-
1
-
-
0036319711
-
Molecular epidemiology of HIV-1 genetic forms and its significance for vaccine development and therapy
-
Review
-
Thomson MM, Pérez-Alvarez L, Nájera R, (2002) Molecular epidemiology of HIV-1 genetic forms and its significance for vaccine development and therapy. Lancet Infect Dis 2: 461-71 Review.
-
(2002)
Lancet Infect Dis
, vol.2
, pp. 461-471
-
-
Thomson, M.M.1
Pérez-Alvarez, L.2
Nájera, R.3
-
2
-
-
77957045363
-
Genetic diversity among human immunodeficiency virus-1 non-B subtypes in viral load and drug resistance assays
-
Review
-
Peeters M, Aghokeng AF, Delaporte E, (2010) Genetic diversity among human immunodeficiency virus-1 non-B subtypes in viral load and drug resistance assays. Clin Microbiol Infect 16: 1525-31 Review.
-
(2010)
Clin Microbiol Infect
, vol.16
, pp. 1525-1531
-
-
Peeters, M.1
Aghokeng, A.F.2
Delaporte, E.3
-
3
-
-
79952923201
-
Current progress in the development of a prophylactic vaccine for HIV-1
-
Review
-
Gamble LJ, Matthews QL, (2010) Current progress in the development of a prophylactic vaccine for HIV-1. Drug Des Devel Ther 5: 9-26 Review.
-
(2010)
Drug Des Devel Ther
, vol.5
, pp. 9-26
-
-
Gamble, L.J.1
Matthews, Q.L.2
-
4
-
-
78650235515
-
Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease
-
Review
-
Tebit DM, Arts EJ, (2011) Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease. Lancet Infect Dis 11: 45-56 Review.
-
(2011)
Lancet Infect Dis
, vol.11
, pp. 45-56
-
-
Tebit, D.M.1
Arts, E.J.2
-
5
-
-
0033755804
-
Unprecedented degree of human immunodeficiency virus type 1 (HIV-1) group M genetic diversity in the Democratic Republic of Congo suggests that the HIV-1 pandemic originated in Central Africa
-
Vidal N, Peeters M, Mulanga-Kabeya C, Nzilambi N, Robertson D, et al. (2000) Unprecedented degree of human immunodeficiency virus type 1 (HIV-1) group M genetic diversity in the Democratic Republic of Congo suggests that the HIV-1 pandemic originated in Central Africa. J Virol 74: 10498-507.
-
(2000)
J Virol
, vol.74
, pp. 10498-10507
-
-
Vidal, N.1
Peeters, M.2
Mulanga-Kabeya, C.3
Nzilambi, N.4
Robertson, D.5
-
6
-
-
0035953538
-
Human immunodeficiency virus. Phylogeny and the origin of HIV-1
-
Rambaut A, Robertson DL, Pybus OG, Peeters M, Holmes EC, (2001) Human immunodeficiency virus. Phylogeny and the origin of HIV-1. Nature 410: 1047-8.
-
(2001)
Nature
, vol.410
, pp. 1047-1048
-
-
Rambaut, A.1
Robertson, D.L.2
Pybus, O.G.3
Peeters, M.4
Holmes, E.C.5
-
7
-
-
53349127137
-
Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960
-
Worobey M, Gemmel M, Teuwen DE, Haselkorn T, Kunstman K, et al. (2008) Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960. Nature 455: 661-4.
-
(2008)
Nature
, vol.455
, pp. 661-664
-
-
Worobey, M.1
Gemmel, M.2
Teuwen, D.E.3
Haselkorn, T.4
Kunstman, K.5
-
8
-
-
79952414942
-
Global trends in molecular epidemiology of HIV-1 during 2000-2007
-
WHO-UNAIDS Network for HIV Isolation and Characterisation
-
Hemelaar J, Gouws E, Ghys PD, Osmanov S, WHO-UNAIDS Network for HIV Isolation and Characterisation (2011) Global trends in molecular epidemiology of HIV-1 during 2000-2007. AIDS 25: 679-89.
-
(2011)
AIDS
, vol.25
, pp. 679-689
-
-
Hemelaar, J.1
Gouws, E.2
Ghys, P.D.3
Osmanov, S.4
-
9
-
-
0022336125
-
Serological evidence for virus related to simian T-lymphotropic retrovirus III in residents of west Africa
-
Barin F, M'Boup S, Denis F, Kanki P, Allan JS, et al. (1985) Serological evidence for virus related to simian T-lymphotropic retrovirus III in residents of west Africa. Lancet 2: 1387-9.
