Short-term fluctuations of sugar beet damping-off by Pythium ultimum in relation to changes in bacterial communities after organic amendments to two soils

Phytopathology

Volumn 102, Issue 4, 2012, Pages 413-420

  He, Miaomiao ^a,b   Tian, Guangming ^a,b   Semenov, Alexander M ^c   Van Bruggen, Ariena H C ^d,e  

^a HANGZHOU NORMAL UNIVERSITY   (China)

^b ZHEJIANG UNIVERSITY   (China)

^c MOSCOW STATE UNIVERSITY   (Russian Federation)

^d WAGENINGEN UNIVERSITY   (Netherlands)

^e UNIVERSITY OF FLORIDA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON DIOXIDE;

ARTICLE; BEET; CHEMISTRY; HOST PATHOGEN INTERACTION; MICROBIOLOGY; PARASITOLOGY; PHYSIOLOGY; PLANT DISEASE; PLANT ROOT; PYTHIUM; SEEDLING; SOIL; TIME;

BETA VULGARIS; CARBON DIOXIDE; HOST-PATHOGEN INTERACTIONS; PLANT DISEASES; PLANT ROOTS; PYTHIUM; SEEDLING; SOIL; SOIL MICROBIOLOGY; TIME FACTORS;

BACTERIA (MICROORGANISMS); BETA VULGARIS SUBSP. VULGARIS; PYTHIUM; PYTHIUM ULTIMUM;

EID: 84858962140     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-07-11-0189     Document Type: Article

References (46)

