메뉴 건너뛰기




Volumn 98, Issue 5, 2011, Pages 859-871

A sequential approach using genetic and morphological analyses to test species status: The case of United States federally endangered Agalinis acuta (Orobanchaceae)

Author keywords

Agalinis acuta; Conservation; Endangered Species Act; Orobanchaceae; Phylogenetics; Population genetics; Sandplain gerardia; Species concepts; Species delimitation

Indexed keywords

CHLOROPLAST DNA; MICROSATELLITE DNA;

EID: 84858434555     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.1000267     Document Type: Article
Times cited : (8)

References (69)
  • 1
    • 0032226312 scopus 로고    scopus 로고
    • Individuality and the existence of species through time
    • Baum, D. A. 1998. Individuality and the existence of species through time. Systematic Biology 47: 641-653.
    • (1998) Systematic Biology , vol.47 , pp. 641-653
    • Baum, D.A.1
  • 2
    • 67449149017 scopus 로고    scopus 로고
    • Species as ranked taxa
    • Baum, D. A. 2009. Species as ranked taxa. Systematic Biology 58: 74-86.
    • (2009) Systematic Biology , vol.58 , pp. 74-86
    • Baum, D.A.1
  • 3
    • 0000601479 scopus 로고
    • In Monographs in Systematic Botany: Experimental and molecular approaches to plant biosystematics, Missouri Botanical Garden Press, St. Louis, Missouri, USA
    • Baum, D. A., and K. L. Shaw. 1995. Genealogical perspectives on the species problem. In Monographs in Systematic Botany: Experimental and molecular approaches to plant biosystematics, 289-303. Missouri Botanical Garden Press, St. Louis, Missouri, USA.
    • (1995) Genealogical perspectives on the species problem , pp. 289-303
    • Baum, D.A.1    Shaw, K.L.2
  • 4
    • 72949090454 scopus 로고    scopus 로고
    • The Lattice Project: A grid research and production environment combining multiple grid computing models
    • In M. H. W. Weber, [ed.], applications and supporting communities,. Rechenkraft. net, Marburg, Germany
    • Bazinet, A. L., and M. P. Cummings. 2008. The Lattice Project: A grid research and production environment combining multiple grid computing models. In M. H. W. Weber, [ed.], Distributed and grid computing-Science made transparent for everyone. Principles, applications and supporting communities, 2-13. Rechenkraft. net, Marburg, Germany.
    • (2008) Distributed and grid computing-Science made transparent for everyone. Principles , pp. 2-13
    • Bazinet, A.L.1    Cummings, M.P.2
  • 5
    • 33750843754 scopus 로고    scopus 로고
    • Grid services base library: A high-level, procedural application program interface for writing Globus-based Grid services
    • Bazinet, A. L., D. S. Myers, J. Fuetsch, and M. P. Cummings. 2007. Grid services base library: A high-level, procedural application program interface for writing Globus-based Grid services. Future Generation Computer Systems 23: 517-522.
    • (2007) Future Generation Computer Systems , vol.23 , pp. 517-522
    • Bazinet, A.L.1    Myers, D.S.2    Fuetsch, J.3    Cummings, M.P.4
  • 7
    • 33847668722 scopus 로고    scopus 로고
    • Microsatellite null alleles and estimation of population differentiation
    • Chapuis, M. P., and A. Estoup. 2007. Microsatellite null alleles and estimation of population differentiation. Molecular Biology and Evolution 24: 621-631.
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 621-631
    • Chapuis, M.P.1    Estoup, A.2
  • 8
    • 3042750437 scopus 로고    scopus 로고
    • Sinauer, Sunderland, Massachusetts, USA
    • Coyne, J. A., and H. A. Orr. 2004. Speciation. Sinauer, Sunderland, Massachusetts, USA.
    • (2004) Speciation
    • Coyne, J.A.1    Orr, H.A.2
  • 9
    • 0002047502 scopus 로고
