-
1
-
-
0036357283
-
The unique biochemistry of methanogenesis
-
Deppenmeier, U. (2002) The unique biochemistry of methanogenesis Prog. Nucleic Acid Mol. Biol. 71, 222-283
-
(2002)
Prog. Nucleic Acid Mol. Biol.
, vol.71
, pp. 222-283
-
-
Deppenmeier, U.1
-
2
-
-
47549119041
-
Methanogenic archaea: Ecologically relevant differences in energy conservation
-
Thauer, R. K., Kaster, A.-K., Seedorf, H., Buckel., W., and Hedderich, R. (2008) Methanogenic archaea: ecologically relevant differences in energy conservation Nat. Rev. Microbiol. 6, 579-591
-
(2008)
Nat. Rev. Microbiol.
, vol.6
, pp. 579-591
-
-
Thauer, R.K.1
Kaster, A.-K.2
Seedorf, H.3
Buckel, W.4
Hedderich, R.5
-
3
-
-
44449149379
-
Life close to the thermodynamic limit: How methanogenic archaea conserve energy
-
Deppenmeier, U. and Müller, V. (2008) Life close to the thermodynamic limit: how methanogenic archaea conserve energy Results Probl Cell Differ. 45, 123-152
-
(2008)
Results Probl Cell Differ.
, vol.45
, pp. 123-152
-
-
Deppenmeier, U.1
Müller, V.2
-
4
-
-
0001203042
-
Bioenergetics of methanogenesis
-
(Ferry, J. G. Ed.) pp, Chapman and Hall, New York.
-
Muller, V., Blaut, M., and Gottschalk, G. (1993) Bioenergetics of methanogenesis, in Methanogenesis (Ferry, J. G., Ed.) pp 360-406, Chapman and Hall, New York.
-
(1993)
Methanogenesis
, pp. 360-406
-
-
Muller, V.1
Blaut, M.2
Gottschalk, G.3
-
5
-
-
33947380915
-
Adaptations to energy stress dictate the ecology and evolution of the Archaea
-
Valentine, D. L. (2007) Adaptations to energy stress dictate the ecology and evolution of the Archaea Nat. Rev. Microbiol. 5, 316-323
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 316-323
-
-
Valentine, D.L.1
-
6
-
-
0031016808
-
Hydrogen regulation of growth, growth yields, and methane gene transcription in Methanobacterium thermoautotrophicum Δh
-
Morgan, R. M., Pihl, T. D., Nölling, J., and Reeve, J. N. (1997) Hydrogen regulation of growth, growth yields, and methane gene transcription in Methanobacterium thermoautotrophicum ΔH J. Bacteriol. 179, 889-898
-
(1997)
J. Bacteriol.
, vol.179
, pp. 889-898
-
-
Morgan, R.M.1
Pihl, T.D.2
Nölling, J.3
Reeve, J.N.4
-
7
-
-
0033626511
-
2-forming methylenetetrahydromethanopterin dehydrogenase (Hmd) and of HmdII and HmdIII in Methanothermobacter marburgensis
-
2-forming methylenetetrahydromethanopterin dehydrogenase (Hmd) and of HmdII and HmdIII in Methanothermobacter marburgensis Arch. Microbiol. 174, 225-232
-
(2000)
Arch. Microbiol.
, vol.174
, pp. 225-232
-
-
Afting, C.1
Kremmer, E.2
Brucker, C.3
Hochheimer, A.4
Thauer, R.K.5
-
8
-
-
1842329756
-
Methanogenesis: Genes, genomes, and who's on first?