-
(1985)
Lancet
, vol.2
, pp. 1387-1389
-
-
Barin, F.1
M'Boup, S.2
Denis, F.3
Kanki, P.4
Allan, J.S.5
-
10
-
-
35548980508
-
Twenty years of prospective molecular epidemiology in Senegal: changes in HIV diversity
-
Hamel DJ, Sankalé JL, Eisen G, Meloni ST, Mullins C, et al. (2007) Twenty years of prospective molecular epidemiology in Senegal: changes in HIV diversity. AIDS Res Hum Retroviruses 23: 1189-96.
-
(2007)
AIDS Res Hum Retroviruses
, vol.23
, pp. 1189-1196
-
-
Hamel, D.J.1
Sankalé, J.L.2
Eisen, G.3
Meloni, S.T.4
Mullins, C.5
-
11
-
-
84859084977
-
UNAIDS website
-
Available:. Accessed 2011 Aug 23
-
UNAIDS website. Available: www.unaids.org/en/regionscountries/countries/senegal/. Accessed 2011 Aug 23.
-
-
-
-
12
-
-
0034630180
-
Identification of all HIV type 1 group M subtypes in Senegal, a country with low and stable seroprevalence
-
Toure-Kane C, Montavon C, Faye MA, Gueye PM, Sow PS, et al. (2000) Identification of all HIV type 1 group M subtypes in Senegal, a country with low and stable seroprevalence. AIDS Res Hum Retroviruses 16: 603-9.
-
(2000)
AIDS Res Hum Retroviruses
, vol.16
, pp. 603-609
-
-
Toure-Kane, C.1
Montavon, C.2
Faye, M.A.3
Gueye, P.M.4
Sow, P.S.5
-
13
-
-
71949100970
-
Low prevalence of HIV type 1 drug resistance mutations in untreated, recently infected patients from Burkina Faso, Côte d'Ivoire, Senegal, Thailand, and Vietnam: the ANRS 12134 study
-
Ayouba A, Lien TT, Nouhin J, Vergne L, Aghokeng AF, et al. (2009) Low prevalence of HIV type 1 drug resistance mutations in untreated, recently infected patients from Burkina Faso, Côte d'Ivoire, Senegal, Thailand, and Vietnam: the ANRS 12134 study. AIDS Res Hum Retroviruses 25: 1193-6.
-
(2009)
AIDS Res Hum Retroviruses
, vol.25
, pp. 1193-1196
-
-
Ayouba, A.1
Lien, T.T.2
Nouhin, J.3
Vergne, L.4
Aghokeng, A.F.5
-
14
-
-
77958165408
-
Antiretroviral drug resistance mutations in antiretroviral-naive patients from Senegal
-
Diop-Ndiaye H, Toure-Kane C, Leye N, Ngom-Gueye NF, Montavon C, et al. (2010) Antiretroviral drug resistance mutations in antiretroviral-naive patients from Senegal. AIDS Res Hum Retroviruses 26: 1133-8.
-
(2010)
AIDS Res Hum Retroviruses
, vol.26
, pp. 1133-1138
-
-
Diop-Ndiaye, H.1
Toure-Kane, C.2
Leye, N.3
Ngom-Gueye, N.F.4
Montavon, C.5
-
15
-
-
70349653901
-
Surprisingly high prevalence of subtype C and specific HIV-1 subtype/CRF distribution in men having sex with men in Senegal
-
Ndiaye HD, Toure-Kane C, Vidal N, Niama FR, Niang-Diallo PA, et al. (2009) Surprisingly high prevalence of subtype C and specific HIV-1 subtype/CRF distribution in men having sex with men in Senegal. J Acquir Immune Defic Syndr 52: 249-52.
-
(2009)
J Acquir Immune Defic Syndr
, vol.52
, pp. 249-252
-
-
Ndiaye, H.D.1
Toure-Kane, C.2
Vidal, N.3
Niama, F.R.4
Niang-Diallo, P.A.5
-
16
-
-
27944446919
-
HIV-1 subtype C dissemination in southern Brazil
-
Soares EA, Martinez AM, Souza TM, Santos AF, Da Hora V, et al. (2005) HIV-1 subtype C dissemination in southern Brazil. AIDS 19 (Suppl 4S81)-86.
