Re-establishment of suppressiveness to soil- and air-borne diseases by re-inoculation of soil microbial communities

Soil Biology and Biochemistry

Volumn 41, Issue 10, 2009, Pages 2153-2161

  Thuerig, Barbara ^a   Fließbach, Andreas ^a   Berger, Nicole ^a   Fuchs, Jacques G ^a   Kraus, Noemy ^a   Mahlberg, Nicole ^a   Nietlispach, Bruno ^a   Tamm, Lucius ^a  

^a RESEARCH INSTITUTE OF ORGANIC AGRICULTURE FIBL   (Switzerland)

Author keywords

Air borne disease; Arabidopsis thaliana; Disease suppression; Hyaloperonospora parasitica; Lepidium sativum; PLFA; Pythium ultimum; Re inoculation; Soil characteristics; Soil microbial communities; Soil borne disease

Indexed keywords

ARABIDOPSIS THALIANA; DISEASE SUPPRESSION; HYALOPERONOSPORA PARASITICA; LEPIDIUM SATIVUM; PLFA; PYTHIUM ULTIMUM; RE-INOCULATION; SOIL CHARACTERISTICS; SOIL MICROBIAL COMMUNITIES;

AGRONOMY; BIOMASS; FATTY ACIDS; FORESTRY; FUMIGATION; HEAT TREATMENT; PATHOGENS; PHOSPHOLIPIDS; PLANTS (BOTANY); RESTORATION; SOCIAL SCIENCES; SOIL SURVEYS;

SOILS;

COMMUNITY STRUCTURE; ENVIRONMENTAL DISTURBANCE; FUNGAL DISEASE; FUNGUS; HERB; HOST-PATHOGEN INTERACTION; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; SOIL MICROORGANISM;

CENTRAL EUROPE; EURASIA; EUROPE; SWITZERLAND; UNITED KINGDOM; WESTERN EUROPE;

ARABIDOPSIS; ARABIDOPSIS THALIANA; HYALOPERONOSPORA PARASITICA; LEPIDIUM SATIVUM; PERONOSPORACEAE; PYTHIUM; PYTHIUM ULTIMUM;

EID: 70349167979     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2009.07.028     Document Type: Article

References (51)

