-
1
-
-
0028861418
-
The PHD finger: Implications for chromatin-mediated transcriptional regulation
-
Aasland, R., Gibson, T. J. and Stewart, A. F. (1995). The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem. Sci. 20, 56-59.
-
(1995)
Trends Biochem. Sci
, vol.20
, pp. 56-59
-
-
Aasland, R.1
Gibson, T.J.2
Stewart, A.F.3
-
2
-
-
16544369949
-
The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche
-
Aida, M., Beis, D., Heidstra, R., Willemsen, V., Blilou, I., Galinha, C., Nussaume, L., Noh, Y. S., Amasino, R. and Scheres, B. (2004). The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche. Cell 119, 109-120.
-
(2004)
Cell
, vol.119
, pp. 109-120
-
-
Aida, M.1
Beis, D.2
Heidstra, R.3
Willemsen, V.4
Blilou, I.5
Galinha, C.6
Nussaume, L.7
Noh, Y.S.8
Amasino, R.9
Scheres, B.10
-
3
-
-
0032447801
-
Floral dip: A simplified method for Agrobacterium-mediated transfomation of Arabidopsis thaliana
-
Clough, S. and Bent, A. F. (1998). Floral dip: a simplified method for Agrobacterium-mediated transfomation of Arabidopsis thaliana. Plant J. 16, 735-743.
-
(1998)
Plant J
, vol.16
, pp. 735-743
-
-
Clough, S.1
Bent, A.F.2
-
4
-
-
0030576502
-
The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root
-
Di Laurenzio, L., Wysocka-Diller, J., Malamy, J. E., Pysh, L., Helariutta, Y., Freshour, G., Hahn, M. G., Feldmann, K. A. and Benfey, P. N. (1996). The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root. Cell 86, 423-433.
-
(1996)
Cell
, vol.86
, pp. 423-433
-
-
di Laurenzio, L.1
Wysocka-Diller, J.2
Malamy, J.E.3
Pysh, L.4
Helariutta, Y.5
Freshour, G.6
Hahn, M.G.7
Feldmann, K.A.8
Benfey, P.N.9
-
5
-
-
0345064191
-
Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis
-
Friml, J., Vieten, A., Sauer, M., Weijers, D., Schwarz, H., Hamann, T., Offringa, R. and Jürgens, G. (2003). Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis. Nature 426, 147-153.
-
(2003)
Nature
, vol.426
, pp. 147-153
-
-
Friml, J.1
Vieten, A.2
Sauer, M.3
Weijers, D.4
Schwarz, H.5
Hamann, T.6
Offringa, R.7
Jürgens, G.8
-
6
-
-
35548992454
-
PLETHORA proteins as dose-dependent master regulators of Arabidopsis root development
-
Galinha, C., Hofhuis, H., Luijten, M., Willemsen, V., Blilou, I., Heidstra, R. and Scheres, B. (2007). PLETHORA proteins as dose-dependent master regulators of Arabidopsis root development. Nature 449, 1053-1057.
-
(2007)
Nature
, vol.449
, pp. 1053-1057
-
-
Galinha, C.1
Hofhuis, H.2
Luijten, M.3
Willemsen, V.4
Blilou, I.5
Heidstra, R.6
Scheres, B.7
-
7
-
-
23744483843
-
Profiling histone modification patterns in plants using genomic tiling microarrays
-
Gendrel, A. V., Lippman, Z., Martienssen, R. and Colot, V. (2005). Profiling histone modification patterns in plants using genomic tiling microarrays. Nat. Methods 3, 213-218.
-
(2005)
Nat. Methods
, vol.3
, pp. 213-218
-
-
Gendrel, A.V.1
Lippman, Z.2
Martienssen, R.3
Colot, V.4
-
8
-
-
1242352556
-
Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana
-
Haecker, A., Gross-Hardt, R., Geiges, B., Sarkar, A., Breuninger, H., Herrmann, M. and Laux, T. (2004). Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana. Development 131, 657-668.