-
(2005)
AIDS
, vol.19
, Issue.SUPPL. 4S81
-
-
Soares, E.A.1
Martinez, A.M.2
Souza, T.M.3
Santos, A.F.4
Da Hora, V.5
-
17
-
-
27944480454
-
HIV infection and sexually transmitted infections among men who have sex with men in Senegal
-
Wade AS, Kane CT, Diallo PAN, Diop AK, Gueye K, et al. (2005) HIV infection and sexually transmitted infections among men who have sex with men in Senegal. AIDS 19: 2133-2140.
-
(2005)
AIDS
, vol.19
, pp. 2133-2140
-
-
Wade, A.S.1
Kane, C.T.2
Diallo, P.A.N.3
Diop, A.K.4
Gueye, K.5
-
18
-
-
79956193969
-
Phylogenetic structure in African HIV-1 subtype C revealed by selective sequential pruning
-
Thomson MM, Fernández-García A, (2011) Phylogenetic structure in African HIV-1 subtype C revealed by selective sequential pruning. Virology 415: 30-8.
-
(2011)
Virology
, vol.415
, pp. 30-38
-
-
Thomson, M.M.1
Fernández-García, A.2
-
19
-
-
53549119677
-
On the origin of HIV-1 subtype C in South America
-
Fontella R, Soares MA, Schrago CG, (2008) On the origin of HIV-1 subtype C in South America. AIDS 22: 2001-11.
-
(2008)
AIDS
, vol.22
, pp. 2001-2011
-
-
Fontella, R.1
Soares, M.A.2
Schrago, C.G.3
-
20
-
-
53549104131
-
Origin and evolutionary history of HIV-1 subtype C in Brazil
-
Bello G, Passaes CP, Guimarães ML, Lorete RS, Matos Almeida SE, et al. (2008) Origin and evolutionary history of HIV-1 subtype C in Brazil. AIDS 22: 1993-2000.
-
(2008)
AIDS
, vol.22
, pp. 1993-2000
-
-
Bello, G.1
Passaes, C.P.2
Guimarães, M.L.3
Lorete, R.S.4
Matos Almeida, S.E.5
-
21
-
-
77949517192
-
The HIV-1 subtype C epidemic in South America is linked to the United Kingdom
-
UK Collaborative Group on HIV Drug Resistance
-
de Oliveira T, Pillay D, Gifford RJ, UK Collaborative Group on HIV Drug Resistance (2010) The HIV-1 subtype C epidemic in South America is linked to the United Kingdom. PLoS One 5 (2): e9311.
-
(2010)
PLoS One
, vol.5
, Issue.2
-
-
de Oliveira, T.1
Pillay, D.2
Gifford, R.J.3
-
22
-
-
79959294130
-
High-resolution phylogenetics and phylogeography of human immunodeficiency virus type 1 subtype C epidemic in South America
-
Véras NM, Gray RR, Brígido LF, Rodrigues R, Salemi M, (2011) High-resolution phylogenetics and phylogeography of human immunodeficiency virus type 1 subtype C epidemic in South America. J Gen Virol 92: 1698-709.
-
(2011)
J Gen Virol
, vol.92
, pp. 1698-1709
-
-
Véras, N.M.1
Gray, R.R.2
Brígido, L.F.3
Rodrigues, R.4
Salemi, M.5
-
23
-
-
0027290956
-
Temporary expatriation is related to HIV-1 infection in rural Senegal
-
Kane F, Alary M, Ndoye I, Coll AM, M'boup S, et al. (1993) Temporary expatriation is related to HIV-1 infection in rural Senegal. AIDS 9: 1261-5.
-
(1993)
AIDS
, vol.9
, pp. 1261-1265
-
-
Kane, F.1
Alary, M.2
Ndoye, I.3
Coll, A.M.4
M'boup, S.5
-
24
-
-
0031299742
-
Virology of HIV-1 and HIV-2: implications for Africa
-
Kanki PJ, Peeters M, Gueye-Ndiaye A, (1997) Virology of HIV-1 and HIV-2: implications for Africa. AIDS 11 (Suppl B): S33-4.
-
(1997)
AIDS
, vol.11
, Issue.SUPPL. B
-
-
Kanki, P.J.1
Peeters, M.2
Gueye-Ndiaye, A.3
-
25
-
-
0032906836
-
Human immunodeficiency virus type 1 subtypes differ in disease progression
-
Kanki PJ, Hamel DJ, Sankalé JL, Hsieh C, Thior I, et al. (1999) Human immunodeficiency virus type 1 subtypes differ in disease progression. J Infect Dis 179: 68-73.
