Microbispora hainanensis sp. nov., isolated from rhizosphere soil of Excoecaria agallocha in a mangrove

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 10, 2012, Pages 2430-2434

  Xu, Xiao Xiong ^a,b   Wang, Hai Long ^a,c   Lin, Hai Peng ^a   Wang, Cheng ^a   Qu, Zhi ^a   Xie, Qing Yi ^a   Ruan, Ji Sheng ^a   Hong, Kui ^a,d  

^a INSTITUTE OF TROPICAL BIOSCIENCE AND BIOTECHNOLOGY   (China)

^b Qiongzhou University   (Macao)

^c FUJIAN INSTITUTE OF MICROBIOLOGY   (China)

^d WUHAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CARDIOLIPIN; DIAMINOPIMELIC ACID; GLUCOSAMINE; MENAQUINONE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLINOSITOL MANNOSIDE; PHOSPHOLIPID; UNCLASSIFIED DRUG;

ACTINOBACTERIA; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHINA; EXCOECARIA AGALLOCHA; GC RICH SEQUENCE; GENE SEQUENCE; GENOTYPE; MANGROVE; MICROBISPORA HAINANENSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; RNA GENE; SEQUENCE ANALYSIS;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; DIAMINOPIMELIC ACID; DNA, BACTERIAL; EUPHORBIACEAE; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHOSPHOLIPIDS; PHYLOGENY; RHIZOSPHERE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

EXCOECARIA AGALLOCHA; MICROBISPORA; MICROBISPORA CORALLINA;

EID: 84859091201     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.037267-0     Document Type: Article

References (34)

1. Arai, T. (1975). Culture Media for Actinomycetes. Tokyo: The Society for Actinomycetes Japan.
2. Boondaeng, A., Ishida, Y., Tamura, T., Tokuyama, S. & Kitpreechavanich, V. (2009). Microbispora siamensis sp. nov., a thermotolerant actinomycete isolated from soil. Int J Syst Evol Microbiol 59, 3136-3139.
3. Chun, J., Lee, J. H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
4. Cross, T. (1974). Genus V. Microbispora Nonomura and Ohara 1957, 307. In Bergey's Manual of Determinative Bacteriology, 8th edn, pp. 859-861. Edited by R. E. Buchanan & N. E. Gibbons. Baltimore: The Williams & Wilkins Co.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Goodfellow, M., Kumar, Y., Labeda, D. P. & Sembiring, L. (2007). The Streptomyces violaceusniger clade: a home for Streptomycetes with rugose ornamented spores. Antonie van Leeuwenhoek 92, 173-199.
7. Kelly, K. L. (1964). Inter-Society Color Council-National Bureau of Standards Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
8. Kluge, A. G. & Farris, F. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
9. Kroppenstedt, R. M., Stackebrandt, E. & Goodfellow, M. (1990). Taxonomic revision of the actinomycete genera Actinomadura and Microtetraspora. Syst Appl Microbiol 13, 148-160.
10. Lechevalier, H. A. (1965). Priority of the generic name Microbispora over Waksmania and Thermopolyspora. International Bulletin of Bacteriological Nomenclature and Taxonomy 15, 139-142.
11. Lechevalier, M. P. & Lechevalier, H. A. (1980). The chemotaxonomy of actinomycetes. In Actinomycete Taxonomy, Special Publication 6, pp. 227-291. Edited by A. Dietz & D. W. Thayer. Arlington, VA: Society of Industrial Microbiology.
12. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
13. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. K. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
14. Miyadoh, S., Tohyama, H., Amano, S., Shomura, T. & Niida, T. (1985). Microbispora viridis, a new species of Actinomycetales. Int J Syst Bacteriol 35, 281-284.
15. Miyadoh, S., Amano, S., Tohyama, H. & Shomura, T. (1990). A taxonomic review of the genus Microbispora and a proposal to transfer two species to the genus Actinomadura and to combine ten species into Microbispora rosea. J Gen Microbiol 136, 1905-1913.
16. Nakajima, Y., Kitpreechavanich, V., Suzuki, K. & Kudo, T. (1999). Microbispora corallina sp. nov., a new species of the genus Microbispora isolated from Thai soil. Int J Syst Bacteriol 49, 1761-1767.
17. Nonomura, H. & Ohara, Y. (1957). Distribution of actinomycetes in soil. II. Microbispora, a new genus of the Streptomycetaceae. J Ferment Technol 35, 307-311.
18. Nonomura, H. & Ohara, Y. (1960). Distribution of the actinomycetes in soil. IV. The isolation and classification of the genus Microbispora. J Ferment Technol 38, 401-405.
19. Nonomura, H. & Ohara, Y. (1969). Distribution of actinomycetes in soil. VII. A culture method effective for both preferential isolation and enumeration of Microbispora and Streptosporangium strains in soil. (Part 2). Classification of the isolates. J Ferment Technol 47, 701-709.
20. Nonomura, H. & Ohara, Y. (1971). Distribution of the actinomycetes in soil. IX. New species of the genus Microbispora and Microtetraspora and their isolation methods. J Ferment Technol 49, 887-894.
21. Oliver, J. D. & Colwell, R. R. (1973). Extractable lipids of gramnegative marine bacteria: fatty-acid composition. Int J Syst Bacteriol 23, 442-458.
22. Pospiech, A. & Neumann, B. (1995). A versatile quick-prep of genomic DNA from gram-positive bacteria. Trends Genet 11, 217-218.
23. Rao, V. A., Prabhu, K. K., Sridhar, B. P., Venkateswarlu, A. & Actor, P. (1987). Two new species of Microbispora from Indian soils: Microbispora karnatakensis sp. nov. and Microbispora indica sp. nov. Int J Syst Bacteriol 37, 181-185.
24. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
25. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. Technical Note 101. Newark, DE: Microbial ID.
26. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
27. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
28. Wang, Y., Zhang, Z. & Ruan, J. (1996). A proposal to transfer Microbispora bispora (Lechevalier 1965) to a new genus, Thermobispora gen. nov., as Thermobispora bispora comb. nov. Int J Syst Bacteriol 46, 933-938.
29. Wang, C., Xu, X. X., Qu, Z., Wang, H. L., Lin, H. P., Xie, Q. Y., Ruan, J. S. & Hong, K. (2011a). Micromonospora rhizosphaerae sp. nov., isolated from mangrove rhizosphere soil. Int J Syst Evol Microbiol 61, 320-324.
30. Wang, F., Xu, X. X., Qu, Z., Wang, C., Lin, H. P., Xie, Q. Y., Ruan, J. S., Sun, M. & Hong, K. (2011b). Nonomuraea wenchangensis sp. nov., isolated from mangrove rhizosphere soil. Int J Syst Evol Microbiol 61, 1304-1308.
31. Williams, S. T. & Cross, T. (1971). Actinomycetes. In Methods in Microbiology, vol. 4, pp. 295-334. Edited by C. Booth. London: Academic Press.
32. Williams, S. T., Goodfellow, M., Alderson, G., Wellington, E. M. H., Sneath, P. H. A. & Sackin, M. J. (1983). Numerical classification of Streptomyces and related genera. J Gen Microbiol 129, 1743-1813.
33. Xu, X. X., Lin, H. P., Ruan, J. S. & Hong, K. (2009). [Selective Isolation of Microbispora from Rhizhosphere Soil of Mangrove Plants]. Microbiology 32, 1299-1304. (in Chinese).
34. Zhang, Z., Wang, Y. & Ruan, J. (1998). Reclassification of Thermomonospora and Microtetraspora. Int J Syst Bacteriol 48, 411-422.