Metabolic and molecular characterization of bacterial community associated to Patagonian Chilean oligotrophic-lakes of quaternary glacial origin

World Journal of Microbiology and Biotechnology

Volumn 28, Issue 4, 2012, Pages 1511-1521

  Leon, Carla ^a   Campos, Víctor ^a   Urrutia, Roberto ^a   Mondaca, María Angélica ^a  

^a UNIVERSITY OF CONCEPCIÓN   (Chile)

Author keywords

Bacterial community; Biolog EcoPlate sediments; Biomonitoring micro scale; Patagonian Lakes; Physiological profile

Indexed keywords

ANTHROPOGENIC POLLUTION; AQUATIC ECOSYSTEM; BACTERIAL COMMUNITY; BERTRAND; BETAPROTEOBACTERIA; BIOMONITORING-MICRO-SCALE; CLIMATIC CHANGES; ENVIRONMENTAL CONDITIONS; GAMMAPROTEOBACTERIA; LAKE SEDIMENTS; METABOLIC ACTIVITY; MICRO-SCALES; MICROBIAL COMMUNITIES; MOLECULAR CHARACTERIZATION; MOLECULAR TECHNIQUES; PHYSICO-CHEMICAL ANALYSIS; PHYSIOLOGICAL PROFILE; VOLCANIC ACTIVITIES;

ANOXIC SEDIMENTS; BACTERIA; CHEMICAL ANALYSIS; METABOLISM; PHYSIOLOGY; SEDIMENTOLOGY;

LAKES;

ARTICLE; BACTERIUM; BIOTA; CHILE; CLASSIFICATION; DENATURING GRADIENT GEL ELECTROPHORESIS; FLUORESCENCE IN SITU HYBRIDIZATION; GENETICS; LAKE; METABOLISM; MICROBIOLOGY; SEDIMENT;

BACTERIA; BIOTA; CHILE; DENATURING GRADIENT GEL ELECTROPHORESIS; GEOLOGIC SEDIMENTS; IN SITU HYBRIDIZATION, FLUORESCENCE; LAKES;

BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA; GAMMAPROTEOBACTERIA;

EID: 84859270469     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-011-0953-6     Document Type: Article

References (59)