1. Bellamy P.H., Loveland P.J., Bradley R.I., Lark R.M., and Kirk G.J.D. Carbon losses from all soils across England and Wales 1978-2003. Nature 437 (2005) 245-248
2. Bligh E.G., and Dyer W.J. A rapid method of total lipid extraction and purification. Canadian Journal of Biochemistry and Physiology 37 (1959) 911-917
3. Chet I., Harman G.E., and Baker R. Trichoderma hamatum: its hyphal interactions with Rhizoctonia solani and Pythium ultimum. Microbial Ecology 7 (1981) 29-38
4. Cook R.J. Management of resident plant growth-promoting rhizobacteria with the cropping system: a review of experience in the US Pacific Northwest. European Journal of Plant Pathology 119 (2007) 255-264
5. De Meyer G., and Höfte M. Salicylic acid produced by the rhizobacterium Pseudomonas aeruginosa 7NSK2 induces resistance to leaf infection by Botrytis cinerea on bean. Phytopathology 87 (1997) 588-593
6. De Meyer G., Bigirimana J., Elad Y., and Höfte M. Induced systemic resistance in Trichoderma harzianum T39 biocontrol of Botrytis cinerea. European Journal of Plant Pathology 104 (1998) 279-286
7. Esperschütz J., Gattinger A., Mäder P., Schloter M., and Fliessbach A. Response of soil microbial biomass and community structures to conventional and organic farming systems under identical crop rotations. FEMS Microbiology Ecology 61 (2006) 26-37
8. Garbeva P., Van Veen J.A., and Van Elsas J.D. Microbial diversity in soil: selection of microbial populations by plant and soil type and implications for disease suppressiveness. Annual Review of Phytopathology 42 (2004) 243-270
9. Garbeva P., Postma J., Van Veen J.A., and Van Elsas J.D. Effect of above-ground plant species on soil microbial community structure and its impact on suppression of Rhizoctonia solani AG3. Environmental Microbiology 8 (2006) 233-246
10. Haas D., and Défago G. Biological control of soil-borne pathogens by fluorescent pseudomonads. Nature Reviews Microbiology 3 (2005) 307-319
11. Hartmann M., Fliessbach A., Oberholzer H.-R., and Widmer F. Ranking the magnitude of crop and farming system effects on soil microbial biomass and genetic structure of bacterial communities. FEMS Microbiology Ecology 57 (2006) 378-388
12. Höper H., and Alabouvette C. Importance of physical and chemical soil properties in the suppressiveness of soils to plant diseases. European Journal of Soil Biology 32 (1996) 41-58
13. Howell C.R., and Stipanovic R.D. Suppression of Pythium ultimum-induced damping-off of cotton seedlings by Pseudomonas fluorescens and its antibiotic, pyoluteorin. Phytopathology 70 (1980) 712-715
14. Howell C.R., Beier R.C., and Stipanovic R.D. Production of ammonia by Enterobacter cloacae and its possible role in the biological control of Pythium preemergence damping-off by the bacterium. Phytopathology 78 (1988) 1075-1078
15. Howell C.R. Biological control of Pythium damping-off of cotton with seed-coating preparations of Gliocladium virens. Phytopathology 81 (1991) 738-741
16. Hunter P.J., Petch G.M., Calvo-Bado L.A., Pettitt T.R., Parson N.R., Morgan J.A.W., and Whipps J.M. Differences in microbial activity and microbial populations of peat associated with suppression of damping-off disease caused by Pythium sylvaticum. Applied and Environmental Microbiology 72 (2006) 6452-6460
17. Hwang S.F., Chang K.F., Howard R.J., Deneka B.A., and Turnbull G.D. Decrease in incidence of Pythium damping-off of field pea by seed treatment with Bacillus spp. and metalaxyl. Journal of Plant Disease and Protection 103 (1996) 31-41
18. Iavicoli A., Boutet E., Buchala A., and Métraux J.P. Induced systemic resistance in Arabidopsis thaliana in response to root inoculation with Pseudomonas fluorescens CHA0. Molecular Plant-Microbe Interactions 10 (2003) 851-858
19. Ishimoto H., Fukushi Y., and Tahara S. Non-pathogenic Fusarium strains protect the seedlings of Lepidium sativum from Pythium ultimum. Soil Biology and Biochemistry 36 (2004) 409-414
20. Joergensen R.G., and Mueller T. The fumigation extraction method to estimate soil microbial biomass: calibration of the kEC-factor. Soil Biology and Biochemistry 28 (1996) 25-31
21. EN value. Soil Biology and Biochemistry 28 (1996) 33-37
22. Khan S.A., Mulvaney R.L., Ellsworth T.R., and Boast C.W. The myth of nitrogen fertilization for soil carbon sequestration. Journal of Environmental Quality 36 (2007) 1821-1832
23. Kloepper J.E., Rodriguez-Ubana R., Zehnder G.W., Murphy J.F., Sikora E., and Fernandez C. Plant root-bacterial interactions in biological control of soilborne diseases and potential extension to systemic and foliar diseases. Australasian Plant Pathology 28 (1999) 21-26
24. Knudsen I.M.B., Larsen K.M., Jensen D.F., and Hockenhull J. Potential suppressiveness of different field soils to Pythium damping-off of sugar beat. Applied Soil Ecology 21 (2002) 119-129
25. Kowalchuk G., Os G.J., Aartrijk J., and Veen J. Microbial community responses to disease management soil treatments used in flower bulb cultivation. Biology and Fertility of Soils 37 (2003) 55-63
26. Martin G.B., and Hancock J.G. The use of Pythium oligandrum for biological control of preemergence damping-off caused by P. ultimum. Phytopathology 77 (1987) 1013-1020
