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Volumn 58, Issue 4, 2012, Pages 531-539

Phylogenetic diversity of nitrogen-fixing bacteria and the nifH gene from mangrove rhizosphere soil

Author keywords

Mangrove; nifH; Nitrogen fixing bacteria; Phylogeny; Rhizosphere soil

Indexed keywords

BACTERIUM; CLONE; MANGROVE; NITROGEN FIXATION; PHYLOGENETICS; PHYLOGENY; POLYMORPHISM; RHIZOSPHERE; SPECIES DIVERSITY;

EID: 84859337006     PISSN: 00084166     EISSN: 14803275     Source Type: Journal    
DOI: 10.1139/W2012-016     Document Type: Article
Times cited : (31)

References (20)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • PMID:7535888
    • Amann, R.I., Ludwig, W., and Schleifer, K.H. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59(1): 143-169. PMID:7535888.
    • (1995) Microbiol. Rev , vol.59 , Issue.1 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 2
    • 37349115287 scopus 로고    scopus 로고
    • Diversity of nifH gene pools in the rhizosphere of two cultivars of sorghum (Sorghum bicolor) treated with contrasting levels of nitrogen fertilizer
    • doi:10.1111/j.1574-6968.2007.00975.x. PMID:18070072
    • Coelho, M.R., de Vos, M., Carneiro, N.P., Marriel, I.E., Paiva, E., and Seldin, L. 2008. Diversity of nifH gene pools in the rhizosphere of two cultivars of sorghum (Sorghum bicolor) treated with contrasting levels of nitrogen fertilizer. FEMS Microbiol. Lett. 279(1): 15-22. doi:10.1111/j.1574-6968.2007.00975.x. PMID:18070072.
    • (2008) FEMS Microbiol. Lett , vol.279 , Issue.1 , pp. 15-22
    • Coelho, M.R.1    de Vos, M.2    Carneiro, N.P.3    Marriel, I.E.4    Paiva, E.5    Seldin, L.6
  • 3
    • 36649038040 scopus 로고    scopus 로고
    • Molecular characterization of diazotrophic and denitrifying bacteria associated with mangrove roots
    • doi:10.1128/AEM.01892-06. PMID:17827324
    • Flores-Mireles, A.L., Winans, S.C., and Holguin, G. 2007. Molecular characterization of diazotrophic and denitrifying bacteria associated with mangrove roots. Appl. Environ. Microbiol. 73(22): 7308-7321. doi:10.1128/AEM.01892-06. PMID:17827324.
    • (2007) Appl. Environ. Microbiol , vol.73 , Issue.22 , pp. 7308-7321
    • Flores-Mireles, A.L.1    Winans, S.C.2    Holguin, G.3
  • 4
    • 0000917309 scopus 로고
    • Explicit calculation of the rarefaction diversity measurement and the determination of sufficient sample size
    • doi:10.2307/1934716
    • Heck, K.L., Jr, van Belle, G., and Simberloff, D. 1975. Explicit calculation of the rarefaction diversity measurement and the determination of sufficient sample size. Ecology, 56(6): 1459-1461. doi:10.2307/1934716.
    • (1975) Ecology , vol.56 , Issue.6 , pp. 1459-1461
    • Heck Jr., K.L.1    van Belle, G.2    Simberloff, D.3
  • 5
    • 43549114260 scopus 로고    scopus 로고
    • Diversity of nifH genotypes in floating periphyton mats along a nutrient gradient in the Florida Everglades
    • doi:10.1007/s00284-008-9124-x.PMID:18324437
    • Jasrotia, P., and Ogram, A. 2008. Diversity of nifH genotypes in floating periphyton mats along a nutrient gradient in the Florida Everglades. Curr. Microbiol. 56(6): 563-568. doi:10.1007/s00284-008-9124-x.PMID:18324437.
    • (2008) Curr. Microbiol , vol.56 , Issue.6 , pp. 563-568
    • Jasrotia, P.1    Ogram, A.2
  • 6
    • 16644376320 scopus 로고    scopus 로고
    • Biology of mangroves and mangrove ecosystms
    • doi:10.1016/, S0065-2881(01)40003-4
    • Kathiresan, K., and Bingham, B.L. 2001. Biology of mangroves and mangrove ecosystms. Adv. Mar. Biol. 40: 81-251. doi:10.1016/S0065-2881(01)40003-4.
    • (2001) Adv. Mar. Biol , vol.40 , pp. 81-251
    • Kathiresan, K.1    Bingham, B.L.2
  • 7
    • 29144514574 scopus 로고    scopus 로고
    • Diazotrophic diversity and distribution in the tropical and subtropical Atlantic Ocean