-
Reeve, J. N., Nölling, J., Morgan, R. M., and Smith, D. R. (1997) Methanogenesis: genes, genomes, and who's on first? J. Bacteriol. 179, 5975-5986
-
(1997)
J. Bacteriol.
, vol.179
, pp. 5975-5986
-
-
Reeve, J.N.1
Nölling, J.2
Morgan, R.M.3
Smith, D.R.4
-
9
-
-
34547405862
-
Functionally distinct genes regulated by hydrogen limitation and growth rate in methanogenic Archaea
-
Hendrickson, E. L., Haydock, A. K., Moore, B. C., Whitman, W. B., and Leigh, J. A. (2007) Functionally distinct genes regulated by hydrogen limitation and growth rate in methanogenic Archaea Proc. Natl. Acad. Sci. U. S. A. 104, 8930-8934
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 8930-8934
-
-
Hendrickson, E.L.1
Haydock, A.K.2
Moore, B.C.3
Whitman, W.B.4
Leigh, J.A.5
-
11
-
-
0025877458
-
Activities of formylmethanofuran dehydrogenase, methylenetetrahydromethanopterin dehydrogenase, methylenetetrahydromethanopterin reductase, and heterodisulfide reductase in methanogenic bacteria
-
Schworer, B. and Thauer, R. K. (1991) Activities of formylmethanofuran dehydrogenase, methylenetetrahydromethanopterin dehydrogenase, methylenetetrahydromethanopterin reductase, and heterodisulfide reductase in methanogenic bacteria Arch. Microbiol. 155, 459-465
-
(1991)
Arch. Microbiol.
, vol.155
, pp. 459-465
-
-
Schworer, B.1
Thauer, R.K.2
-
12
-
-
0026338480
-
420-reducing methylene tetrahydromethanopterin dehydrogenases are genetically distinct enzymes in Methanobacterium thermautotrophicum (Marburg)
-
420-reducing methylene tetrahydromethanopterin dehydrogenases are genetically distinct enzymes in Methanobacterium thermautotrophicum (Marburg) Eur. J. Biochem. 202, 1205-1208
-
(1991)
Eur. J. Biochem.
, vol.202
, pp. 1205-1208
-
-
Von Bunau, R.1
Zirngibl, C.2
Thauer, R.K.3
Klein, A.4
-
13
-
-
0028833512
-
420-dependent methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase gene from Methanobacterium thermautotrophicum strain Marburg and functional expression in Escherichia coli
-
420-dependent methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase gene from Methanobacterium thermautotrophicum strain Marburg and functional expression in Escherichia coli J. Biol. Chem. 270, 2827-2832
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 2827-2832
-
-
Mukhopadhyay, B.1
Purwantini, E.2
Pihl, T.D.3
Reeve, J.N.4
Daniels, L.5
-
14
-
-
0031908850
-
420-reducing hydrogenases in Methanosarcina barkeri
-
420-reducing hydrogenases in Methanosarcina barkeri Arch. Microbiol. 169, 201-205
-
(1998)
Arch. Microbiol.
, vol.169
, pp. 201-205
-
-
Vaupel, M.1
Thauer, R.K.2
-
15
-
-
0025014263
-
10-methylenetetrahydromethanopterin dehydrogenase from Methanobacterium thermautotrophicum has hydrogenase activity
-
10-methylenetetrahydromethanopterin dehydrogenase from Methanobacterium thermautotrophicum has hydrogenase activity FEBS Lett. 261, 112-116
-
(1990)
FEBS Lett.
, vol.261
, pp. 112-116
-
-
Zirngibl, C.1
Hedderich, R.2
Thauer, R.K.3
-
17
-
-
47249144402
-
420 and production of hydrogen during methanogenesis
-
420 and production of hydrogen during methanogenesis J. Bacteriol. 190, 4818-4821
-
(2008)
