Identification of ovule and seed genes from Citrus clementina

Tree Genetics and Genomes

Volumn 8, Issue 2, 2012, Pages 227-235

  Garcia Lor, Andres ^a   Garcia Martinez, Jose Luis ^b   Perez Amador, Miguel A ^b  

^a INSTITUTO VALENCIANO DE INVESTIGACIONES AGRARIAS IVIA   (Spain)

^b Ciudad Politécnica de la Innovación   (Spain)

Author keywords

Citrus; Clementine (Citrus clementina); EST; Ovule; Seed

Indexed keywords

CITRUS; CITRUS CLEMENTINA; CITRUS RETICULATA; HEXAPODA;

EID: 84858614525     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-011-0435-x     Document Type: Article

References (34)

1. Al-Shahrour F, Diaz-Uriarte R, Dopazo J (2005) Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information. Bioinformatics 21: 2988-2993.
2. Al-Shahrour F, Minguez P, Tarraga J, Montaner D, Alloza E, Vaquerizas JMM, Conde L, Blaschke C, Vera J, Dopazo J (2006) BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. Nucleic Acids Res 34: W472-W476.
3. Alos E, Cercos M, Rodrigo MJ, Zacarias L, Talon M (2006) Regulation of color break in citrus fruits. Changes in pigment profiling and gene expression induced by gibberellins and nitrate, two ripening retardants. J Agric Food Chem 54: 4888-4895.
4. Bugos RC, Chiang VL, Zhang XH, Campbell ER, Podila GK, Campbell WH (1995) RNA isolation from plant tissues recalcitrant to extraction in guanidine. Biotechniques 19: 734-737.
5. Costantini E, Landi L, Silvestroni O, Pandolfini T, Spena A, Mezzetti B (2007) Auxin synthesis-encoding transgene enhances grape fecundity. Plant Physiol 143: 1689-1694.
6. Debeaujon I, Nesi N, Perez P, Devic M, Grandjean O, Caboche M, Lepiniec L (2003) Proanthocyanidin-accumulating cells in Arabidopsis testa: regulation of differentiation and role in seed development. Plant Cell 15: 2514-2531.
7. Dorcey E, Urbez C, Blazquez MA, Carbonell J, Perez-Amador MA (2009) Fertilization-dependent auxin response in ovules triggers fruit development through the modulation of gibberellin metabolism in Arabidopsis. Plant J 58: 318-332.
8. Debeaujon I, Peeters AJ, Léon-Kloosterziel KM, Koornneef M (2001) The TRANSPARENT TESTA12 gene of Arabidopsis encodes a multidrug secondary transporter-like protein required for flavonoid sequestration in vacuoles of the seed coat endothelium. Plant Cell 13: 853-571.
9. Forment J, Gadea J, Huerta L, Abizanda L, Agusti J, Alamar S, Alos E, Andres F, Arribas R, Beltran JP, Berbel A, Blazquez MA, Brumos J, Canas LA, Cercos M, Colmenero-Flores JM, Conesa A, Estables B, Gandia M, Garcia-Martinez JL, Gimeno J, Gisbert A, Gomez G, Gonzalez-Candelas L, Granell A, Guerra J, Lafuente MT, Madueno F, Marcos JF, Marques MC, Martinez F, Martinez-Godoy MA, Miralles S, Moreno P, Navarro L, Pallas V, Perez-Amador MA, Perez-Valle J, Pons C, Rodrigo I, Rodriguez PL, Royo C, Serrano R, Soler G, Tadeo F, Talon M, Terol J, Trenor M, Vaello L, Vicente O, Vidal C, Zacarias L, Conejero V (2005) Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies. Plant Mol Biol 57: 375-391.
10. Forment J, Gilabert F, Robles A, Conejero V, Nuez F, Blanca JM (2008) EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration. BMC Bioinformatics 9: 5.
11. Fos M, Nuez F, Garcia-Martinez JL (2000) The gene pat-2, which induces natural parthenocarpy, alters the gibberellin content in unpollinated tomato ovaries. Plant Physiol 122: 471-480.
12. Fos M, Proaño K, Nuez F, Garcia-Martinez JL (2001) Role of gibberellins in parthenocarpic fruit development induced by the genetic system pat-3/pat-4 in tomato. Physiol Plant 111: 545-550.
13. Hashimoto JG, Beadles-Bohling AS, Wiren KM (2004) Comparison of RiboGreen and 18S rRNA quantitation for normalizing real-time RT-PCR expression analysis. Biotechniques 36: 54-60.
14. Haughn G, Chaudhury A (2005) Genetic analysis of seed coat development in Arabidopsis. Trends Plant Sci 10: 472-477.
15. Hartley RW (1988) Barnase and barstar. Expression of its cloned inhibitor permits expression of a cloned ribonuclease. J Mol Biol 202: 913-915.