-
(2004)
Development
, vol.131
, pp. 657-668
-
-
Haecker, A.1
Gross-Hardt, R.2
Geiges, B.3
Sarkar, A.4
Breuninger, H.5
Herrmann, M.6
Laux, T.7
-
9
-
-
0036645372
-
The Arabidopsis BODENLOS gene encodes an auxin response protein inhibiting MONOPTEROS-mediated embryo patterning
-
Hamann, T., Benkova, E., Bäurle, I., Kientz, M. and Jürgens, G. (2002). The Arabidopsis BODENLOS gene encodes an auxin response protein inhibiting MONOPTEROS-mediated embryo patterning. Genes Dev. 16, 1610-1615.
-
(2002)
Genes Dev
, vol.16
, pp. 1610-1615
-
-
Haman, T.1
Benkova, E.2
Bäurle, I.3
Kientz, M.4
Jürgens, G.5
-
10
-
-
0032473570
-
The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development
-
Hardtke, C. S. and Berleth, T. (1998). The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development. EMBO J. 17, 1405-1411.
-
(1998)
EMBO J
, vol.17
, pp. 1405-1411
-
-
Hardtke, C.S.1
Berleth, T.2
-
11
-
-
0034716906
-
The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling
-
Helariutta, Y., Fukaki, H., Wysocka-Diller, J., Nakajima, K., Jung, J., Sena, G., Hauser, M. T. and Benfey, P. N. (2000). The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling. Cell 101, 555-567.
-
(2000)
Cell
, vol.101
, pp. 555-567
-
-
Helariutta, Y.1
Fukaki, H.2
Wysocka-Diller, J.3
Nakajima, K.4
Jung, J.5
Sena, G.6
Hauser, M.T.7
Benfey, P.N.8
-
12
-
-
0035839136
-
Translating the histone code
-
Jenuwein, T. and Allis, C. D. (2001). Translating the histone code. Science 293, 1074-1080.
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
13
-
-
66149189557
-
Arabidopsis ING and Alfin1-like protein families localize to the nucleus and bind to H3K4me3/2 via plant homeodomain fingers
-
Lee, W. Y., Lee D., Chung, W. I. and Kwon, C. S. (2009). Arabidopsis ING and Alfin1-like protein families localize to the nucleus and bind to H3K4me3/2 via plant homeodomain fingers. Plant J. 58, 511-524.
-
(2009)
Plant J
, vol.58
, pp. 511-524
-
-
Lee, W.Y.1
Lee, D.2
Chung, W.I.3
Kwon, C.S.4
-
14
-
-
33745809637
-
Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF
-
Li, H., Ilin, S., Wang, W., Duncan, E. M., Wysocka, J., Allis, C. D. and Patel, D. J. (2006). Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature 442, 91-95.
-
(2006)
Nature
, vol.442
, pp. 91-95
-
-
Li, H.1
Ilin, S.2
Wang, W.3
Duncan, E.M.4
Wysocka, J.5
Allis, C.D.6
Patel, D.J.7
-
15
-
-
0025837661
-
Mutations affecting body organisation in the Arabidopsis embryo
-
Mayer, U., Torres-Ruiz, R. A., Berleth, T., Misëra, S. and Jürgens, G. (1991). Mutations affecting body organisation in the Arabidopsis embryo. Nature 353, 402-407.
-
(1991)
Nature
, vol.353
, pp. 402-407
-
-
Mayer, U.1
Torres-Ruiz, R.A.2
Berleth, T.3
Misëra, S.4
Jürgens, G.5
-
17
-
-
33745818717
-
Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2
-
Peña, P. V., Davrazou, F., Shi, X., Walter, K. L., Verkhusha, V. V., Gozani, O., Zhao, R. and Kutateladze, T. G. (2006). Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2. Nature 442, 100-103.
-
(2006)
Nature
, vol.442
, pp. 100-103
-
-
Peña, P.V.1
Davrazou, F.2
Shi, X.3
Walter, K.L.4
Verkhusha, V.V.5
Gozani, O.6
Zhao, R.7
Kutateladze, T.G.8
-
18
-
-
0037312037
-
SCARECROW is involved in positioning the stem cell niche in the Arabidopsis root meristem
-
Sabatini, S., Heidstra, R., Wildwater, M. and Scheres, B. (2003). SCARECROW is involved in positioning the stem cell niche in the Arabidopsis root meristem. Genes Dev. 17, 354-358.
