-
1
-
-
70350150000
-
The emerging complexity of protein ubiquitination
-
Komander, D. (2009) The emerging complexity of protein ubiquitination. Biochem. Soc. Trans. 37, 937-953
-
(2009)
Biochem. Soc. Trans.
, vol.37
, pp. 937-953
-
-
Komander, D.1
-
2
-
-
33745813187
-
Reading protein modifications with interaction domains
-
Seet, B.T., Dikic, I., Zhou, M.M. and Pawson, T. (2006) Reading protein modifications with interaction domains. Nat. Rev. Mol. Cell Biol. 7, 473-483
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 473-483
-
-
Seet, B.T.1
Dikic, I.2
Zhou, M.M.3
Pawson, T.4
-
3
-
-
76649123968
-
Ubiquitin not only serves as a tag but also assists degradation by inducing protein unfolding
-
Hagai, T. and Levy, Y. (2010) Ubiquitin not only serves as a tag but also assists degradation by inducing protein unfolding. Proc. Natl. Acad. Sci. U.S.A. 107, 2001-2006
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 2001-2006
-
-
Hagai, T.1
Levy, Y.2
-
4
-
-
70349441058
-
Ubiquitin-binding domains: From structures to functions
-
Dikic, I., Wakatsuki, S. and Walters, K.J. (2009) Ubiquitin-binding domains: from structures to functions. Nat. Rev. Mol. Cell Biol. 10, 659-671
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 659-671
-
-
Dikic, I.1
Wakatsuki, S.2
Walters, K.J.3
-
5
-
-
33646064427
-
Structural complexity in ubiquitin recognition
-
Harper, J.W. and Schulman, B.A. (2006) Structural complexity in ubiquitin recognition. Cell 124, 1133-1136
-
(2006)
Cell
, vol.124
, pp. 1133-1136
-
-
Harper, J.W.1
Schulman, B.A.2
-
6
-
-
75949107942
-
Unconventional ubiquitin recognition by the ubiquitin-binding motif within the Y family DNA polymerases ι and Rev1
-
Bomar, M.G., D'Souza, S., Bienko, M., Dikic, I., Walker, G.C. and Zhou, P. (2010) Unconventional ubiquitin recognition by the ubiquitin-binding motif within the Y family DNA polymerases ι and Rev1. Mol. Cell 37, 408-417
-
(2010)
Mol. Cell
, vol.37
, pp. 408-417
-
-
Bomar, M.G.1
D'Souza, S.2
Bienko, M.3
Dikic, I.4
Walker, G.C.5
Zhou, P.6
-
7
-
-
77953108542
-
The diversity of ubiquitin recognition: Hot spots and varied specificity
-
Winget, J.M. and Mayor, T. (2010) The diversity of ubiquitin recognition: hot spots and varied specificity. Mol. Cell 38, 627-635
-
(2010)
Mol. Cell
, vol.38
, pp. 627-635
-
-
Winget, J.M.1
Mayor, T.2
-
8
-
-
59649086030
-
Nonproteolytic functions of ubiquitin in cell signaling
-
Chen, Z.J. and Sun, L.J. (2009) Nonproteolytic functions of ubiquitin in cell signaling. Mol. Cell 33, 275-286
-
(2009)
Mol. Cell
, vol.33
, pp. 275-286
-
-
Chen, Z.J.1
Sun, L.J.2
-
9
-
-
33644792262
-
Structural basis for ubiquitin recognition and autoubiquitination by Rabex-5
-
Lee, S., Tsai, Y.C., Mattera, R., Smith, W.J., Kostelansky, M.S., Weissman, A.M., Bonifacino, J.S. and Hurley, J.H. (2006) Structural basis for ubiquitin recognition and autoubiquitination by Rabex-5. Nat. Struct. Mol. Biol. 13, 264-271
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 264-271
-
-
Lee, S.1
Tsai, Y.C.2
Mattera, R.3
Smith, W.J.4
Kostelansky, M.S.5
Weissman, A.M.6
Bonifacino, J.S.7
Hurley, J.H.8
-
10
-
-
33646036373
-
Crystal structure of the ubiquitin binding domains of Rabex-5 reveals two modes of interaction with ubiquitin
-
Penengo, L., Mapelli, M., Murachelli, A.G., Confalonieri, S., Magri, L., Musacchio, A., Di Fiore, P.P., Polo, S. and Schneider, T.R. (2006) Crystal structure of the ubiquitin binding domains of Rabex-5 reveals two modes of interaction with ubiquitin. Cell 124, 1183-1195