J. Bacteriol.
, vol.190
, pp. 4818-4821
-
-
Hendrickson, E.L.1
Leigh, J.A.2
-
18
-
-
48249129653
-
The crystal structure of [Fe]-hydrogenase reveals the geometry of the active site
-
Shima, S., Pilak, O., Vogt, S., Schick, M., Stagni, M. S., Meyer-Klaucke, W., Warkentin, E., Thauer, R. K., and Ermler, U. (2008) The crystal structure of [Fe]-hydrogenase reveals the geometry of the active site Science 321, 572-575
-
(2008)
Science
, vol.321
, pp. 572-575
-
-
Shima, S.1
Pilak, O.2
Vogt, S.3
Schick, M.4
Stagni, M.S.5
Meyer-Klaucke, W.6
Warkentin, E.7
Thauer, R.K.8
Ermler, U.9
-
19
-
-
33750086029
-
The iron-sulfur cluster-free hydrogenase (Hmd) is a metalloenzyme with a novel iron binding motif
-
Korbas, M., Vogt, S., Meyer-Klaucke, W., Bill, E., Lyon, E. J., and Thauer, R. K. (2006) The iron-sulfur cluster-free hydrogenase (Hmd) is a metalloenzyme with a novel iron binding motif J. Biol. Chem. 281, 30804-30813
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 30804-30813
-
-
Korbas, M.1
Vogt, S.2
Meyer-Klaucke, W.3
Bill, E.4
Lyon, E.J.5
Thauer, R.K.6
-
21
-
-
33646474887
-
The crystal structure of the apoenzyme of the iron-sulphur cluster-free hydrogenase
-
Pilak, O., Mamat, B., Vogt, S., Hagemeier, C. H., Thauer, R. K., Shima, S., Vonrhein, C., Warkentin, E., and Ermler, U. (2006) The crystal structure of the apoenzyme of the iron-sulphur cluster-free hydrogenase J. Mol. Biol. 358, 798-809
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 798-809
-
-
Pilak, O.1
Mamat, B.2
Vogt, S.3
Hagemeier, C.H.4
Thauer, R.K.5
Shima, S.6
Vonrhein, C.7
Warkentin, E.8
Ermler, U.9
-
22
-
-
15644383855
-
Complete genome sequence of Methanobacterium thermoautotrophicum Δh: Functional analysis and comparatiye genomics
-
Smith, D. R., Doucette-Stamm, L. A., Deloughery, C., Lee, H., Dubois, J., and Aldredge, T. 1997, Complete genome sequence of Methanobacterium thermoautotrophicum ΔH: functional analysis and comparatiye genomics J. Bacteriol. 179, 7135-7155
-
(1997)
J. Bacteriol.
, vol.179
, pp. 7135-7155
-
-
Smith, D.R.1
Doucette-Stamm, L.A.2
Deloughery, C.3
Lee, H.4
Dubois, J.5
Aldredge, T.6
-
23
-
-
16044367245
-
Complete genome sequence of the methanogenic archaeon Methanococcus janaschii
-
Bult, C. J., White, O., Olsen, G. J., Zhou, L., Fleischmann, R. D., Sutton, G. G., and Blake, J. A. 1996, Complete genome sequence of the methanogenic archaeon Methanococcus janaschii Science 273, 1058-1073
-
(1996)
Science
, vol.273
, pp. 1058-1073
-
-
Bult, C.J.1
White, O.2
Olsen, G.J.3
Zhou, L.4
Fleischmann, R.D.5
Sutton, G.G.6
Blake, J.A.7
-
24
-
-
70349322995
-
Comprehensive computational analysis of Hmd enzymes and paralogs in methanogenic Archaea
-
Goldman, A. D., Leigh, J. A., and Samudrala, R. (2009) Comprehensive computational analysis of Hmd enzymes and paralogs in methanogenic Archaea BMC Evol. Biol. 9, 199
-
(2009)
BMC Evol. Biol.