1. Amann RI, Ludwig W, Scheleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
2. Aniya M, Enomoto H (1986) Glacier variations and their causes in the Northern Patagonian Icefield, Chile since 1944. Arctic Alpine Res 18: 307-316.
3. APHA-AWWA-WPCF (1985) Standard methods for the examination of water and wastewater, 16th edn. EUA, Washington.
4. Barra R, Pozo K, Urrutia R (2001) Plaguicidas organoclorados persistentes en sedimentos de tres lagos costeros y un lago andino de Chile Central. Bol Soc Chil Quím 46: 149-159.
5. Bennett KD, Haberle SG, Lumley SH (2000) The last glacial-Holocene transition in southern Chile. Science 13: 325-328.
6. Bertrand S, Boes X, Castiaux J, Charlet F, Urrutia R, Espinoza C, Charlier B, Lepoint G, Fagel N (2005) Temporal evolution of sediment supply in Puyehue Lake (southern Chile) during the last 600 years and its climatic significance. Quat Res 64: 163-175.
7. Borgel R (1992) Evidencias del llamado efecto invernadero en las regiones australes de Chile. Revista de geografía norte grande 19: 97-103.
8. Boyle JF (2002) Mineralogical and geochemical indicator techniques. In: Last W, Smol JP (eds) Tracking environmental change using lake sediments. Springer, New York, pp 83-141.
9. Brosius J, Palmer ML, Kennedy PJ, Nollerm HF (1978) Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci 75: 4801-4805.
10. Campos H (1984) Limnological studies of Araucanian lakes Chile verhandlungen internationale vereinigung für theoretische und angewandte limnologie, pp 1319-1327.
11. Campos H, Steffens W, Agüero G, Parra O, Zúñiga L (1992) Limnology of Lake Ranco (Chile). Limnológica 22: 337-353.
12. Campos VL, León C, Mondaca MA, Yañez J, Zaror C (2010) Arsenic mobilization by epilithic bacterial communities associated with volcanic rocks from Camarones River Atacama Desert Northern Chile. Arch Environ Contam Toxicol. doi: 10. 1007/s00244-010-9601-7.
13. Capin FS, Körner CH (1995) Arctic and alpine biodiversity. Ecol Stud 113: 45-62.
14. Clarke K, Gorley R (2001) PRIMER v5: user manual/tutorial PRIMER-E. Plymouth, UK.
15. Cottrell MT, Kirchman DL (2000) Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization. Appl Environ Microbiol 66: 5116-5122.
16. Díaz M, Pedrozo F, Baccala N (2000) Summer classification of Southern Hemisphere temperate lakes (Patagonia, Argentina). Lakes Reserv 5: 213-229.
17. Dorador C, Castillo G, Witzel KP, Vila I (2007) Bacterial diversity in the sediments of a temperate artificial lake Rapel reservoir. Rev Chil Hist Nat 80: 213-224.
18. Fowler J, Cohen L, Jarvis P (2006) Practical statistics for field biology, 2nd edn. Wiley, West Sussex, pp 179-209.
19. Fromin N, Hamelin J, Tarnawski S, Roesti D, Jourdain-Miserez K, Forestier N, Teyssier-Cuvelle S, Gillet F, Aragno M, Rossi P (2002) Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns. Environ Microbiol 4: 634-643.
20. Garland JL (1996) Analytical approaches to the characterization of samples of microbial commununities using patterns of potential C source utilization. Soil Biol Biochem 28: 213-221.
21. Geller W (1992) The temperature stratication and related characteristics of Chilean lakes in midsummer. Aquat Sci 54: 37-57.
22. Glasser N, Harrison S (2005) Sediment Distribution around Glacially Abraded Bedrock Landforms (Whalebacks) at Lago Tranquilo, Chile. Geografiska Annaler, Series A, Physical Geography 87: 421-430.
23. Glasser KF, Jansson KN, Harrison S, Rivera A (2005) Geomorphological evidence for variations of the North Patagonian Icefield during the Holocene. Geomorphology 71: 263-277.
24. Glasser NF, Jansson KN, Mitchell WA, Harrison S (2006) Geomorphology and sedimentology of the Tempanos moraines Laguna San Rafael North Patagonian Icefield. J Quat Sci 21: 629-643.
25. Gomez E, Garland J, Conti M (2004) Reproducibility in the response of soil bacterial community-level physiological profiles from a land use intensification gradient. Appl Soil Ecol 26: 21-30.
26. Hansson LA, Lindell M, Tranvik LJ (1993) Biomass distribution among trophic levels in lakes lacking vertebrate predators. Oikos 66: 101-106.
27. Harch BD, Correll RL, Meech W, Kirkby CA, Pankhurst CE (1997) Using the Gini coefficient with BIOLOG substrate utilisation data to provide an alternative quantitative measure for comparing bacterial soil communities. J Microbiol Methods 30: 91-101.
28. Harrison S, Glasser NF, Aniya M (2004) Morphostratigraphy of moraines in the Lago Tranquilo area Chilean Patagonia. Bull Glaciol Res 21: 37-43.
29. Harrison S, Winchester V, Warren CR, Passmore DG (2005) Quantifying rates of paraglacial sedimentation: an example from Chilean Patagonia Zeitschrift fur. Geomorphologie 49: 321-334.
30. Huggel C (2004) Assessment of glacial hazards based on remote sensing and GIS modeling. PhD thesis, University of Zurich.