-
(2006)
Cell
, vol.124
, pp. 1183-1195
-
-
Penengo, L.1
Mapelli, M.2
Murachelli, A.G.3
Confalonieri, S.4
Magri, L.5
Musacchio, A.6
Di Fiore, P.P.7
Polo, S.8
Schneider, T.R.9
-
11
-
-
52149103164
-
63-linked polyubiquitin chains
-
63-linked polyubiquitin chains. Nature 455, 358-362
-
(2008)
Nature
, vol.455
, pp. 358-362
-
-
Sato, Y.1
Yoshikawa, A.2
Yamagata, A.3
Mimura, H.4
Yamashita, M.5
Ookata, K.6
Nureki, O.7
Iwai, K.8
Komada, M.9
Fukai, S.10
-
12
-
-
32544444479
-
A novel ubiquitin-binding protein ZNF216 functioning in muscle atrophy
-
DOI 10.1038/sj.emboj.7600945, PII 7600945
-
Hishiya, A., Iemura, S., Natsume, T., Takayama, S., Ikeda, K. and Watanabe, K. (2006) A novel ubiquitin-binding protein ZNF216 functioning in muscle atrophy. EMBO J. 25, 554-564 (Pubitemid 43237662)
-
(2006)
EMBO Journal
, vol.25
, Issue.3
, pp. 554-564
-
-
Hishiya, A.1
Iemura, S.-I.2
Natsume, T.3
Takayama, S.4
Ikeda, K.5
Watanabe, K.6
-
13
-
-
0032947267
-
Muscle protein breakdown and the critical role of the ubiquitin-proteasome pathway in normal and disease states
-
Lecker, S.H., Solomon, V., Mitch, W.E. and Goldberg, A.L. (1999) Muscle protein breakdown and the critical role of the ubiquitin-proteasome pathway in normal and disease states. J. Nutr. 129, 227S-237S
-
(1999)
J. Nutr.
, vol.129
-
-
Lecker, S.H.1
Solomon, V.2
Mitch, W.E.3
Goldberg, A.L.4
-
14
-
-
56449095862
-
The involvement of the ubiquitin proteasome system in human skeletal muscle remodelling and atrophy
-
Murton, A.J., Constantin, D. and Greenhaff, P.L. (2008) The involvement of the ubiquitin proteasome system in human skeletal muscle remodelling and atrophy. Biochim. Biophys. Acta 1782, 730-743
-
(2008)
Biochim. Biophys. Acta
, vol.1782
, pp. 730-743
-
-
Murton, A.J.1
Constantin, D.2
Greenhaff, P.L.3
-
15
-
-
26444495582
-
A RANKL-inducible gene Znf216 in osteoclast differentiation
-
Hishiya, A., Ikeda, K. and Watanabe, K. (2005) A RANKL-inducible gene Znf216 in osteoclast differentiation. J. Recept. Signal Transduction Res. 25, 199-216
-
(2005)
J. Recept. Signal Transduction Res.
, vol.25
, pp. 199-216
-
-
Hishiya, A.1
Ikeda, K.2
Watanabe, K.3
-
16
-
-
1942425971
-
ZNF216 Is an A20-like and IκB kinase γ-interacting inhibitor of NF-κB activation
-
Huang, J., Teng, L., Li, L., Liu, T., Li, L., Chen, D., Xu, L.G., Zhai, Z. and Shu, H.B. (2004) ZNF216 Is an A20-like and IκB kinase γ-interacting inhibitor of NF-κB activation. J. Biol. Chem. 279, 16847-16853
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 16847-16853
-
-
Huang, J.1
Teng, L.2
Li, L.3
Liu, T.4
Li, L.5
Chen, D.6
Xu, L.G.7
Zhai, Z.8
Shu, H.B.9
-
17
-
-
33846240526
-
Sequestosome 1/p62 - More than just a scaffold
-
DOI 10.1016/j.febslet.2006.12.027, PII S0014579306014815
-
Seibenhener, M.L., Geetha, T. and Wooten, M.W. (2007) Sequestosome 1/p62: more than just a scaffold. FEBS Lett. 581, 175-179 (Pubitemid 46096472)
-
(2007)
FEBS Letters
, vol.581
, Issue.2
, pp. 175-179
-
-
Seibenhener, M.L.1
Geetha, T.2
Wooten, M.W.3
-
18
-
-
74649083113
-
Dimerisation of the UBA domain of p62 inhibits ubiquitin binding and regulates NF-κB signalling
-
Long, J., Garner, T.P., Pandya, M.J., Craven, C.J., Chen, P., Shaw, B., Williamson, M.P., Layfield, R. and Searle, M.S. (2010) Dimerisation of the UBA domain of p62 inhibits ubiquitin binding and regulates NF-κB signalling. J. Mol. Biol. 396, 178-194
-
(2010)