-
(1999)
J Infect Dis
, vol.179
, pp. 68-73
-
-
Kanki, P.J.1
Hamel, D.J.2
Sankalé, J.L.3
Hsieh, C.4
Thior, I.5
-
26
-
-
77953913628
-
Chronology and evolution of the HIV-1 subtype C epidemic in Ethiopia
-
Tully DC, Wood C, (2010) Chronology and evolution of the HIV-1 subtype C epidemic in Ethiopia. AIDS 24: 1577-82.
-
(2010)
AIDS
, vol.24
, pp. 1577-1582
-
-
Tully, D.C.1
Wood, C.2
-
27
-
-
72949104925
-
Evolution and molecular epidemiology of subtype C HIV-1 in Zimbabwe
-
Dalai SC, de Oliveira T, Harkins GW, Kassaye SG, Lint J, et al. (2009) Evolution and molecular epidemiology of subtype C HIV-1 in Zimbabwe. AIDS 23: 2523-32.
-
(2009)
AIDS
, vol.23
, pp. 2523-2532
-
-
Dalai, S.C.1
de Oliveira, T.2
Harkins, G.W.3
Kassaye, S.G.4
Lint, J.5
-
28
-
-
4544289290
-
Timing and reconstruction of the most recent common ancestor of the subtype C clade of human immunodeficiency virus type 1
-
Travers SA, Clewley JP, Glynn JR, Fine PE, Crampin AC, et al. (2004) Timing and reconstruction of the most recent common ancestor of the subtype C clade of human immunodeficiency virus type 1. J Virol 78: 10501-6.
-
(2004)
J Virol
, vol.78
, pp. 10501-10506
-
-
Travers, S.A.1
Clewley, J.P.2
Glynn, J.R.3
Fine, P.E.4
Crampin, A.C.5
-
29
-
-
77953609218
-
Sexual risk behaviour for transmission of HIV in men who have sex with men: recent findings and potential interventions
-
Review
-
McDaid LM, Hart GJ, (2010) Sexual risk behaviour for transmission of HIV in men who have sex with men: recent findings and potential interventions. Curr Opin HIV AIDS 5: 311-5 Review.
-
(2010)
Curr Opin HIV AIDS
, vol.5
, pp. 311-315
-
-
McDaid, L.M.1
Hart, G.J.2
-
30
-
-
66149154716
-
CCR5-and CXCR4-tropic subtype C human immunodeficiency virus type 1 isolates have a lower level of pathogenic fitness than other dominant group M subtypes: implications for the epidemic,
-
Abraha A, Nankya IL, Gibson R, Demers K, Tebit DM, et al. (2009) CCR5-and CXCR4-tropic subtype C human immunodeficiency virus type 1 isolates have a lower level of pathogenic fitness than other dominant group M subtypes: implications for the epidemic, J Virol 83: 5592-5605.
-
(2009)
J Virol
, vol.83
, pp. 5592-5605
-
-
Abraha, A.1
Nankya, I.L.2
Gibson, R.3
Demers, K.4
Tebit, D.M.5
-
31
-
-
0037223706
-
Comparing the ex vivo fitness of CCR5-tropic human immunodeficiency virus type 1 isolates of subtypes B and C
-
Ball SC, Abraha A, Collins KR, Marozsan AJ, Baird H, et al. (2003) Comparing the ex vivo fitness of CCR5-tropic human immunodeficiency virus type 1 isolates of subtypes B and C. J Virol 77: 1021-38.
-
(2003)
J Virol
, vol.77
, pp. 1021-1038
-
-
Ball, S.C.1
Abraha, A.2
Collins, K.R.3
Marozsan, A.J.4
Baird, H.5
-
32
-
-
4143100219
-
Preferential in-utero transmission of HIV-1 subtype C as compared to HIV-1 subtype A or D
-
Renjifo B, Gilbert P, Chaplin B, Msamanga G, Mwakagile D, et al. (2004) Preferential in-utero transmission of HIV-1 subtype C as compared to HIV-1 subtype A or D. AIDS 18: 1629-1636.
-
(2004)
AIDS
, vol.18
, pp. 1629-1636
-
-
Renjifo, B.1
Gilbert, P.2
Chaplin, B.3
Msamanga, G.4
Mwakagile, D.5
-
33
-
-
22544479096
-
Subtype C is associated with increased vaginal shedding of HIV-1
-
John-Stewart GC, Nduati RW, Rousseau CM, Mbori-Ngacha DA, Richardson BA, et al. (2005) Subtype C is associated with increased vaginal shedding of HIV-1. J Infect Dis 192: 492-496.