-
(2003)
Genes Dev
, vol.17
, pp. 354-358
-
-
Sabatini, S.1
Heidstra, R.2
Wildwater, M.3
Scheres, B.4
-
19
-
-
49949105034
-
The Arabidopsis OBERON1 and OBERON2 genes encode plant homeodomain finger proteins and are required for apical meristem maintenance
-
Saiga, S., Furumizu, C., Yokoyama, R., Kurata, T., Sato, S., Kato, T., Tabata, S., Suzuki, M. and Komeda, Y. (2008). The Arabidopsis OBERON1 and OBERON2 genes encode plant homeodomain finger proteins and are required for apical meristem maintenance. Development 135, 1751-1759.
-
(2008)
Development
, vol.135
, pp. 1751-1759
-
-
Saiga, S.1
Furumizu, C.2
Yokoyama, R.3
Kurata, T.4
Sato, S.5
Kato, T.6
Tabata, S.7
Suzuki, M.8
Komeda, Y.9
-
20
-
-
58649113419
-
HBO1 HAT complexes target chromatin throughout gene coding regions via multiple PHD finger interactions with histone H3 tail
-
Saksouk, N., Avvakumov, N., Champagne, K. S., Hung, T., Doyon, Y., Cayrou, C., Paquet, E., Ullah, M., Landry, A. J., Cote, V. et al. (2009). HBO1 HAT complexes target chromatin throughout gene coding regions via multiple PHD finger interactions with histone H3 tail. Mol. Cell 33, 257-265.
-
(2009)
Mol. Cell
, vol.33
, pp. 257-265
-
-
Saksouk, N.1
Avvakumov, N.2
Champagne, K.S.3
Hung, T.4
Doyon, Y.5
Cayrou, C.6
Paquet, E.7
Ullah, M.8
Landry, A.J.9
Cote, V.10
-
21
-
-
34147203723
-
Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers
-
Sarkar, A. K., Luijten, M., Miyashima, S., Lenhard, M., Hashimoto, T., Nakajima, K., Scheres, B., Heidstra, R. and Laux, T. (2007). Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers. Nature 446, 811-814.
-
(2007)
Nature
, vol.446
, pp. 811-814
-
-
Sarkar, A.K.1
Luijten, M.2
Miyashima, S.3
Lenhard, M.4
Hashimoto, T.5
Nakajima, K.6
Scheres, B.7
Heidstra, R.8
Laux, T.9
-
22
-
-
77950867049
-
MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor
-
Schlereth, A., Möller, B., Liu, W., Kientz, M., Flipse, J., Rademacher, E. H., Schmid, M., Jürgens, G. and Weijers, D. (2010). MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor. Nature 464, 913-916.
-
(2010)
Nature
, vol.464
, pp. 913-916
-
-
Schlereth, A.1
Möller, B.2
Liu, W.3
Kientz, M.4
Flipse, J.5
Rademacher, E.H.6
Schmid, M.7
Jürgens, G.8
Weijers, D.9
-
23
-
-
33745868054
-
ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression
-
Shi, X., Hong, T., Walter, K. L., Ewalt, M., Michishita, E., Hung, T., Carney, D., Peña, P., lan, F., Kaadige, M. R. et al. (2006). ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression. Nature 442, 96-99.
-
(2006)
Nature
, vol.442
, pp. 96-99
-
-
Shi, X.1
Hong, T.2
Walter, K.L.3
Ewalt, M.4
Michishita, E.5
Hung, T.6
Carney, D.7
Peña, P.8
Lan, F.9
Kaadige, M.R.10
-
24
-
-
33751527233
-
Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs
-
Taverna, S. D., Ilin, S., Rogers, R. S., Tanny, J. C., Lavender, H., Li, H., Baker, L., Boyle, J., Blair, L. P., Chait, B. T. et al. (2006). Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs. Mol. Cell 24, 785-796.
-
(2006)
Mol. Cell
, vol.24
, pp. 785-796
-
-
Taverna, S.D.1
Ilin, S.2
Rogers, R.S.3
Tanny, J.C.4
Lavender, H.5
Li, H.6
Baker, L.7
Boyle, J.8
Blair, L.P.9
Chait, B.T.10
-
25
-
-
35848961668
-
How chromatin-binding modules interpret histone modifications: Lessons from professional pocket pickers
-
Taverna, S. D., Li, H., Ruthenburg, A. J., Allis, C. D. and Patel, D. J. (2007). How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers. Nat. Struct. Mol. Biol. 14, 1025-1040.