, vol.9
, pp. 199
-
-
Goldman, A.D.1
Leigh, J.A.2
Samudrala, R.3
-
25
-
-
0034604238
-
Synthesis of cysteinyl-tRNA(Cys) by a genome that lacks the normal cysteine-tRNA synthetase
-
Lipman, R. S., Sowers, K. R., and Hou, Y. M. (2000) Synthesis of cysteinyl-tRNA(Cys) by a genome that lacks the normal cysteine-tRNA synthetase Biochemistry 39, 7792-7798
-
(2000)
Biochemistry
, vol.39
, pp. 7792-7798
-
-
Lipman, R.S.1
Sowers, K.R.2
Hou, Y.M.3
-
26
-
-
0038408635
-
Association of an aminoacyl-tRNA synthetase with a putative metabolic protein in archaea
-
Lipman, R. S. A., Chen, J., Evilia, C., Vitseva, O., and Hou, Y.-M. (2003) Association of an aminoacyl-tRNA synthetase with a putative metabolic protein in archaea Biochemistry 42, 7487-7496
-
(2003)
Biochemistry
, vol.42
, pp. 7487-7496
-
-
Lipman, R.S.A.1
Chen, J.2
Evilia, C.3
Vitseva, O.4
Hou, Y.-M.5
-
27
-
-
44749086081
-
Structural and functional mapping of the archaeal multi-aminoacyl-tRNA synthetase complex
-
Hausmann, C. D. and Ibba, M. (2008) Structural and functional mapping of the archaeal multi-aminoacyl-tRNA synthetase complex FEBS Lett. 582, 2178-2182
-
(2008)
FEBS Lett.
, vol.582
, pp. 2178-2182
-
-
Hausmann, C.D.1
Ibba, M.2
-
28
-
-
35548983465
-
An aminoacyl-tRNA synthetase:elongation factor complex for substrate channeling in archaeal translation
-
Praetorius-Ibba, M., Hausmann, C. D., Paras, M., Rogers, T. E., and Ibba, M. (2007) An aminoacyl-tRNA synthetase:elongation factor complex for substrate channeling in archaeal translation Nucleic Acids Res. 35, 6094-6102
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 6094-6102
-
-
Praetorius-Ibba, M.1
Hausmann, C.D.2
Paras, M.3
Rogers, T.E.4
Ibba, M.5
-
29
-
-
77956095201
-
New functions of aminoacyl-tRNA synthetases beyond translation
-
Guo, M., Yang, X.-L., and Schimmel, P. (2010) New functions of aminoacyl-tRNA synthetases beyond translation Nat. Rev. Mol. Cell Biol. 11, 668-674
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 668-674
-
-
Guo, M.1
Yang, X.-L.2
Schimmel, P.3
-
31
-
-
20144380970
-
RNA-dependent cysteine biosynthesis in archaea
-
Sauerwald, A., Zhu, W., Major, T. A., Roy, H., Palioura, S., Jahn, D., Whitman, W. B., Yates, J. R., III, Ibba, M., and Soll, D. (2005) RNA-dependent cysteine biosynthesis in archaea Science 307, 1969-1972
-
(2005)
Science
, vol.307
, pp. 1969-1972
-
-
Sauerwald, A.1
Zhu, W.2
Major, T.A.3
Roy, H.4
Palioura, S.5
Jahn, D.6
Whitman, W.B.7
Yates III, J.R.8
Ibba, M.9
Soll, D.10
-
32
-
-
4644312237
-
Direct charging of tRNA(CUA) with pyrrolysine in vitro and in vivo
-
Blight, S. K., Larue, R. C., Mahapatra, A., Longstaff, D. G., Chang, E., Zhao, G., Kang, P. T., Green-Church, K. B., Chan, M. K., and Krzycki, J. A. (2004) Direct charging of tRNA(CUA) with pyrrolysine in vitro and in vivo Nature 431, 333-335
-
(2004)
Nature
, vol.431
, pp. 333-335
-
-
Blight, S.K.1
Larue, R.C.2
Mahapatra, A.3
Longstaff, D.G.4
Chang, E.5
Zhao, G.6
Kang, P.T.7
Green-Church, K.B.8
Chan, M.K.9
Krzycki, J.A.10
-
33
-
-
0035174911
-
Chemical and enzymatic synthesis of tRNAs for high-throughput crystallization
-
Sherlin, L. D., Bullock, T. L., Nissan, T. A., Perona, J. J., Lariviere, F. J., Uhlenbeck, O. C., and Scaringe, S. A. (2001) Chemical and enzymatic synthesis of tRNAs for high-throughput crystallization RNA 7, 1671-1678
-
(2001)
RNA
, vol.7
, pp. 1671-1678
-
-
Sherlin, L.D.1
Bullock, T.L.2
Nissan, T.A.3
Perona, J.J.4
Lariviere, F.J.5
Uhlenbeck, O.C.6
Scaringe, S.A.7
-
34
-
-
79956133928
-
The design involved in PapI and Lrp regulation of the pap operon
-
Kawamura, T., Vartanian, A. S., Zhou, H., and Dahlquist, F. W. (2011) The design involved in PapI and Lrp regulation of the pap operon J. Mol. Biol. 409, 311-332
-
(2011)