J. Mol. Biol.
, vol.396
, pp. 178-194
-
-
Long, J.1
Garner, T.P.2
Pandya, M.J.3
Craven, C.J.4
Chen, P.5
Shaw, B.6
Williamson, M.P.7
Layfield, R.8
Searle, M.S.9
-
19
-
-
0034599476
-
The atypical PKC-interacting protein p62 channels NF-κB activation by the IL-1-TRAF6 pathway
-
Sanz, L., Diaz-Meco, M.T., Nakano, H. and Moscat, J. (2000) The atypical PKC-interacting protein p62 channels NF-κB activation by the IL-1-TRAF6 pathway. EMBO J. 19, 1576-1586 (Pubitemid 30182165)
-
(2000)
EMBO Journal
, vol.19
, Issue.7
, pp. 1576-1586
-
-
Sanz, L.1
Diaz-Meco, M.T.2
Nakano, H.3
Moscat, J.4
-
20
-
-
0033153320
-
The interaction of p62 with RIP links the atypical PKCs to NF-κB activation
-
DOI 10.1093/emboj/18.11.3044
-
Sanz, L., Sanchez, P., Lallena, M.J., Diaz-Meco, M.T. and Moscat, J. (1999) The interaction of p62 with RIP links the atypical PKCs to NF-κB activation. EMBO J. 18, 3044-3053 (Pubitemid 29255613)
-
(1999)
EMBO Journal
, vol.18
, Issue.11
, pp. 3044-3053
-
-
Sanz, L.1
Sanchez, P.2
Lallena, M.-J.3
Diaz-Meco, M.T.4
Moscat, J.5
-
21
-
-
80054983080
-
Independent interactions of ubiquitin-binding domains in a ubiquitin-mediated ternary complex
-
Garner, T.P., Strachan, J., Shedden, E.C., Long, J, Cavey, J.R., Shaw, B., Layfield, R. and Searle, M.S. (2011) Independent interactions of ubiquitin-binding domains in a ubiquitin-mediated ternary complex. Biochemistry 50, 9076-9087
-
(2011)
Biochemistry
, vol.50
, pp. 9076-9087
-
-
Garner, T.P.1
Strachan, J.2
Shedden, E.C.3
Long, J.4
Cavey, J.R.5
Shaw, B.6
Layfield, R.7
Searle, M.S.8
-
22
-
-
0037442962
-
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
-
Dominguez, C., Boelens, R. and Bonvin, A.M. (2003) HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. J. Am. Chem. Soc. 125, 1731-1737
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.3
-
23
-
-
33645472931
-
Site-directed parallel spin-labeling and paramagnetic relaxation enhancement in structure determination of membrane proteins by solution NMR spectroscopy
-
Liang, B., Bushweller, J.H. and Tamm, L.K. (2006) Site-directed parallel spin-labeling and paramagnetic relaxation enhancement in structure determination of membrane proteins by solution NMR spectroscopy. J. Am. Chem. Soc. 128, 4389-4397
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 4389-4397
-
-
Liang, B.1
Bushweller, J.H.2
Tamm, L.K.3
-
24
-
-
39649120317
-
Affinity makes the difference: Nonselective interaction of the UBA domain of ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains
-
Zhang, D., Raasi, S. and Fushman, D. (2008) Affinity makes the difference: nonselective interaction of the UBA domain of ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains. J. Mol. Biol. 377, 162-180
-
(2008)
J. Mol. Biol.
, vol.377
, pp. 162-180
-
-
Zhang, D.1
Raasi, S.2
Fushman, D.3
-
25
-
-
41949134141
-
Ubiquitin recognition by the ubiquitin-associated domain of p62 involves a novel conformational switch
-
Long, J., Gallagher, T.R., Cavey, J.R., Sheppard, P.W., Ralston, S.H., Layfield, R. and Searle, M.S. (2008) Ubiquitin recognition by the ubiquitin-associated domain of p62 involves a novel conformational switch. J. Biol. Chem. 283, 5427-5440
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 5427-5440
-
-
Long, J.1
Gallagher, T.R.2
Cavey, J.R.3
Sheppard, P.W.4
Ralston, S.H.5
Layfield, R.6
Searle, M.S.7
-
26
-
-
33646597289
-
Loss of ubiquitin binding is a unifying mechanism by which mutations of SQSTM1 cause Paget's disease of bone
-
Cavey, J.R., Ralston, S.H., Sheppard, P.W., Ciani, B., Gallagher, T.R., Long, J.E., Searle, M.S. and Layfield, R. (2006) Loss of ubiquitin binding is a unifying mechanism by which mutations of SQSTM1 cause Paget's disease of bone. Calcif. Tissue Int. 78, 271-277
-
(2006)
Calcif. Tissue Int.