-
(2005)
J Infect Dis
, vol.192
, pp. 492-496
-
-
John-Stewart, G.C.1
Nduati, R.W.2
Rousseau, C.M.3
Mbori-Ngacha, D.A.4
Richardson, B.A.5
-
34
-
-
71049159978
-
Differences in resistance mutations among HIV-1 non-subtype B infections: A systematic review of evidence (1996-2008)
-
Martinez-Cajas JL, Pai NP, Klein MB, Wainberg MA, (2009) Differences in resistance mutations among HIV-1 non-subtype B infections: A systematic review of evidence (1996-2008). J Int AIDS Soc 12: 11.
-
(2009)
J Int AIDS Soc
, vol.12
, pp. 11
-
-
Martinez-Cajas, J.L.1
Pai, N.P.2
Klein, M.B.3
Wainberg, M.A.4
-
35
-
-
33645084526
-
Genotypic drug resistance interpretation algorithms display high levels of discordance when applied to non-B strains from HIV-1 naive and treated patients
-
Vergne L, Snoeck J, Aghokeng A, Maes B, Valea D, et al. (2006) Genotypic drug resistance interpretation algorithms display high levels of discordance when applied to non-B strains from HIV-1 naive and treated patients. FEMS Immunol Med Microbiol 46: 53-62.
-
(2006)
FEMS Immunol Med Microbiol
, vol.46
, pp. 53-62
-
-
Vergne, L.1
Snoeck, J.2
Aghokeng, A.3
Maes, B.4
Valea, D.5
-
36
-
-
31944440917
-
Discordances between interpretation algorithms for genotypic resistance to protease and reverse transcriptase inhibitors of human immunodeficiency virus are subtype dependent
-
Snoeck J, Kantor R, Shafer RW, Van Laethem K, Deforche K, et al. (2006) Discordances between interpretation algorithms for genotypic resistance to protease and reverse transcriptase inhibitors of human immunodeficiency virus are subtype dependent. Antimicrob Agents Chemother 50: 694-701.
-
(2006)
Antimicrob Agents Chemother
, vol.50
, pp. 694-701
-
-
Snoeck, J.1
Kantor, R.2
Shafer, R.W.3
van Laethem, K.4
Deforche, K.5
-
37
-
-
0032946954
-
Subtypes of human immunodeficiency virus type 1 and disease stage among women in Nairobi, Kenya
-
Neilson JR, John GC, Carr JK, Lewis P, Kreiss JK, et al. (1999) Subtypes of human immunodeficiency virus type 1 and disease stage among women in Nairobi, Kenya. J Virol 73: 4393-4403.
-
(1999)
J Virol
, vol.73
, pp. 4393-4403
-
-
Neilson, J.R.1
John, G.C.2
Carr, J.K.3
Lewis, P.4
Kreiss, J.K.5
-
38
-
-
47249109877
-
The World Health Organization's global strategy for prevention and assessment of HIV drug resistance
-
Bennett DE, Bertagnolio S, Sutherland D, Gilks CF, (2008) The World Health Organization's global strategy for prevention and assessment of HIV drug resistance. Antivir Ther 13 (Suppl 2): 1-13.
-
(2008)
Antivir Ther
, vol.13
, Issue.SUPPL. 2
, pp. 1-13
-
-
Bennett, D.E.1
Bertagnolio, S.2
Sutherland, D.3
Gilks, C.F.4
-
39
-
-
27544496497
-
An automated genotyping system for analysis of HIV-1 and other microbial sequences
-
de Oliveira T, Deforche K, Cassol S, Salminen M, Paraskevis D, et al. (2005) An automated genotyping system for analysis of HIV-1 and other microbial sequences. Bioinformatics 21: 3797-800.
-
(2005)
Bioinformatics
, vol.21
, pp. 3797-3800
-
-
de Oliveira, T.1
Deforche, K.2
Cassol, S.3
Salminen, M.4
Paraskevis, D.5
-
40
-
-
67849130553
-
Standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences
-
Alcantara LC, Cassol S, Libin P, Deforche K, Pybus OG, et al. (2009) Standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences. Nucleic Acids Res 37: 634-42.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 634-642
-
-
Alcantara, L.C.1
Cassol, S.2
Libin, P.3
Deforche, K.4
Pybus, O.G.5
-
41
-
-
33747771765
-
HIV-1 drug-resistance mutations among newly diagnosed patients before scaling-up programmes in Burkina Faso and Cameroon
-
Vergne L, Diagbouga S, Kouanfack C, Aghokeng A, Butel C, et al. (2006) HIV-1 drug-resistance mutations among newly diagnosed patients before scaling-up programmes in Burkina Faso and Cameroon. Antivir Ther 11: 575-9.
