence for frequent birth and death of MIRNA genes PLoS One 2 e219 10.1371/journal.pone.0000219
-
(2007)
PLoS One
, vol.2
, pp. 219
-
-
Fahlgren, N.1
Howell, M.D.2
Kasschau, K.D.3
Chapman, E.J.4
Sullivan, C.M.5
-
50
-
-
0242361521
-
Regulation of Flowering Time and Floral Organ Identity by a MicroRNA and lts APETALA2-Like Target Genes
-
DOI 10.1105/tpc.016238
-
MJ Aukerman H Sakai 2003 Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes Plant Cell 15 2730 2741 10.1105/tpc.016238 1:CAS:528:DC%2BD3sXpt1OrurY%3D (Pubitemid 37470672)
-
(2003)
Plant Cell
, vol.15
, Issue.11
, pp. 2730-2741
-
-
Aukerman, M.J.1
Sakai, H.2
-
51
-
-
0029801292
-
Glossy15, an APETALA2-like gene from maize that regulates leaf epidermal cell identity
-
SP Moose PH Sisco 1996 Glossy15, an APETALA2-like gene from maize that regulates leaf epidermal cell identity Genes & Development 10 3018 3027 10.1101/gad.10.23.3018 1:CAS:528:DyaK28XnsV2mu7o%3D (Pubitemid 26412528)
-
(1996)
Genes and Development
, vol.10
, Issue.23
, pp. 3018-3027
-
-
Moose, S.P.1
Sisco, P.H.2
-
52
-
-
14844320081
-
Arabidopsis AtSPL14, a plant-specific SBP-domain transcription factor, participates in plant development and sensitivity to fumonisin B1
-
DOI 10.1111/j.1365-313X.2005.02334.x
-
JM Stone X Liang ER Nekl JJ Stiers 2005 Arabidopsis AtSPL14, a plant-specific SBP-domain transcription factor, participates in plant development and sensitivity to fumonisin B1 Plant Journal 41 744 754 10.1111/j.1365-313X.2005.02334.x 1:CAS:528:DC%2BD2MXisVWitbs%3D (Pubitemid 40336005)
-
(2005)
Plant Journal
, vol.41
, Issue.5
, pp. 744-754
-
-
Stone, J.M.1
Liang, X.2
Nekl, E.R.3
Stiers, J.J.4
-
53
-
-
0031214215
-
Functional analysis of the Arabidopsis thaliana SBP-box gene SPL3: A novel gene involved in the floral transition
-
10.1046/j.1365-313X.1997.12020367.x
-
GH Cardon S H hmann K Nettesheim H Saedler P Huijser 2002 Functional analysis of the Arabidopsis thaliana SBP-box gene SPL3: A novel gene involved in the floral transition Plant Journal 12 367 377 10.1046/j.1365-313X.1997. 12020367.x
-
(2002)
Plant Journal
, vol.12
, pp. 367-377
-
-
Cardon, G.H.1
Hmann S, H.2
Nettesheim, K.3
Saedler, H.4
Huijser, P.5
-
54
-
-
35748944555
-
The GIGANTEA-regulated microRNA172 mediates photoperiodic flowering independent of CONSTANS in Arabidopsis
-
DOI 10.1105/tpc.107.054528
-
JH Jung YH Seo PJ Seo JL Reyes J Yun, et al. 2007 The GIGANTEA-regulated microRNA172 mediates photoperiodic flowering independent of CONSTANS in Arabidopsis Plant Cell 19 2736 10.1105/tpc.107.054528 1:CAS:528: DC%2BD2sXhtlWhsr7I (Pubitemid 350046225)
-
(2007)
Plant Cell
, vol.19
, Issue.9
, pp. 2736-2748
-
-
Jung, J.-H.1
Seo, Y.-H.2
Pil, J.S.3
Reyes, J.L.4
Yun, J.5
Chua, N.-H.6
Park, C.-M.7
|