    • Speciation and its ontology: The empirical consequences of alternative species concepts for understanding patterns and processes of differentiation
    • In D. Otte and J. A. Endler [eds.], Sinauer, Sunderland, Massachusetts, USA
    • Cracraft, J. 1989. Speciation and its ontology: The empirical consequences of alternative species concepts for understanding patterns and processes of differentiation. In D. Otte and J. A. Endler [eds.], Speciation and its consequences, 28-59. Sinauer, Sunderland, Massachusetts, USA.
    • (1989) Speciation and its consequences , pp. 28-59
    • Cracraft, J.1
  • 11
    • 51549089796 scopus 로고    scopus 로고
    • A genealogical approach to quantifying lineage divergence
    • Cummings, M. P., M. C. Neel, and K. L. Shaw. 2008. A genealogical approach to quantifying lineage divergence. Evolution 62: 2411-2422.
    • (2008) Evolution , vol.62 , pp. 2411-2422
    • Cummings, M.P.1    Neel, M.C.2    Shaw, K.L.3
  • 12
    • 36249004900 scopus 로고    scopus 로고
    • Species concepts and species delimitation
    • de Queiroz, K. 2007. Species concepts and species delimitation. Systematic Biology 56: 879-886.
    • (2007) Systematic Biology , vol.56 , pp. 879-886
    • de Queiroz, K.1
  • 13
    • 0000765758 scopus 로고
    • Role of corolla abscission in delayed self-pollination of Mimulus guttatus (Scrophulariaceae)
    • Dole, J. A. 1990. Role of corolla abscission in delayed self-pollination of Mimulus guttatus (Scrophulariaceae). American Journal of Botany 77: 1505-1507.
    • (1990) American Journal of Botany , vol.77 , pp. 1505-1507
    • Dole, J.A.1
  • 14
    • 55949084655 scopus 로고    scopus 로고
    • Molecular evidence on the species status and phylogenetic relationships of Spiranthes parksii, an endangered orchid from Texas
    • Dueck, L. A., and K. M. Cameron. 2008. Molecular evidence on the species status and phylogenetic relationships of Spiranthes parksii, an endangered orchid from Texas. Conservation Genetics 9: 1617-1631.
    • (2008) Conservation Genetics , vol.9 , pp. 1617-1631
    • Dueck, L.A.1    Cameron, K.M.2
  • 15
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: A multiple sequence alignment method with reduced time and space complexity
    • Edgar, R. C. 2004a. MUSCLE: A multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 1 13.
    • (2004) BMC Bioinformatics , vol.5 , pp. 1-13
    • Edgar, R.C.1
  • 16
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar, R. C. 2004b. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797.
    • (2004) Nucleic Acids Research , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 17
    • 56549126762 scopus 로고    scopus 로고
    • Using patterns of genetic structure based on microsatellite loci to test hypotheses of current hybridization, ancient hybridization and incomplete lineage sorting in Conradina (Lamiaceae)
    • Edwards, C. E., D. E. Soltis, and P. S. Soltis. 2008. Using patterns of genetic structure based on microsatellite loci to test hypotheses of current hybridization, ancient hybridization and incomplete lineage sorting in Conradina (Lamiaceae). Molecular Ecology 17: 5157-5174.
    • (2008) Molecular Ecology , vol.17 , pp. 5157-5174
    • Edwards, C.E.1    Soltis, D.E.2    Soltis, P.S.3
  • 18
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin ver. 3.0: An integrated software package for population genetics data analysis
    • Excoffier, L., G. Laval, and S. Schneider. 2005. Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 47-50.
    • (2005) Evolutionary Bioinformatics Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 19
    • 34648843224 scopus 로고    scopus 로고
    • Genetic data and the listing of species under the U.S. Endangered Species Act