16. Jackson DP (1992) In situ hybridization in plants. In: Bowles DJ, Gurr SJ, Pherenson M (eds) Molecular plant pathology: a practical approach. Oxford University Press, Oxford, UK, pp 163-174.
17. Koltunow AM (1993) Isolation and construction of genes to control seed production in Citrus. In: Hyashi T, Omura M, Scott NS (eds) Techniques on gene diagnosis and breeding. Fruit Tree Research Station, Tsukuba, Japan, pp 101-108.
18. Koltunow AM, Soltys K, Nito N, Mcclure S (1995) Anther, ovule, seed and nucellar embryo development in Citrus sinensis cv Valencia. Can J Bot 73: 1567-1582.
19. Koltunow AM, Brennan P, Bond JE, Barker SJ (1998) Evaluation of genes to reduce seed size in Arabidopsis and tobacco and their application to Citrus. Mol Breeding 4: 235-251.
20. Le BH, Cheng C, Bui AQ, Wagmaister JA, Henry KF, Pelletier J, Kwong L, Belmonte M, Kirkbride R, Horvath S, Drews GN, Fischer RL, Okamuro JK, Harada JJ, Goldberg RB (2010) Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors. Proc Natl Acad Sci USA 107: 8063-8070.
21. Li DD, Shi W, Deng XX (2002) Agrobacterium-mediated transformation of embryogenic calluses of Ponkan mandarin and the regeneration of plants containing the chimeric ribonuclease gene. Plant Cell Rep 21: 153-156.
22. Marques MC, Alonso-Cantabrana H, Forment J, Arribas R, Alamar S, Conejero V, Perez-Amador MA (2009) A new set of ESTs and cDNA clones from full-length and normalized libraries for gene discovery and functional characterization in citrus. BMC Genomics 10: 428.
23. Mezzetti B, Landi L, Pandolfini T, Spena A (2004) The DefH9-iaaM auxin-synthesizing gene increases plant fecundity and fruit production in strawberry and raspberry. BMC Biotechnology 4: 4.
24. Nesi N, Debeaujon I, Jond C, Stewart AJ, Jenkins GI, Caboche M, Lepiniec L (2002) The TRANSPARENT TESTA16 locus encodes the ARABIDOPSIS BSISTER MADS domain protein and is required for proper development and pigmentation of the seed coat. Plant Cell 14: 2463-2479.
25. Olimpieri I, Siligato F, Caccia R, Mariotti L, Ceccarelli N, Soressi GP, Mazzucato A (2007) Tomato fruit-set driven by pollination or by the parthenocarpic fruit allele are mediated by transcriptionally regulated gibberellin biosynthesis. Planta 226: 877-888.
26. Peer AW, Brown DE, Tague BW, Muday GK, Taiz L, Murphy AS (2001) Flavonoid accumulation patterns of transparent testa mutants of Arabidopsis. Plant Physiol 126: 536-548.
27. Rommens CM, Haring MA, Swords K, Davies HV, Belknap WR (2007) The intragenic approach as a new extension to traditional plant breeding. Trends Plant Sci 12: 397-403.
28. Rotino GL, Acciarri N, Sabatini E, Mennella G, Scalzo RL, Maestrelli A, Molesini B, Pandolfini T, Scalzo J, Mezzetti B, Spena A (2005) Open field trial of genetically modified parthenocarpic tomato: seedlessness and fruit quality. BMC Biotechnol 5: 32.
29. Schoenbohm C, Martens S, Eder C, Forkmann G, Weisshaar B (2000) Identification of the Arabidopsis thaliana flavonoid 3′-hydroxylase gene and functional expression of the encoded P450 enzyme. Biol Chem 381: 749-753.
30. Schwabe WW, Mills JJ (1981) Hormones and parthenocarpic fruit set: a literature survey. Hort Abstr 51: 661-698.
31. Singh DP, Filardo FF, Storey R, Jermakow AM, Yamaguchi S, Swain SM (2010) Overexpression of a gibberellin inactivation gene alters seed development, KNOX gene expression, and plant development in Arabidopsis. Physiol Plant 138: 74-90.
32. Talon M, Zacarias L, Primo-Millo E (1992) Gibberellins and parthenocarpic ability in developing ovaries of seedless mandarins. Plant Physiol 99: 1575-1581.
33. Zimmermann P, Hirsch-Hoffmann M, Hennig L, Gruissem W (2004) GENEVESTIGATOR: Arabidopsis microarray database and analysis toolbox. Plant Physiol 136: 2621-2632.
34. Zhulidov PA, Bogdanova EA, Shcheglov AS, Vagner LL, Khaspekov GL, Kozhemyako VB, Matz MV, Meleshkevitch E, Moroz LL, Lukyanov SA, Shagin DA (2004) Simple cDNA normalization using Kamchatka crab duplex-specific nuclease. Nucleic Acids Res 32: e37.