Analysis of fluid flow and wall shear stress patterns inside partially filled agitated culture well plates

Annals of Biomedical Engineering

Volumn 40, Issue 3, 2012, Pages 707-728

  Salek, M Mehdi ^a   Sattari, Pooria ^a   Martinuzzi, Robert J ^a  

^a UNIVERSITY OF CALGARY   (Canada)

Author keywords

Biofilms; CFD; Endothelial cells; Hydrodynamics; Optical shear stress sensor; PIV; Six well culture plates; Wall shear stress

Indexed keywords

HYDRODYNAMICS (GENERAL); OPTICAL SHEAR STRESS SENSOR; PIV; SIX-WELL CULTURE PLATES; WALL SHEAR STRESS;

BIOFILMS; CELL CULTURE; ENDOTHELIAL CELLS; FLOW PATTERNS; HYDRODYNAMICS; PLATES (STRUCTURAL COMPONENTS); SHEAR STRESS;

COMPUTATIONAL FLUID DYNAMICS;

ARTICLE; BIOFILM; BIOLOGICAL MODEL; BIOMEDICAL ENGINEERING; CULTURE TECHNIQUE; CYTOLOGY; ENDOTHELIUM CELL; GROWTH, DEVELOPMENT AND AGING; HUMAN; HYDRODYNAMICS; INSTRUMENTATION; MECHANICAL STRESS; METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS; METHODOLOGY; PHYSIOLOGY; ROTATION; SHEAR STRENGTH;

BIOFILMS; BIOMEDICAL ENGINEERING; CELL CULTURE TECHNIQUES; ENDOTHELIAL CELLS; HUMANS; HYDRODYNAMICS; METHICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS; MODELS, BIOLOGICAL; ROTATION; SHEAR STRENGTH; STRESS, MECHANICAL;

EID: 84858706480     PISSN: 00906964     EISSN: 15739686     Source Type: Journal    
DOI: 10.1007/s10439-011-0444-9     Document Type: Article

References (35)