    • doi:10.1128/AEM.71.12.7910-7919.2005. PMID:16332767
    • Langlois, R.J., LaRoche, J., and Raab, P.A. 2005. Diazotrophic diversity and distribution in the tropical and subtropical Atlantic Ocean. Appl. Environ. Microbiol. 71(12): 7910-7919. doi:10. 1128/AEM.71.12.7910-7919.2005. PMID:16332767.
    • (2005) Appl. Environ. Microbiol , vol.71 , Issue.12 , pp. 7910-7919
    • Langlois, R.J.1    Laroche, J.2    Raab, P.A.3
  • 8
    • 34547653982 scopus 로고    scopus 로고
    • Molecular ecology of nifH genes and transcripts in the eastern Mediterranean Sea
    • doi:10.1111/j.1462-2920.2007.01353.x. PMID:17686031
    • Man-Aharonovich, D., Kress, N., Zeev, E.B., Berman-Frank, I., and Beja, O. 2007. Molecular ecology of nifH genes and transcripts in the eastern Mediterranean Sea. Environ. Microbiol. 9(9): 2354-2363. doi:10.1111/j.1462-2920.2007.01353.x. PMID:17686031
    • (2007) Environ. Microbiol , vol.9 , Issue.9 , pp. 2354-2363
    • Man-Aharonovich, D.1    Kress, N.2    Zeev, E.B.3    Berman-Frank, I.4    Beja, O.5
  • 9
    • 33745014137 scopus 로고    scopus 로고
    • Bacterial community structure of a pesticide-contaminated site and assessment of changes induced in community structure during bioremediation
    • doi:10.1111/j.1574-6941.2006.00103.x. PMID:16819955
    • Paul, D., Pandey, G., Meier, C., van der Meer, J.R., and Jain, R.K. 2006. Bacterial community structure of a pesticide-contaminated site and assessment of changes induced in community structure during bioremediation. FEMS Microbiol. Ecol. 57(1): 116-127. doi:10.1111/j.1574-6941.2006.00103.x. PMID:16819955.
    • (2006) FEMS Microbiol. Ecol , vol.57 , Issue.1 , pp. 116-127
    • Paul, D.1    Pandey, G.2    Meier, C.3    van der Meer, J.R.4    Jain, R.K.5
  • 10
    • 0035348260 scopus 로고    scopus 로고
    • Comparison of nifH gene pools in soils and soil microenvironments with contrasting properties
    • doi:10.1128/AEM.67.5.2255-2262. 2001. PMID:11319109
    • Poly, F., Ranjard, L., Nazaret, S., Gourbiere, F., and Monrozier, L.J. 2001. Comparison of nifH gene pools in soils and soil microenvironments with contrasting properties. Appl. Environ. Microbiol. 67(5): 2255-2262. doi:10.1128/AEM.67.5.2255-2262. 2001. PMID:11319109.
    • (2001) Appl. Environ. Microbiol , vol.67 , Issue.5 , pp. 2255-2262
    • Poly, F.1    Ranjard, L.2    Nazaret, S.3    Gourbiere, F.4    Monrozier, L.J.5
  • 11
    • 17444378288 scopus 로고    scopus 로고
    • 2-fixing, and total-community bacteria by terminal restriction fragment length polymorphism analysis using multiple restriction enzymes
    • doi:10.1128/AEM.71.4.2026-2035.2005. PMID:15812035
    • Rösch, C., and Bothe, H. 2005. Improved assessment of denitrifying, N2-fixing, and total-community bacteria by terminal restriction fragment length polymorphism analysis using multiple restriction enzymes. Appl. Environ. Microbiol. 71(4): 2026-2035. doi:10. 1128/AEM.71.4.2026-2035.2005. PMID:15812035.
    • (2005) Appl. Environ. Microbiol , vol.71 , Issue.4 , pp. 2026-2035
    • Rösch, C.1    Bothe, H.2
  • 12
    • 0033083698 scopus 로고    scopus 로고
    • Analysis of nifH gene pool complexity in soil and litter at a Douglas fir forest site in the Oregon cascade mountain range
    • PMID:9925556
    • Widmer, F., Shaffer, B.T., Porteous, L.A., and Seidler, R.J. 1999. Analysis of nifH gene pool complexity in soil and litter at a Douglas fir forest site in the Oregon cascade mountain range. Appl. Environ. Microbiol. 65(2): 374-380. PMID:9925556.
    • (1999) Appl. Environ. Microbiol , vol.65 , Issue.2 , pp. 374-380
    • Widmer, F.1    Shaffer, B.T.2    Porteous, L.A.3    Seidler, R.J.4
  • 13
    • 33745137490 scopus 로고    scopus 로고
    • A simple method for removing humic acids from marine sediment samples prior to DNA extraction
