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Volumn 1, Issue 4, 2011, Pages 362-368

Mining of protein contact maps for protein fold prediction

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; DECISION TREES; FORECASTING;

EID: 84859151893     PISSN: 19424787     EISSN: 19424795     Source Type: Journal    
DOI: 10.1002/widm.35     Document Type: Article
Times cited : (12)

References (23)
  • 1
    • 84873204828 scopus 로고    scopus 로고
    • SCOP: Structural Classification of Proteins. Available at:(Accessed June 2010)
    • SCOP: Structural Classification of Proteins. Available at: http://scop.berkeley.edu/. (Accessed June 2010).
  • 2
    • 49749137012 scopus 로고    scopus 로고
    • Analysis of protein folds using protein contact networks
    • Barah P, Sinha S. Analysis of protein folds using protein contact networks. Pramana 2008, 71:369-378.
    • (2008) Pramana , vol.71 , pp. 369-378
    • Barah, P.1    Sinha, S.2
  • 4
    • 33746208821 scopus 로고    scopus 로고
    • Prediction of contact maps using support vector machines
    • Zhao Y, Karypis G. Prediction of contact maps using support vector machines. Int J Artif Intell Tools 2005, 14:849-866.
    • (2005) Int J Artif Intell Tools , vol.14 , pp. 849-866
    • Zhao, Y.1    Karypis, G.2
  • 7
    • 16344377463 scopus 로고    scopus 로고
    • Evolution and similarity evaluation of protein structures in contact map space
    • Gupta N, Mangal N, Biswas S. Evolution and similarity evaluation of protein structures in contact map space. Protein Struct Function Bioinf 2005, 59:196-204.
    • (2005) Protein Struct Function Bioinf , vol.59 , pp. 196-204
    • Gupta, N.1    Mangal, N.2    Biswas, S.3
  • 10
    • 24744454843 scopus 로고    scopus 로고
    • Predicting protein folding pathways
    • Zaki MJ, Morishita S, Rigoutsos I, eds. Seattle, WA: Springer
    • Zaki MJ, Nadimpally V, Bardhan D, Bystroff C. Predicting protein folding pathways. In: Zaki MJ, Morishita S, Rigoutsos I, eds. Datamining in Bioinformatics. Seattle, WA: Springer; 2004.
    • (2004) Datamining in Bioinformatics.
    • Zaki, M.J.1    Nadimpally, V.2    Bardhan, D.3    Bystroff, C.4
  • 12
    • 84873102600 scopus 로고    scopus 로고
    • RCSB PDB. Available at:(Accessed July 2010).
    • RCSB PDB. Available at: http://www.rcsb.org/pdb/home/home.do. (Accessed July 2010).
  • 13
    • 34547909602 scopus 로고    scopus 로고
    • Assortative mixing in protein contact networks and protein folding kinetics
    • Ganesh B, Somdatta S. Assortative mixing in protein contact networks and protein folding kinetics. Bioinformatics 2007, 23:1760-1767.
    • (2007) Bioinformatics , vol.23 , pp. 1760-1767
    • Ganesh, B.1    Somdatta, S.2
  • 14
    • 84873132053 scopus 로고    scopus 로고
    • CMView 0.9.6 - Protein contact map visualization and analysis. Available at:(Accessed December 2010).
    • CMView 0.9.6 - Protein contact map visualization and analysis. Available at: http://www.bioinformatics.org/cmview/download.html. (Accessed December 2010).
  • 15
    • 84873151386 scopus 로고    scopus 로고
    • DSSP. Available at:. (Accessed December 2010).
    • DSSP. Available at: http://swift.cmbi.ru.nl/gv/dssp/. (Accessed December 2010).
  • 16
    • 36949013631 scopus 로고    scopus 로고
    • Support vector machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs
    • Shamim MTA, Anwaruddin M, Nagarajaram HA. Support vector machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs. Bioinformatics 2007, 23:3320-3327.
    • (2007) Bioinformatics , vol.23 , pp. 3320-3327
    • Shamim, M.T.A.1    Anwaruddin, M.2    Nagarajaram, H.A.3
  • 17
    • 33748419615 scopus 로고    scopus 로고
    • A novel ensemble of classifiers for protein fold recognition
    • Nanni L. A novel ensemble of classifiers for protein fold recognition. Neurocomputing 2006, 69:2434-2437.
    • (2006) Neurocomputing , vol.69 , pp. 2434-2437
    • Nanni, L.1
  • 19
    • 25644459607 scopus 로고    scopus 로고
    • MIT Press, Prentice-Hall of India, Eastern Economy Edition series
    • Alpaydin E. Introduction to Machine Learning. MIT Press, Prentice-Hall of India, Eastern Economy Edition series; 2005.
    • (2005) Introduction to Machine Learning
    • Alpaydin, E.1
  • 21
    • 84873181195 scopus 로고    scopus 로고
    • Weka 3: Data Mining Software in Java. Available at:. (Accessed March 2010)
    • Weka 3: Data Mining Software in Java. Available at: http://www.cs.waikato.ac.nz/ml/weka/. (Accessed March 2010).
  • 22
    • 0035014847 scopus 로고    scopus 로고
    • Multi-class proteing fold recognition using support vector machines and neural networks
    • Ding CHQ, Dubchak I. Multi-class proteing fold recognition using support vector machines and neural networks. Bioinformatics 2001, 17:349-358.
    • (2001) Bioinformatics , vol.17 , pp. 349-358
    • Ding, C.H.Q.1    Dubchak, I.2
  • 23
    • 0141524060 scopus 로고    scopus 로고
    • A consensus view of fold space: combining SCOP, CATH, and the Dali domain dictionary
    • Day R, Beck DAC, Armen RS, Daggett V. A consensus view of fold space: combining SCOP, CATH, and the Dali domain dictionary. Protein Sci 2003, 12:2150-2160.
    • (2003) Protein Sci , vol.12 , pp. 2150-2160
    • Day, R.1    Beck, D.A.C.2    Armen, R.S.3    Daggett, V.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.