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Volumn 136, Issue 10, 2012, Pages

Steady-state parameter sensitivity in stochastic modeling via trajectory reweighting

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMICAL NETWORK; BISTABLES; EFFICIENCY IMPROVEMENT; EXACT RESULTS; GENERAL THEORY; PARAMETER SENSITIVITIES; PARAMETER VALUES; SENSITIVITY COEFFICIENT; SIGNALING NETWORKS; STEADY STATE PARAMETER; STOCHASTIC MODELING; STOCHASTIC SIMULATIONS;

EID: 84858964221     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3690092     Document Type: Article
Times cited : (22)

References (24)
  • 2
    • 33645429016 scopus 로고
    • 10.1021/j100540a008
    • D. T. Gillespie, J. Phys. Chem. 81, 2340 (1977). 10.1021/j100540a008
    • (1977) J. Phys. Chem. , vol.81 , pp. 2340
    • Gillespie, D.T.1
  • 4
    • 33846435732 scopus 로고    scopus 로고
    • Spectral methods for parametric sensitivity in stochastic dynamical systems
    • DOI 10.1529/biophysj.106.085084
    • D. Kim, B. J. Debusschere, and H. N. Najm, Biophys. J. 92, 379 (2007). 10.1529/biophysj.106.085084 (Pubitemid 46145772)
    • (2007) Biophysical Journal , vol.92 , Issue.2 , pp. 379-393
    • Kim, D.1    Debusschere, B.J.2    Najm, H.N.3
  • 7
    • 34548681436 scopus 로고    scopus 로고
    • Path ensembles and path sampling in nonequilibrium stochastic systems
    • DOI 10.1063/1.2775439
    • B. Harland and S. X. Sun, J. Chem. Phys. 127, 104103 (2007). 10.1063/1.2775439 (Pubitemid 47416067)
    • (2007) Journal of Chemical Physics , vol.127 , Issue.10 , pp. 104103
    • Harland, B.1    Sun, S.X.2
  • 8
  • 11
    • 33746516694 scopus 로고    scopus 로고
    • A hybrid deterministic-stochastic algorithm for modeling cell signaling dynamics in spatially inhomogeneous environments and under the influence of external fields
    • DOI 10.1021/jp056231f
    • D. C. Wylie, Y. Hori, A. R. Dinner, and A. K. Chakraborty, J. Phys. Chem. B 110, 12749 (2006). 10.1021/jp056231f (Pubitemid 44139468)
    • (2006) Journal of Physical Chemistry B , vol.110 , Issue.25 , pp. 12749-12765
    • Wylie, D.C.1    Hori, Y.2    Dinner, A.R.3    Chakraborty, A.K.4
  • 13
    • 33751347484 scopus 로고    scopus 로고
    • The finite state projection algorithm for the solution of the chemical master equation
    • DOI 10.1063/1.2145882, 044104
    • B. Munsky and M. Khammash, J. Chem. Phys. 124, 044104 (2006). 10.1063/1.2145882 (Pubitemid 43166302)
    • (2006) Journal of Chemical Physics , vol.124 , Issue.4 , pp. 1-13
    • Munsky, B.1    Khammash, M.2
  • 14
    • 0346688719 scopus 로고    scopus 로고
    • 10.1016/S0006-3495(04)74085-0
    • M. Santilln and M. C. Mackey, Biophys. J. 86, 75 (2004). 10.1016/S0006-3495(04)74085-0
    • (2004) Biophys. J. , vol.86 , pp. 75
    • Santilln, M.1    MacKey, M.C.2
  • 16
    • 33746869356 scopus 로고    scopus 로고
    • Signal detection, modularity, and the correlation between extrinsic and intrinsic noise in biochemical networks
    • DOI 10.1103/PhysRevLett.97.068102
    • s. This is almost certainly not generally true, and in the present case is likely connected to the fact that the noise in S is uncorrelated with the noise in P, in the sense of S. Tansa-Nicola, P. B. Warren, and P. R. ten Wolde, Phys. Rev. Lett. 97, 068102 (2006). 10.1103/PhysRevLett.97.068102 (Pubitemid 44200572)
    • (2006) Physical Review Letters , vol.97 , Issue.6 , pp. 068102
    • Tanase-Nicola, S.1    Warren, P.B.2    Ten Wolde, P.R.3
  • 17
    • 0034688174 scopus 로고    scopus 로고
    • Construction of a genetic toggle switch in Escherichia coli
    • DOI 10.1038/35002131
    • T. S. Gardner, C. R. Cantor, and J. J. Collins, Nature (London) 403, 339 (2000). 10.1038/35002131 (Pubitemid 30062394)
    • (2000) Nature , vol.403 , Issue.6767 , pp. 339-342
    • Gardner, T.S.1    Cantor, C.R.2    Collins, J.J.3
  • 19
    • 18144425774 scopus 로고    scopus 로고
    • Sampling rare switching events in biochemical networks
    • DOI 10.1103/PhysRevLett.94.018104, 018104
    • R. J. Allen, P. B. Warren, and P. R. ten Wolde, Phys. Rev. Lett. 94, 018104 (2005). 10.1103/PhysRevLett.94.018104 (Pubitemid 40620266)
    • (2005) Physical Review Letters , vol.94 , Issue.1 , pp. 1-4
    • Allen, R.J.1    Warren, P.B.2    Ten Wolde, P.R.3
  • 21
    • 77951683382 scopus 로고    scopus 로고
    • 10.1146/annurev.physchem.012809.103433
    • A. Dickson and A. R. Dinner, Annu. Rev. Phys. Chem. 61, 441 (2010). 10.1146/annurev.physchem.012809.103433
    • (2010) Annu. Rev. Phys. Chem. , vol.61 , pp. 441
    • Dickson, A.1    Dinner, A.R.2
  • 22
    • 84858954451 scopus 로고    scopus 로고
    • See supplementary material at E-JCPSA6-136-007210 for (i) the derivation of Eq. and the extension to higher order derivatives, (ii) exact results for problems with linear propensities, (iii) details of the time stepre-averaging algorithm, and (iv) details of the finite-state projection (FSP) algorithm. The following additional literature is cited in the supplementary material
    • See supplementary material at http://dx.doi.org/10.1063/1.3690092 E-JCPSA6-136-007210 for (i) the derivation of Eq. and the extension to higher order derivatives, (ii) exact results for problems with linear propensities, (iii) details of the time step pre-averaging algorithm, and (iv) details of the finite-state projection (FSP) algorithm. The following additional literature is cited in the supplementary material


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