    • Xi, F., Fu, L., and Wang, G. 2006. A simple method for removing humic acids from marine sediment samples prior to DNA extraction. High Technol. Lett. 16: 539-544.
    • (2006) High Technol. Lett , vol.16 , pp. 539-544
    • Xi, F.1    Fu, L.2    Wang, G.3
  • 14
    • 33947182125 scopus 로고    scopus 로고
    • Archaeal communities in mangrove soil characterized by 16S rRNA gene clones
    • PMID:17082752
    • Yan, B., Hong, K., and Yu, Z.N. 2006. Archaeal communities in mangrove soil characterized by 16S rRNA gene clones. J. Microbiol. 44(5): 566-571. PMID:17082752.
    • (2006) J. Microbiol , vol.44 , Issue.5 , pp. 566
    • Yan, B.1    Hong, K.2    Yu, Z.N.3
  • 15
    • 0033916012 scopus 로고    scopus 로고
    • Expression of nifH genes in natural microbial assemblages in Lake George, New York, detected by reverse transcriptase PCR
    • doi:10.1128/AEM.66.7.3119-3124. 2000. PMID:10877818
    • Zani, S., Mellon, M.T., Collier, J.L., and Zehr, J.P. 2000. Expression of nifH genes in natural microbial assemblages in Lake George, New York, detected by reverse transcriptase PCR. Appl. Environ. Microbiol. 66(7): 3119-3124. doi:10.1128/AEM.66.7.3119-3124. 2000. PMID:10877818.
    • (2000) Appl. Environ. Microbiol , vol.66 , Issue.7 , pp. 3119-3124
    • Zani, S.1    Mellon, M.T.2    Collier, J.L.3    Zehr, J.P.4
  • 16
    • 0038234799 scopus 로고    scopus 로고
    • Nitrogenase gene diversity and microbial community structure: A cross-system comparison
    • doi:10.1046/j.1462-2920.2003.00451.x. PMID:12823187
    • Zehr, J.P., Jenkins, B.D., Short, S.M., and Steward, G.F. 2003. Nitrogenase gene diversity and microbial community structure: a cross-system comparison. Environ. Microbiol. 5(7): 539-554. doi:10.1046/j.1462-2920.2003.00451.x. PMID:12823187.
    • (2003) Environ. Microbiol , vol.5 , Issue.7 , pp. 539-554
    • Zehr, J.P.1    Jenkins, B.D.2    Short, S.M.3    Steward, G.F.4
  • 17
    • 45849134883 scopus 로고    scopus 로고
    • Phylogenetic diversity of nitrogen-fixing bacteria in mangrove sediments assessed by PCR-denaturing gradient gel electrophoresis
    • doi:10.1007/s00203-008-0359-5. PMID:18347779
    • Zhang, Y., Dong, J., Yang, Z., Zhang, S., and Wang, Y. 2008. Phylogenetic diversity of nitrogen-fixing bacteria in mangrove sediments assessed by PCR-denaturing gradient gel electrophoresis. Arch. Microbiol. 190(1): 19-28. doi:10.1007/s00203-008-0359-5. PMID:18347779.
    • (2008) Arch. Microbiol , vol.190 , Issue.1 , pp. 19-28
    • Zhang, Y.1    Dong, J.2    Yang, Z.3    Zhang, S.4    Wang, Y.5
  • 18
    • 0030070838 scopus 로고    scopus 로고
    • DNA recovery from soils of diverse composition
    • PMID:8593035
    • Zhou, J., Bruns, M.A., and Tiedje, J.M. 1996. DNA recovery from soils of diverse composition. Appl. Environ. Microbiol. 62(2): 316-322. PMID:8593035.
    • (1996) Appl. Environ. Microbiol , vol.62 , Issue.2 , pp. 316-322
    • Zhou, J.1    Bruns, M.A.2    Tiedje, J.M.3
  • 19
    • 0017944787 scopus 로고
    • Biological dinitrogen fixation (acetylene reduction) associated with Florida mangroves
    • PMID:637550
    • Zuberer, D.A., and Silver, W.S. 1978. Biological dinitrogen fixation (acetylene reduction) associated with Florida mangroves. Appl. Environ. Microbiol. 35(3): 567-575. PMID:637550.
    • (1978) Appl. Environ. Microbiol , vol.35 , Issue.3 , pp. 567-575
    • Zuberer, D.A.1    Silver, W.S.2
  • 20
    • 0000470782 scopus 로고
    • 2-fixation (acetylene reduction) and the microbial colonization of mangrove roots
    • doi:10.1111/j.1469-8137.1979.tb02673.x
    • Zuberer, D.A., and Silver, W.S. 1979. N2-fixation (acetylene reduction) and the microbial colonization of mangrove roots. New Phytol. 82(2): 467-471. doi:10.1111/j.1469-8137.1979. tb02673.x.
    • (1979) New Phytol , vol.82 , Issue.2 , pp. 467-471
    • Zuberer, D.A.1    Silver, W.S.2


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