, vol.78
, pp. 271-277
-
-
Cavey, J.R.1
Ralston, S.H.2
Sheppard, P.W.3
Ciani, B.4
Gallagher, T.R.5
Long, J.E.6
Searle, M.S.7
Layfield, R.8
-
27
-
-
15344339092
-
Loss of ubiquitin-binding associated with Paget's disease of bone p62 (SQSTM1) mutations
-
Cavey, J.R., Ralston, S.H., Hocking, L.J., Sheppard, P.W., Ciani, B., Searle, M.S. and Layfield, R. (2005) Loss of ubiquitin-binding associated with Paget's disease of bone p62 (SQSTM1) mutations. J. Bone Miner. Res. 20, 619-624
-
(2005)
J. Bone Miner. Res.
, vol.20
, pp. 619-624
-
-
Cavey, J.R.1
Ralston, S.H.2
Hocking, L.J.3
Sheppard, P.W.4
Ciani, B.5
Searle, M.S.6
Layfield, R.7
-
28
-
-
79958086002
-
Impact of p62/SQSTM1 UBA domain mutations linked to Paget's disease of bone on ubiquitin recognition
-
Garner, T.P., Long, J., Layfield, R. and Searle, M.S. (2011) Impact of p62/SQSTM1 UBA domain mutations linked to Paget's disease of bone on ubiquitin recognition. Biochemistry 50, 4665-4674
-
(2011)
Biochemistry
, vol.50
, pp. 4665-4674
-
-
Garner, T.P.1
Long, J.2
Layfield, R.3
Searle, M.S.4
-
29
-
-
63649086486
-
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins
-
Raiborg, C. and Stenmark, H. (2009) The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins. Nature 458, 445-452
-
(2009)
Nature
, vol.458
, pp. 445-452
-
-
Raiborg, C.1
Stenmark, H.2
-
30
-
-
78649292467
-
Ubiquitin binding to A20 ZnF4 is required for modulation of NF-κB signalling
-
Bosanac, I., Wertz, I.E., Pan, B., Yu, C., Kusam, S., Lam, C., Phu, L., Phung, Q., Maurer, B., Arnott, D. et al. (2010) Ubiquitin binding to A20 ZnF4 is required for modulation of NF-κB signalling. Mol. Cell 40, 548-557
-
(2010)
Mol. Cell
, vol.40
, pp. 548-557
-
-
Bosanac, I.1
Wertz, I.E.2
Pan, B.3
Yu, C.4
Kusam, S.5
Lam, C.6
Phu, L.7
Phung, Q.8
Maurer, B.9
Arnott, D.10
-
31
-
-
3142581995
-
Structural insights into endosomal sorting complex required for transport (ESCRT-I) recognition of ubiquitin proteins
-
Teo, H., Veprintsev, D.B. and Williams, R.L. (2004) Structural insights into endosomal sorting complex required for transport (ESCRT-I) recognition of ubiquitin proteins. J. Biol. Chem. 279, 28689-28696
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 28689-28696
-
-
Teo, H.1
Veprintsev, D.B.2
Williams, R.L.3
-
32
-
-
4544255838
-
Structure of the ESCRT-II endosomal trafficking complex
-
DOI 10.1038/nature02914
-
Hierro, A., Sun, J., Rusnak, A.S., Kim, J., Prag, G., Emr, S.D. and Hurley, J.H. (2004) Structure of the ESCRT-II endosomal trafficking complex. Nature 431, 221-225 (Pubitemid 39243478)
-
(2004)
Nature
, vol.431
, Issue.7005
, pp. 221-225
-
-
Hierro, A.1
Sun, J.I.2
Rusnak, A.S.3
Kim, J.4
Prag, G.5
Emr, S.O.6
Hurley, J.H.7
-
33
-
-
65549140668
-
Characterization of a non-UBA domain mis-sense mutation of sequestosome 1 (SQSTM1) in Paget's disease of bone
-
Najat, D., Garner, T., Hagen, T., Shaw, B., Sheppard, P.W., Falchetti, A., Marini, F., Brandi, M.L., Long, J.E., Cavey, J.R. et al. (2009) Characterization of a non-UBA domain mis-sense mutation of sequestosome 1 (SQSTM1) in Paget's disease of bone. J. Bone Miner. Res. 24, 632-642
-
(2009)
J. Bone Miner. Res.
, vol.24
, pp. 632-642
-
-
Najat, D.1
Garner, T.2
Hagen, T.3
Shaw, B.4
Sheppard, P.W.5
Falchetti, A.6
Marini, F.7
Brandi, M.L.8
Long, J.E.9
Cavey, J.R.10
|