J. Mol. Biol.
, vol.409
, pp. 311-332
-
-
Kawamura, T.1
Vartanian, A.S.2
Zhou, H.3
Dahlquist, F.W.4
-
35
-
-
0028817155
-
Validity of nucleic acid purities monitored by 260nm/280nm absorbance ratios
-
Glasel, J. A. (1995) Validity of nucleic acid purities monitored by 260nm/280nm absorbance ratios BioTechniques 18, 62-63
-
(1995)
BioTechniques
, vol.18
, pp. 62-63
-
-
Glasel, J.A.1
-
36
-
-
34547585449
-
Determination of refractive index increment ratios for protein-nucleic acid complexes by surface plasmon resonance
-
Di Primo, C. and Lebars, I. (2007) Determination of refractive index increment ratios for protein-nucleic acid complexes by surface plasmon resonance Anal. Biochem. 368, 148-155
-
(2007)
Anal. Biochem.
, vol.368
, pp. 148-155
-
-
Di Primo, C.1
Lebars, I.2
-
37
-
-
77955235194
-
Synthesis of Glu-tRNA(Gln) by engineered and natural aminoacyl-tRNA synthetases
-
Rodríguez-Hernández, A., Bhaskaran, H., Hadd, A., and Perona, J. J. (2010) Synthesis of Glu-tRNA(Gln) by engineered and natural aminoacyl-tRNA synthetases Biochemistry 49, 6727-6736
-
(2010)
Biochemistry
, vol.49
, pp. 6727-6736
-
-
Rodríguez-Hernández, A.1
Bhaskaran, H.2
Hadd, A.3
Perona, J.J.4
-
38
-
-
39549086795
-
Mobility shift DNA-binding assay using gel electrophoresis
-
(Ausubel, F. M. Eds.) Chapter 12, Unit 12.2.
-
Buratowski, S. and Chodosh, L. A. (2001) Mobility shift DNA-binding assay using gel electrophoresis, in Current Protocols in Molecular Biology (Ausubel, F. M., Eds.) Chapter 12, Unit 12.2.
-
(2001)
Current Protocols in Molecular Biology
-
-
Buratowski, S.1
Chodosh, L.A.2
-
39
-
-
0028934572
-
Fluorescence anisotropy applied to biomolecular interactions
-
Jameson, D. M. and Sawyer, W. H. (1995) Fluorescence anisotropy applied to biomolecular interactions Methods Enzymol. 246, 283-300
-
(1995)
Methods Enzymol.
, vol.246
, pp. 283-300
-
-
Jameson, D.M.1
Sawyer, W.H.2
-
40
-
-
0033582291
-
Intra-tRNA distance measurements for nucleocapsid protein-dependent tRNA unwinding during priming of HIV reverse transcription
-
Chan, B., Weidemaier, K., Yip, W. T., Barbara, P. F., and Musier-Forsyth, K. (1999) Intra-tRNA distance measurements for nucleocapsid protein-dependent tRNA unwinding during priming of HIV reverse transcription Proc. Natl. Acad. Sci. U. S. A. 96, 459-464
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 459-464
-
-
Chan, B.1
Weidemaier, K.2
Yip, W.T.3
Barbara, P.F.4
Musier-Forsyth, K.5
-
41
-
-
39049099984
-
Methods for the study of strictly anaerobic microorganisms
-
(Oren, F. A. R. a. A. Ed.) Vol. Elsevier/Academic Press, Oxford.