27. Maurhofer M., Keel C., Schnider U., Voisard C., Haas D., and Défago G. Influence of enhanced antibiotic production in Pseudomonas fluorescens strain CHA0 on its disease suppressive capacity. Phytopathology 82 (1992) 190-195
28. Mazzola M. Assessment and management of soil microbial community structure for disease suppression. Annual Review of Phytopathology 42 (2004) 35-59
29. Menzies J.G. Occurrence and transfer of a biological factor in soil that suppresses potato scab. Phytopathology 49 (1959) 648-652
30. Nelson E.B. Biological control of Pythium seed-rot and pre-emergence damping-off of cotton with Enterobacter cloacae and Erwinia herbicola as seed treatments. Plant Disease 72 (1988) 140-142
31. Pérez-Piqueres A., Edel-Hermann V., Alabouvette C., and Steinberg C. Response of soil microbial communities to compost amendments. Soil Biology and Biochemistry 38 (2006) 460-470
32. Pimentel D., Harvey C., Resosudarmo P., Sinclair K., Kurz D., Mcnair M., Christ S., Shpritz L., Fitton L., Saffouri R., and Blair R. Environmental and economic costs of soil erosion and conservation benefits. Science 267 (1995) 1117-1123
33. Postma J., Schilder M.T., Bloem J., and Van Leeuwen-Haagsma W.K. Soil suppressiveness and functional diversity of the soil microflora in organic farming systems. Soil Biology and Biochemistry 40 (2008) 2394-2406
34. Press C.M., Wilson M., Tuzun S., and Kloepper J.W. Salicylic acid produced by Serratia marcescens 90-166 is not the primary determinant of induced systemic resistance in cucumber or tobacco. Molecular Plant-Microbe Interactions 10 (1997) 761-768
35. Rotenberg D., Cooperband L., and Stone A. Dynamic relationships between soil properties and foliar disease as affected by annual additions of organic amendment to a sandy-soil vegetable production system. Soil Biology and Biochemistry 37 (2005) 1343-1357
36. Ryu C.-M., Hu C.-H., Reddy M.S., and Kloepper J.E. Different signaling pathways of induced resistance by rhizobacteria in Arabidopsis thaliana against two pathovars of Pseudomonas syringae. New Phytologist 160 (2003) 413-420
37. Scher F.M., and Baker R. Mechanism of biological control in a Fusarium-suppressive soil. Phytopathology 70 (1980) 412-417
38. Shipton P.J., Cook R.J., and Sitton J.W. Occurrence and transfer of a biological factor in soil that suppresses take-all of wheat in Eastern Washington. Phytopathology 63 (1973) 511-517
39. Stone A., Vallad G.E., Cooperband L., Rotenberg D., Darby H.M., James R.V., Stevenson W.R., and Goodman R.M. Effect of organic amendments on soilborne and foliar diseases in field-grown snap bean. Plant Disease 87 (2003) 1037-1042
40. Stutz E.W., Défago G., and Kern H. Naturally occurring fluorescent Pseudomonads involved in suppression of black root rot of tobacco. Disease Control and Pest Management 76 (1986) 181-185
41. Tabatabai M.A. Soil enzymes. In: Page A.L., Miller R.H., and Keeney D.R. (Eds). Methods of Soil Analysis, Part 2 Chemical and Microbiological Properties. second ed. vol. 9 (1982), American Society of Agronomy & Soil Science Society of America, Madison, Wisconsin 903-947
42. Tiessen H., Stewart J.W.B., and Bettany J.R. Cultivation effects on the amounts and concentration of carbon, nitrogen, and phosphorus in grassland soils. Agronomy Journal 74 (1982) 831-835
43. Tilman D. Global environmental impacts of agricultural expansion: the need for sustainable and efficient practices. Proceedings of the National Academy of Sciences 96 (1999) 5995-6000
44. Vallad G.E., Cooperband L., and Goodman R.M. Plant foliar disease suppression mediated by composted forms of paper mill residuals exhibits molecular features of induced resistance. Physiological and Molecular Plant Pathology 63 (2003) 65-77
45. Van Bruggen A.H., and Semenov A.V. In search of biological indicators for soil health and disease suppression. Applied Soil Ecology 15 (2000) 13-24
46. Van Loon L.C., Bakker P.A.H.M., and Pieterse C.M.J. Systemic resistance induced by rhizosphere bacteria. Annual Review of Phytopathology 36 (1998) 453-483
47. Van Wees S.C.M., Pieterse C.M.J., Trijssenaar A., Van 'T Westende Y.A.M., Hartog F., and Van Loon L.C. Differential induction of systemic resistance in Arabidopsis by biocontrol bacteria. Molecular Plant-Microbe Interactions 10 (1997) 716-724
48. Vance E.D., Brookesa P.C., and Jenkinson D.S. Microbial biomass measurements in forest soils: the use of the chloroform fumigation-incubation method in strongly acid soils. Soil Biology and Biochemistry 19 (1987) 697-702
49. Weller D.M., Raaijmakers J.M., Mcspadden Gardener B.B., and Thomashow L.S. Microbial populations responsible for specific soil suppressiveness to plant pathogens. Annual Review of Phytopathology 40 (2002) 309-348
50. Wiseman B.M., Neate S.M., Keller K.O., and Smith S.E. Suppression of Rhizoctonia solani anastomosis group 8 in Australia and its biological nature. Soil Biology and Biochemistry 28 (1996) 727-732
51. Workneh F., and Van Bruggen A.H.C. Suppression of corky root of tomatoes in soils from organic farms associated with soil microbial activity and nitrogen status of soil and tomato tissue. Phytopathology 84 (1994) 688-694