-
(2007)
Nat. Struct. Mol. Biol
, vol.14
, pp. 1025-1040
-
-
Taverna, S.D.1
Li, H.2
Ruthenburg, A.J.3
Allis, C.D.4
Patel, D.J.5
-
26
-
-
67651202794
-
Arabidopsis plant homeodomain finger proteins operate downstream of auxin accumulation in specifying the vasculature and primary root meristem
-
Thomas, C. L., Schmidt, D., Bayer, E. M., Dreos, R. and Maule, A. J. (2009). Arabidopsis plant homeodomain finger proteins operate downstream of auxin accumulation in specifying the vasculature and primary root meristem. Plant J. 59, 426-436.
-
(2009)
Plant J
, vol.59
, pp. 426-436
-
-
Thomas, C.L.1
Schmidt, D.2
Bayer, E.M.3
Dreos, R.4
Maule, A.J.5
-
27
-
-
0037075019
-
Stem cells that make stems
-
Weigel, D. and Jürgens, G. (2002). Stem cells that make stems. Nature 415, 751-754.
-
(2002)
Nature
, vol.415
, pp. 751-754
-
-
Weigel, D.1
Jürgens, G.2
-
28
-
-
31744445986
-
Auxin triggers transient local signaling for cell specification in Arabidopsis embryogenesis
-
Weijers, D., Schlereth, A., Ehrismann, J. S., Schwank, G., Kientz, M. and Jürgens, G. (2006). Auxin triggers transient local signaling for cell specification in Arabidopsis embryogenesis. Dev. Cell 10, 265-270.
-
(2006)
Dev. Cell
, vol.10
, pp. 265-270
-
-
Weijers, D.1
Schlereth, A.2
Ehrismann, J.S.3
Schwank, G.4
Kientz, M.5
Jürgens, G.6
-
29
-
-
33745839365
-
A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodeling
-
Wysocka, J., Swigut, T., Xiao, H., Milne, T. A., Kwon, S. Y., Landry, J., Kauer, M., Tackett, A. J., Chait, B. T., Badenhorst, P. et al. (2006). A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodeling. Nature 442, 86-90.
-
(2006)
Nature
, vol.442
, pp. 86-90
-
-
Wysocka, J.1
Swigut, T.2
Xiao, H.3
Milne, T.A.4
Kwon, S.Y.5
Landry, J.6
Kauer, M.7
Tackett, A.J.8
Chait, B.T.9
Badenhorst, P.10
-
30
-
-
0033961136
-
Molecular analysis of SCARECROW function reveals a radial patterning mechanism common to root and shoot
-
Wysocka-Diller, J. W., Helariutta, Y., Fukaki, H., Malamy, J. E. and Benfey, P. N. (2000). Molecular analysis of SCARECROW function reveals a radial patterning mechanism common to root and shoot. Development 127, 595-603.
-
(2000)
Development
, vol.127
, pp. 595-603
-
-
Wysocka-Diller, J.W.1
Helariutta, Y.2
Fukaki, H.3
Malamy, J.E.4
Benfey, P.N.5
-
31
-
-
67650091251
-
Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana
-
Zhang, X., Bernatavichute, Y. V., Cokus, S., Pellegrini, M. and Jacobsen, S. E. (2009). Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biol. 10, R62.
-
(2009)
Genome Biol
, vol.10
-
-
Zhang, X.1
Bernatavichute, Y.V.2
Cokus, S.3
Pellegrini, M.4
Jacobsen, S.E.5
-
32
-
-
82655172577
-
The AP-3 adaptor complex is required for vacuolar function in Arabidopsis
-
Zwiewka, M., Feraru, E., Möller, B., Hwang, I., Feraru, M. I., Klein-Vehn, J., Weijers, D. and Friml, J. (2011). The AP-3 adaptor complex is required for vacuolar function in Arabidopsis. Cell Res. 21, 1711-1722.
-
(2011)
Cell Res
, vol.21
, pp. 1711-1722
-
-
Zwiewka, M.1
Feraru, E.2
Möller, B.3
Hwang, I.4
Feraru, M.I.5
Klein-Vehn, J.6
Weijers, D.7
Friml, J.8
|