1. Arias, M. E., Gonzalez-Perez, J. A., Gonzalez-Vila, F. J., and Ball, A. S. 2005. Soil health-a new challenge for microbiologists and chemists. Int. MicroBiol. 8:13-21. (Pubitemid 43126751)
2. Bulluck, L. R., III, and Ristaino, J. B. 2002. Effect of synthetic and organic soil fertility amendments on southern blight, soil microbial communities, and yield of processing tomatoes. Phytopathology 92:181-189. (Pubitemid 34128556)
3. Cairns, M. J., and Murray, V. 1994. Rapid silver staining and recovery of PCR products separated on polyacrylamide gels. BioTechniques 17:915-919.
4. Calderón, F. J., Jackson, L. E., Scow, K. M., and Rolston, D. E. 2001. Short-term dynamics of nitrogen, microbial activity, and phospholipid fatty acids after tillage. Soil Sci. Soc. Am. J. 65:118-126. (Pubitemid 32169776)
5. Campbell, C. L., and Madden, L. V. 1990. Page 532 in: Introduction to Plant Disease Epidemiology. Wiley-Interscience, New York.
6. Chen, W., Hoitink, H. A. J., and Madden, L. V. 1988. Microbial activity and biomass in container media for predicting suppressiveness to damping-off caused by Pythium ultimum. Phytopathology 78:1447-1450.
7. Chen, W. D., Hoitink, H. A. J., Schmitthenner, A. F., and Tuovinen, O. H. 1988. The role of microbial activity in suppression of damping-off caused by Pythium ultimum. Phytopathology 78:314-322.
8. Culman, S. W., Duxbury, J. M., Lauren, J. G., and Thies, J. E. 2006. Microbial community response to soil solarization in Nepal's rice-wheat cropping system. Soil Biol. Biochem. 38:3359-3371. (Pubitemid 44573280)
9. Darby, H. M., Stone, A. G., and Dick, R. P. 2006. Compost and manure mediated impacts on soilborne pathogens and soil quality. Soil Sci. Soc. Am. J. 70:347-358.
10. de Vos, O. J., and van Bruggen, A. H. C. 2001. Soil microbial composition as affected by grass-clover mixture incorporation in the soil. ISME 9:17.077.
11. Eichner, C. A., Erb, R. W., Timmis, K. N., and Wagner-Dobler, I. 1999. Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community. Appl. Environ. MicroBiol. 65:102-109. (Pubitemid 29029625)
12. Ellis, R. J., Timms-Wilson, T. M., Beringer, J. E., Rhodes, D., Renwick, A., Stevenson, L., and Bailey, M. J. 1999. Ecological basis for biocontrol of damping-off disease by Pseudomonas fluorescens 54/96. J. Appl. MicroBiol. 87:454-463. (Pubitemid 29479836)
13. Garbeva, P., van Veen, J. A., and van Elsas, J. D. 2004. Assessment of the diversity, and antagonism towards Rhizoctonia solani AG3, of Pseudomonas species in soil from different agricultural regimes. FEMS MicroBiol. Ecol. 47:51-64. (Pubitemid 38368784)
14. Georgakopoulos, D. G., Fiddaman, P., Leifert, C., and Malathrakis, N. E. 2002. Biological control of cucumber and sugar beet damping-off caused by Pythium ultimum with bacterial and Fungal antagonists. J. Appl. MicroBiol. 92:1078-1086. (Pubitemid 34535488)
15. Giuliano, B., Vincenzo, A., Manuela, C, and Felice, S. 2010. Identifying the characteristics of organic soil amendments that suppress soilborne plant diseases. Soil Biol. Biochem. 42:136-144.
16. Gorissen, A., van Overbeek, L. S., and van Elsas, J. D. 2004. Pig slurry reduces the survival of Ralstonia solanacearum biovar 2 in soil. Can. J. MicroBiol. 50:587-593. (Pubitemid 39506788)
17. Grosch, R., Scherwinski, K., Lottmann, J., and Berg, G. 2006. Fungal antagonists of the plant pathogen Rhizoctonia solani: Selection, control efficacy and influence on the indigenous microbial community. Mycol. Res. 110:1464-1474. (Pubitemid 44880690)
18. He, M. M., Ma, W. J., Tian, G. M., Blok, W., Khodzaeva, A., Zelenev, V. V., Semenov, A. M., and van Bruggen, A. H. C. 2010. Daily changes of infections by Pythium ultimum after a nutrient impulse in organic versus conventional soils. Phytopathology 100:593-600.
19. Heuer, H., and Smalla, K. 1997. Application of denaturing gradient gel electrophoresis for studying soil microbial communities. Pages 353-373 in: Modern Soil Microbiology. J. D. van Elzas, J. T. Trevors, and E. M. H. Wellington, eds. Marcel Dekker Inc., New York.
20. Hiddink, G. A., van Bruggen, A. H. C., Termorshuizen, A. J., Raaijmakers J. M., and Semenov, A. V. 2005. Effect of organic management of soils on suppressiveness to Gaeumannomyces graminis var. tritici and its antagonist, Pseudomonas fluorescens. Eur. J. Plant Pathol. 113:417-435. (Pubitemid 43117038)
21. Hjort, K., Lembke, A., Speksnijder, A., Smalla, K., and Jansson, J. K. 2007. Community structure of actively growing bacterial populations in plant pathogen suppressive soil. MicroBiol. Ecol. 53:399-413. (Pubitemid 46716626)
22. Hunter, P. J., Petch, G. M., Calvo-Bado, L. A., Pettitt, T. R., Parsons, N. R., Morgan, J. A., and Whipps, J. M. 2006. Differences in microbial activity and microbial populations of peat associated with suppression of damping-off disease caused by Pythium sylvaticum. Appl. Environ. MicroBiol. 72:6452-6460. (Pubitemid 44582880)
23. Joshi, D., Hooda, K. S., Bhatt, J. C., Mina, B. L., and Gupta, H. S. 2009. Suppressive effects of composts on soil-borne and foliar diseases of French bean in the field in the western Indian Himalayas. Crop Prot. 28:608-615.
24. Kavroulakis, N., Ntougias, S., Besi, M. I., Katsou, P., Damaskinou, A., Ehaliotis, C., Zervakis, G. I., and Papadopoulou, K. K. 2010. Antagonistic bacteria of composted agro-industrial residues exhibit antibiosis against soil-borne Fungal plant pathogens and protection of tomato plants from Fusarium oxysporum f. sp. radicis-lycopersici. Plant Soil 333:233-247.