-
Sowers, K. R. and Watts, J. E. M. (2006) Methods for the study of strictly anaerobic microorganisms, in Methods in Microbiology (Oren, F. A. R. a. A., Ed.) Vol. 35, Elsevier/Academic Press, Oxford.
-
(2006)
Methods in Microbiology
, vol.35
-
-
Sowers, K.R.1
Watts, J.E.M.2
-
42
-
-
0032731169
-
Reactor-scale cultivation of the hyperthermophilic methanarchaeon Methanococcus jannaschii to high cell densities
-
Mukhopadhyay, B., Johnson, E. F., and Wolfe, R. S. (1999) Reactor-scale cultivation of the hyperthermophilic methanarchaeon Methanococcus jannaschii to high cell densities Appl. Environ. Microbiol. 65, 5059-5065
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 5059-5065
-
-
Mukhopadhyay, B.1
Johnson, E.F.2
Wolfe, R.S.3
-
43
-
-
77951276163
-
Optimization of the hybridization-based method for purification of thermostable tRNAs in the presence of tetraalkylammonium salts
-
Yokogawa, T., Kitamura, Y., Nakamura, D., Ohno, S., and Nishikawa, K. (2010) Optimization of the hybridization-based method for purification of thermostable tRNAs in the presence of tetraalkylammonium salts Nucleic Acids Res. 38, e89
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 89
-
-
Yokogawa, T.1
Kitamura, Y.2
Nakamura, D.3
Ohno, S.4
Nishikawa, K.5
-
44
-
-
38649136232
-
Methods for kinetic and thermodynamic analysis of aminoacyl-tRNA synthetases
-
Francklyn, C. S., First, E. A., Perona, J. J., and Hou, Y.-M. (2008) Methods for kinetic and thermodynamic analysis of aminoacyl-tRNA synthetases Methods 44, 100-118
-
(2008)
Methods
, vol.44
, pp. 100-118
-
-
Francklyn, C.S.1
First, E.A.2
Perona, J.J.3
Hou, Y.-M.4
-
46
-
-
27544465234
-
Asymmetric behavior of archaeal prolyl-tRNA synthetase
-
Ambrogelly, A., Kamtekar, S., Stathopoulos, C., Kennedy, D., and Söll, D. (2005) Asymmetric behavior of archaeal prolyl-tRNA synthetase FEBS Lett. 57, 6017-6022
-
(2005)
FEBS Lett.
, vol.57
, pp. 6017-6022
-
-
Ambrogelly, A.1
Kamtekar, S.2
Stathopoulos, C.3
Kennedy, D.4
Söll, D.5
-
47
-
-
0004040064
-
-
2 nd ed. pp, Kluwer Academic/Plenum Publishers, New York.
-
Lakowicz, J. R. (1999) Principles of Fluorescence Spectroscopy, 2 nd ed., pp 291-319, Kluwer Academic/Plenum Publishers, New York.
-
(1999)
Principles of Fluorescence Spectroscopy
, pp. 291-319
-
-
Lakowicz, J.R.1
-
49
-
-
80053192105
-
2G6 in thermophilic methanogens by the novel tRNA methyltransferase Trm14
-
2G6 in thermophilic methanogens by the novel tRNA methyltransferase Trm14 Nucleic Acids Res. 39, 7641-7655
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 7641-7655
-
-
Menezes, S.1
Kirk, G.2
Krivos, K.L.3
Apolinario, E.E.4
Reich, N.O.5
Sowers, K.6
Limbach, P.7
Perona, J.J.8
|