-
(2006)
Antivir Ther
, vol.11
, pp. 575-579
-
-
Vergne, L.1
Diagbouga, S.2
Kouanfack, C.3
Aghokeng, A.4
Butel, C.5
-
42
-
-
0037100671
-
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh K, Misawa K, Kuma K, Miyata T, (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30: 3059-3066.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
43
-
-
13744252890
-
MAFFT version 5: improvement in accuracy of multiple sequence alignment
-
Katoh K, Kuma K, Toh H, Miyata T, (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33: 511-8.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.2
Toh, H.3
Miyata, T.4
-
44
-
-
79957613599
-
MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 28: 2731-9.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
-
45
-
-
62749200513
-
Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update
-
Bennett DE, Camacho RJ, Otelea D, Kuritzkes DR, Fleury H, et al. (2009) Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update. PLoS One pp. e4724.
-
(2009)
PLoS One
-
-
Bennett, D.E.1
Camacho, R.J.2
Otelea, D.3
Kuritzkes, D.R.4
Fleury, H.5
-
46
-
-
0034988391
-
Selecting models of nucleotide substitution: an application to human immunodeficiency virus 1 (HIV-1)
-
Posada D, Crandall KA, (2001) Selecting models of nucleotide substitution: an application to human immunodeficiency virus 1 (HIV-1). Mol Biol Evol 18: 897-906.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 897-906
-
-
Posada, D.1
Crandall, K.A.2
-
47
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-21.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
-
48
-
-
33745256005
-
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
-
Anisimova M, Gascuel O, (2006) Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. Syst Biol 55: 539-52.
-
(2006)
Syst Biol
, vol.55
, pp. 539-552
-
-
Anisimova, M.1
Gascuel, O.2
-
49
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
50
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
52
-
-
45849122039
-
Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics
-
Minin VN, Bloomquist EW, Suchard MA, (2008) Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Mol Biol Evol 25: 1459-71.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1459-1471
-
-
Minin, V.N.1
Bloomquist, E.W.2
Suchard, M.A.3
-
53
-
-
20944444788
-
Biologic and genetic characterization of a panel of 60 human immunodeficiency virus type 1 isolates, representing clades A, B, C, D, CRF01_AE, and CRF02_AG, for the development and assessment of candidate vaccines
-
Brown BK, Darden JM, Tovanabutra S, Oblander T, Frost J, et al. (2005) Biologic and genetic characterization of a panel of 60 human immunodeficiency virus type 1 isolates, representing clades A, B, C, D, CRF01_AE, and CRF02_AG, for the development and assessment of candidate vaccines. J Virol 79: 6089-101.
-
(2005)
J Virol
, vol.79
, pp. 6089-6101
-
-
Brown, B.K.1
Darden, J.M.2
Tovanabutra, S.3
Oblander, T.4
Frost, J.5
-
54
-
-
0041627405
-
Low rate of genotypic HIV-1 drug-resistant strains in the Senegalese government initiative of access to antiretroviral therapy
-
Vergne L, Kane CT, Laurent C, Diakhaté N, Gueye NF, et al. (2003) Low rate of genotypic HIV-1 drug-resistant strains in the Senegalese government initiative of access to antiretroviral therapy. AIDS 17 (Suppl 3): S31-8.
-
(2003)
AIDS
, vol.17
, Issue.SUPPL. 3
-
-
Vergne, L.1
Kane, C.T.2
Laurent, C.3
Diakhaté, N.4
Gueye, N.F.5
-
55
-
-
0034460604
-
Genetic diversity of protease and reverse transcriptase sequences in non-subtype-B human immunodeficiency virus type 1 strains: evidence of many minor drug resistance mutations in treatment-naïve patients
-
Vergne L, Peeters M, Mpoudi-Ngole E, Bourgeois A, Liegeois F, et al. (2000) Genetic diversity of protease and reverse transcriptase sequences in non-subtype-B human immunodeficiency virus type 1 strains: evidence of many minor drug resistance mutations in treatment-naïve patients. J Clin Microbiol 38: 3919-25.
-
(2000)
J Clin Microbiol
, vol.38
, pp. 3919-3925
-
-
Vergne, L.1
Peeters, M.2
Mpoudi-Ngole, E.3
Bourgeois, A.4
Liegeois, F.5
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