25. Kozdrój, J., and van Elsas, J. D. 2000. Response of the bacterial community to root exudates in soil polluted with heavy metals assessed by molecular and cultural approaches. Soil Biol. Biochem. 32:1405-1417.
26. Larkin, R. P., Griffin, T. S., and Honeycutt, C. W. 2010. Rotation and cover crop effects on soilborne potato diseases, tuber yield, and soil microbial communities. Plant Dis. 94:1491-1502.
27. Liu, B., Gumpertz, M. L., Hu, S. J., and Ristaino, J. B. 2007. Long-term effects of organic and synthetic soil fertility amendments on soil microbial communities and the development of southern blight. Soil Biol. Biochem. 39:2302-2316. (Pubitemid 46907210)
28. Muyzer, G., De Waal, E. C., and Uitterlinden, A. G., 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes for 16S rRNA. Appl. Environ. MicroBiol. 59:695-700. (Pubitemid 23072343)
29. Pérez-Piqueres, A., Edel-Hermann, V., Alabouvette, C., and Steinberg, C. 2006. Response of soil microbial communities to compost amendments. Soil Biol. Biochem. 38:460-470. (Pubitemid 43234190)
30. Postma, J., Geraats, B. P. J., Pastoor, R., and van Elsas, J. D. 2005. Characterization of the microbial community involved in the suppression of Pythium aphanidermatum in cucumber grown on rockwool. Phytopathology 95:808-818. (Pubitemid 40856535)
31. Postma, J., Schilder, M. T., Bloem, J., and van Leeuwen-Haagsma, W. K. 2008. Soil suppressiveness and functional diversity of the soil microflora in organic farming systems. Soil Biol. Biochem. 40:2394-2406.
32. Pugliese, M., Liu, B. P., Gullino, M. L., and Garibaldi, A. 2008. Selection of antagonists from compost to control soil-borne pathogens. J. Plant Dis. Prot. 115:220-228.
33. Rosado, A. S., Duarte, G. R., Seldin, L., and van Elsas, J. D. 1998. Genetic diversity of nifH gene sequences in Paenibacillus azotofixans strains and soil samples analyzed by denaturing gradient gel electrophoresis of PCR-amplified gene fragments. Appl. Environ. MicroBiol. 64:2770-2779. (Pubitemid 28363140)
34. Santos, I., and Bettiol, W. 2003. Effect of sewage sludge on the rot and seedling damping-off of bean plants caused by Sclerotium rolfsii. Crop Prot. 22:1093-1097. (Pubitemid 37245066)
35. Semenov, A. M., van Bruggen, A. H. C., and Zelenev, V. V. 1999. Moving waves of bacterial populations and total carbon along roots of wheat. MicroBiol. Ecol. 37:116-128. (Pubitemid 29170574)
36. Thuerig, B., Fliessbach, A., Berger, N., Fuchs, J. G., Kraus, N., Mahlberg, N., Nietlispach, B., and Tamm, L. 2009. Re-establishment of suppressiveness to soil-and air-borne diseases by re-inoculation of soil microbial communities. Soil Biol. Biochem. 41:2153-2161.
37. Tiquia, S. M., Lloyd, J., Herms, D. A., Hoitink, H. A. J., and Michel, F. C. 2002. Effects of mulching and fertilization on soil nutrients, microbial activity and rhizosphere bacterial community structure determined by analysis of TRFLPs of PCR-amplified 16S rRNA genes. Appl. Soil Ecol. 21:31-48. (Pubitemid 34780317)
38. van Bruggen, A. H. C., and Semenov, A. M. 1999. A new approach to the search for indicators of root disease suppression. Australas. Plant Pathol. 28:4-10. (Pubitemid 129629165)
39. van Bruggen, A. H. C., Semenov, A. M., van Diepeningen, A. D., de Vos, O. J., and Blok, W. J. 2006. Relation between soil health, wave-like fluctuations in microbial populations, and soil-borne plant disease management. Eur. J. Plant Pathol. 115:105-122. (Pubitemid 43961598)
40. van Bruggen, A. H. C., Semenov, A. M., and Zelenev, V. V. 2002. Wavelike distributions of infections by an introduced and naturally occurring root pathogen along wheat roots. MicroBiol. Ecol. 44:30-38. (Pubitemid 36941084)
41. van Diepeningen, A. D., de Vos, O. J., Zelenev, V. V., Semenov, A. M., and van Bruggen, A. H. C. 2005. DGGE fragments oscillate with or counter to fluctuations in cultivable bacteria along wheat roots. MicroBiol. Ecol. 50:506-517. (Pubitemid 41832716)
42. Veeken, A. H. M., Blok, W. J., Curcia, F., Coenen, G. C. M., Termorshuizen, A. J., and Hamelers, H. V. M. 2005. Improving quality of composted biowaste to enhance disease suppressiveness of compostamended, peat-based potting mixes. Soil Biol. Biochem. 37:2131-2140. (Pubitemid 41531245)
43. Workneh, F., and van Bruggen, A. H. C. 1994. Microbial density, composition, and diversity in organically and conventionally managed rhizosphere soil in relation to suppression of corky root of tomatoes. Appl. Soil Ecol. 1:219-230.
44. Yang, C. H., Crowley, D. E., and Menge, J. A. 2001. 16S rDNA fingerprinting of rhizosphere bacterial communities associated with healthy and Phytophthora infected avocado roots. FEMS MicroBiol. Ecol. 35:129-136. (Pubitemid 32289249)
45. Yin, C. T., Jones, K. L., Peterson, D. E., Garrett, K. A., Hulbert, S. H., Paulitz, T. C., and Timothy, C. 2010. Members of soil bacterial communities sensitive to tillage and crop rotation. Soil Biol. Biochem. 42:2111-2118.
46. Zelenev, V. V., van Bruggen, A. H. C., and Semenov, A. M. 2005. Shortterm wavelike dynamics of bacterial populations in response to nutrient input from fresh plant residues. MicroBiol. Ecol. 49:83-93. (Pubitemid 40747806)