31. Imhoff JF (2006) The phototrophic Alpha-proteobacteria. In: Dworkin M, Falkow S, Rosenberg E, Schleifer K, Stackebrandt E (eds) The prokaryotes, 3rd edn. Springer, Minneapolis, pp 41-64.
32. Insam H (1997) A new set of substrates proposed for community characterization in environmental samples. In: Insam H, Rangger A (eds) Microbial communities. Springer, Berlin.
33. Kilroy C, Biggs JFB, Vyverman W, Broady PA (2006) Benthic diatom communities in subalpine pools in New Zealand: relationships to environmental variables. Hydrobiologia 561: 95-110.
34. Kratzmann DJ, Carey S, Scasso R, Naranjo JA (2009) Compositional variations and magma mixing in the 1991 eruptions of Hudson volcano Chile. Bull Volcanol 71: 419-439.
35. Manz W, Amann R, Ludwig W, Schleifer KH (1992) Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions. Syst Appl Environ Microbiol 15: 593-600.
36. Marzorati M, Wittebolle L, Boon N, Daffonchio D, Verstraete W (2008) How to get more out of molecular fingerprints: practical tools for microbial ecology. Environ Microbiol 10: 1571-1581.
37. McGee D, Broecker W, Winckler G (2010) Gustiness: the driver of glacial dustiness? Quat Sci Rev 29: 2340-2350.
38. Muyzer G, Dewaal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for rRNA. Appl Environ Microbiol 59: 695-700.
39. Olsson U, Englund JE, Engstrand U (2005) Biometri. Studentlitteratur, Lund.
40. Paerl HW, Dyble J, Moisander PH, Noble RT, Piehler MF, Pinckney JL, Steppe TF, Twomey L, Valdes LM (2003) Microbial indicators of aquatic ecosystem change: current applications to eutrophication studies. FEMS Microbiol Ecol 46: 233-246.
41. Pardo I, Alvarez M, Casas J, Moreno J, Vicas S, Bonada N, Alba-Tercedor J, Jáimez-Cuellar P, Moya G, Prat N, Robles S, Suarez M, Toro M, Vidal-Abarca M (2002) El habitat de los ríos mediterráneos. Diseño de un índice de diversidad de habitat. Limnetica 21: 115-132.
42. Pielou EC (1975) Ecological diversity. Wiley, New York.
43. Rautio M, Sorvari S, Korhola A (2000) Diatom and crustacean zooplankton communities their seasonal variability and representation in the sediments of subarctic Lake Saanajärvi. J Limnol 59: 81-96.
44. Rogora M, Massaferro J, Marchetto A, Tartari G, Mosello R (2008) The water chemistry of Northern Patagonian Lakes and their nitrogen status in comparison with remote lakes in different regions of the globe. J Limnol 67: 75-86.
45. Rojas E, Le Roux J (2005) Sedimentary processes on a Gilbert-type delta in Lake Llanquihue southern Chile. Rev Geol Chile 32: 19-31.
46. Scasso RA, Carey S (2005) Morphology and formation of glassy volcanic ash from the August 2-15 1991 eruption of Hudson Volcano Chile. Lat Am J Sedimentol Basin Anal 12: 3-21.
47. Shannon CE, Weaver W (1963) The mathematical theory of communication. University of Illinois Press, Urbana.
48. Soto D (2002) Oligotrophic patterns in southern Chile lakes: the relevance of nutrients and mixing depth. Rev Chilena Hist Nat 75: 377-393.
49. Soto D, Zuñiga L (1991) Zooplankton assemblages of Chilean temperate lakes: a comparison with North American counter parts. Rev Chil Hist Nat 64: 569-581.
50. Torsvic V, Ovreas L, Thingstad TF (2002) Prokaryotic diversity-Magnitude dynamics and controlling factors. Science 296: 1064-1066.
51. Vila I, Muhlhauser H (1987) Dinamica de lagos de altura. Perspectivas de investigación. Arch Biol Med Exp 20: 95-103.
52. Weller R, Glockner FO, Amann R (2000) 16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum Cytophaga-Flavobacterium-Bacteroides. Syst Appl Microbiol 23: 107-114.
53. Wentworth CK (1922) A scale of grade and class terms for clastic sediments. J Geol 30: 377-392.
54. Wobus A, Bleul C, Maassen S, Scheerer C, Schuppler M, Jacobs E, Röske I (2003) Microbial diversity and functional characterization of sediments from reservoirs of different trophic state. FEMS Microbiol Ecol 46: 331-347.
55. Woelfl S (2007) The distribution of large mixotrophic ciliates (Stentor) in deep North Patagonian Lakes (Chile): first results. Limnologica 37: 28-36.
56. Woelfl S, Villalobos L, Parra O (2003) Trophic parameters and method validation in Lake Riñihue (North Patagonia: Chile) from 1978 through 1997. Rev Chil Hist Nat 76: 459-474.
57. Woelfl S, Garcia P, Duarte C (2010) Chlorella-bearing ciliates (Stentor Ophrydium) dominate in an oligotrophic deep North Patagonian Lake (Lake Caburgua Chile). Limnologica 40: 134-139.
58. Yan F, McBratney AB, Copeland L (2000) Functional substrate biodiversity of cultivated and uncultivated A horizons of vertisols in NW New South Wales. Geoderma 96: 321-343.
59. Zhao X, Yang L, Yu Z, Peng N, Xiao L, Yin D, Qin B (2008) Characterization of depth-related microbial communities in lake sediment by denaturing gradient gel electrophoresis of amplified 16S rRNA fragments. J Environ Sci 20: 224-230.