1. A Abelson M Denny 1997 Settlement of marine organisms in flow Annu. Rev. Ecol. Syst. 28 317 339 10.1146/annurev.ecolsys.28.1.317 (Pubitemid 28012295)
2. NF Azevedo AR Pinto N Reis CW Keevil MJ Vieira 2006 Shear stress, temperature and inoculation concentration influence on the adhesion of water-stressed Helicobacter pylori to stainless steel 304 Appl. Environ. Microbiol. 72 2936 2941 16598000 10.1128/AEM.72.4.2936-2941.2006 1:CAS:528:DC%2BD28XktFansLs%3D
3. RE Berson MR Purcell MK Sharp 2008 Computationally determined shear on cells grown in orbiting culture dishes Adv. Exp. Med. Biol. 614 189 198 18290329 10.1007/978-0-387-74911-2-22
4. JD Bryers 2008 Medical biofilms Biotechnol. Bioeng. 100 1 18 18366134 10.1002/bit.21838 1:CAS:528:DC%2BD1cXks12qtL4%3D (Pubitemid 351579011)
5. Byrd, J. J., and T. M. Powledge. The Complete Idiots Guide to Microbiology. New York: Alpha, pp. 197-201, 2006.
6. MJ Chen Z Zhang TR Bott 2005 Effects of operating conditions on the adhesive strength of Pseudomonas fluorescens biofilms in tubes Colloids Surf. B 43 61 71 10.1016/j.colsurfb.2005.04.004 1:CAS:528:DC%2BD2MXltVehtrk%3D (Pubitemid 40776049)
7. A Dardik L Chen J Frattini H Asada F Haziz F Kudo B Sumpio 2005 Differential effects of orbital and laminar shear stress on endothelial cells J. Vasc. Surg. 41 5 869 880 15886673 10.1016/j.jvs.2005.01.020 (Pubitemid 40693811)
8. R Donlan J Costerton 2002 Biofilms: survival mechanisms of clinically relevant microorganisms Clin. Microbiol. Rev. 15 167 193 11932229 10.1128/CMR.15.2.167-193.2002 1:CAS:528:DC%2BD38XjslGrurg%3D (Pubitemid 34303762)
9. Fluent Manual, Fluent 6.3 FLUENT Inc., 2006.
10. HP Greenspan LN Howard 1963 On a time-dependent motion of a rotating fluid J. Fluid Mech. 17 385 404 10.1017/S0022112063001415
11. HP Greenspan 1965 On the general theory of contained rotating fluid motion J. Fluid Mech. 22 3 449 462 10.1017/S0022112065000897
12. M Haga A Yamashita J Paszkowiak BE Sumpio A Dardik 2003 Oscillatory shear stress increases smooth muscle cell proliferation and Akt phosphorylation J. Vasc. Surg. 37 6 1277 1284 12764276 10.1016/S0741-5214(03)00329-X (Pubitemid 41123106)
13. EJ Hopfinger FK Browand Y Gagne 1982 Turbulence and waves in rotating tanks J. Fluid Mech. 125 505 534 10.1017/S0022112082003462
14. EJ Hopfinger GJF van Heijst 1993 Vortices in rotating fluids Ann. Rev. Fluid Mech. 25 241 289 10.1146/annurev.fl.25.010193.001325 (Pubitemid 23382876)
15. V Kostenko MM Salek P Sattari RJ Martinuzzi 2010 Staphylococcus aureus biofilm formation and tolerance to antibiotics in response to oscillatory shear stresses of physiological levels FEMS Immunol. Med. Microbiol. 59 421 431 20528928 1:CAS:528:DC%2BC3cXhtVeju7%2FE
16. LW Kraiss AS Weyrich NM Alto DA Dixon TM Ennis V Modur TM McIntyre SM Prescott GS Zimmerman 2000 Fluid flow activates a regulator of translation, p70/p85 S6 kinase, in human endothelial cells Am. J. Physiol. Heart Circ. Physiol. 278 H1537 H1544 10775131 1:CAS:528:DC%2BD3cXjvFahsrY%3D
17. K Ley E Lundgren EM Berger K-E Arfors 1989 Shear-dependent inhibition of granulocyte adhesion to cultured endothelium by dextran sulfate Blood 73 1324 1330 2467707 1:CAS:528:DyaL1MXhvVGlu7k%3D (Pubitemid 19107441)
18. SM MacLeod DJ Stickler 2007 Species interactions in mixed-community crystalline biofilms on urinary catheters Med. Microbiol. 56 Pt 11 1549 1557 10.1099/jmm.0.47395-0 (Pubitemid 350175083)
19. MS Meda AJ Lopez A Guyot 2007 Candida inferior vena cava filter infection and septic thrombophlebitis Br. J. Radiol. 80 950 e48 e49 17495055 10.1259/bjr/13944004 1:STN:280:DC%2BD2s3os1amtg%3D%3D
20. TS Murray M Egan BI Kazmierczak 2007 Pseudomonas aeruginosa chronic colonization in cystic fibrosis patients Curr. Opin. Pediatr. 19 1 83 88 17224667 10.1097/MOP.0b013e3280123a5d (Pubitemid 46114762)
21. SL Percival PG Bowler 2004 Biofilms and their potential role in wound healing Wounds 16 234 240 (Pubitemid 39107936)
22. PL Phillips E Sampson Q Yang P Antonelli A Progulske-Fox G Schultz 2008 Bacterial biofilms in wounds Wound Healing South Afr. 1 10 12
23. E Presterl A Lassnigg M Eder S Reichmann AM Hirschl W Graninger 2007 Effects of tigecycline, linezolid and vancomycin on biofilms of viridans streptococci isolates from patients with endocarditis Int. J. Artif. Organs 30 9 798 804 17918125 1:CAS:528:DC%2BD2sXhsVyjt73P (Pubitemid 350081642)
24. B Purevdorj JW Costerton P Stoodley 2002 Influence of hydrodynamics and cell signaling on the structure and behavior of Pseudomonas aeruginosa biofilms Appl. Environ. Microbiol. 68 4457 4464 12200300 10.1128/AEM.68.9.4457-4464.2002 1:CAS:528:DC%2BD38XmvVCjsrY%3D (Pubitemid 34988128)
25. MM Salek S Jones RJ Martinuzzi 2009 The influence of flow cell geometry related shear stresses on the distribution, structure and susceptibility of Pseudomonas aeruginosa 01 biofilms Biofouling 25 711 725 20183130 10.1080/08927010903114603
26. Sattari, P. Design and Fabrication of an Optical Non-intrusive Shear Rate Sensor. M.Sc. Thesis, Department of Mechanical and Manufacturing Engineering, University of Calgary, 2008.
27. Sherman, F. S. Viscous Flow. New York: McGraw-Hill, pp. 140-141, 1990.
28. S Sillankorva P Neubauer J Azeredo 2008 Pseudomonas fluorescens biofilms subjected to phage phiIBB-PF7A BMC Biotechnol. 8 79 18954451 10.1186/1472-6750-8-79
29. M Simões MO Pereira S Sillankorva J Azeredo MJ Vieira 2007 The effect of hydrodynamic conditions on the phenotype of Pseudomonas fluorescens biofilms Biofouling 23 249 258 17653934 10.1080/08927010701368476 (Pubitemid 47123829)
30. M Simões MO Pereira MJ Vieira 2007 The role of hydrodynamic stress on the phenotypic characteristics of single and binary biofilms of Pseudomonas fluorescens Water Sci. Technol. 55 437 445 17547015 10.2166/wst.2007.288 (Pubitemid 46840169)
31. C Sousa M Henriques J Azeredo P Teixeira R Oliveira 2008 Staphylococcus epidermidis glucose uptake in biofilm versus planktonic cells World J. Microbiol. Biotechnol. 24 423 426 10.1007/s11274-007-9478-4 1:CAS:528: DC%2BD1cXit1Sku7s%3D (Pubitemid 351286964)
32. P Stoodley I Dodds JD Boyle HM Lappin-Scott 1999 Influence of hydrodynamics and nutrients on biofilm structure J. Appl. Microbiol. 85 S19 S28 10.1111/j.1365-2672.1998.tb05279.x
33. White, F. M. Fluid Mechanics (6th ed.). New York: McGraw-Hill, pp. 164-166, 2008.
34. Wilson, D. W., J. A. Scalf, S. Forouhar, R. Muller, F. Taugwalder, M. Gharib, D. Fourguette, and D. Modarress. Diffractive optic fluid shear stress sensor. In: Trends in Optics and Photonics, Diffractive Optics and Micro-Optics, Vol. 41, edited by T. Li. Washington, DC: Optical Society of America, 2000, pp. 306-308.
35. Youngs, D. L. Time-dependent multi-material flow with large fluid distortion. In: Numerical Methods for Fluid Dynamics, edited by K. W. Morton, and M. J. Baines. New York: Academic, 1982.