    • Fallon, S. M. 2007. Genetic data and the listing of species under the U.S. Endangered Species Act. Conservation Biology 21: 1186-1195.
    • (2007) Conservation Biology , vol.21 , pp. 1186-1195
    • Fallon, S.M.1
  • 20
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush, D., M. Stephens, and J. K. Pritchard. 2003. Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 22
    • 70349827382 scopus 로고    scopus 로고
    • Taxonomic confusion permits the unchecked invasion of vernal pools in California by low mannagrass (G lyceria declinata)
    • Gerlach, J. D., B. S. Bushman, J. K. McKay, and H. Meimberg. 2009. Taxonomic confusion permits the unchecked invasion of vernal pools in California by low mannagrass (G lyceria declinata). Invasive Plant Science and Management 2: 92-97.
    • (2009) Invasive Plant Science and Management , vol.2 , pp. 92-97
    • Gerlach, J.D.1    Bushman, B.S.2    McKay, J.K.3    Meimberg, H.4
  • 23
    • 85007320774 scopus 로고
    • FSTAT (version 1.2): A computer program to calculate F-statistics
    • Goudet, J. 1995. FSTAT (version 1.2): A computer program to calculate F-statistics. Journal of Heredity 86: 485-486.
    • (1995) Journal of Heredity , vol.86 , pp. 485-486
    • Goudet, J.1
  • 24
    • 0036695118 scopus 로고    scopus 로고
    • Mathematical consequences of the genealogical species concept
    • Hudson, R. R., and J. A. Coyne. 2002. Mathematical consequences of the genealogical species concept. Evolution 56: 1557-1565.
    • (2002) Evolution , vol.56 , pp. 1557-1565
    • Hudson, R.R.1    Coyne, J.A.2
  • 25
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogeny
    • Huelsenbeck, J. P., and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 26
    • 4344679902 scopus 로고    scopus 로고
    • Taxonomic inflation: Its influence on macroecology and conservation
    • Isaac, N. J. B., J. Mallet, and G. M. Mace. 2004. Taxonomic inflation: Its influence on macroecology and conservation. Trends in Ecology & Evolution 19: 464-469.
    • (2004) Trends in Ecology & Evolution , vol.19 , pp. 464-469
    • Isaac, N.J.B.1    Mallet, J.2    Mace, G.M.3
  • 27
    • 51649095312 scopus 로고    scopus 로고
    • STand its relatives do not measure differentiation
    • STand its relatives do not measure differentiation. Molecular Ecology 17: 4015-4026.
    • (2008) Molecular Ecology , vol.17 , pp. 4015-4026
    • Jost, L.1
  • 29
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16: 111-120.
    • (1980) Journal of Molecular Evolution , vol.16 , pp. 111-120
    • Kimura, M.1
  • 30
    • 33750969109 scopus 로고    scopus 로고
    • Comprehensive genetic analyses reveal evolutionary distinction of a mouse. Zapus hudsonius preblei. proposed for delisting from the U.S. Endangered Species Act
    • King, T. L., J. F. Switzer, C. L. Morrison, M. S. Eackles, C. C. Young, B. A. Lubinski, and P. Cryan. 2006. Comprehensive genetic analyses reveal evolutionary distinction of a mouse. Zapus hudsonius preblei. proposed for delisting from the U.S. Endangered Species Act. Molecular Ecology 15: 4331-4359.
    • (2006) Molecular Ecology , vol.15 , pp. 4331-4359
    • King, T.L.1    Switzer, J.F.2    Morrison, C.L.3    Eackles, M.S.4    Young, C.C.5    Lubinski, B.A.6    Cryan, P.7
  • 32
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics 5: 150-163.
    • (2004) Briefings in Bioinformatics , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 35
    • 0028975790 scopus 로고
    • A species definition for the modern synthesis
    • Mallet, J. 1995. A species definition for the modern synthesis. Trends in Ecology & Evolution 10: 294-299.
    • (1995) Trends in Ecology & Evolution , vol.10 , pp. 294-299
    • Mallet, J.1
  • 36
    • 33747069437 scopus 로고    scopus 로고
    • Delimiting species: Comparing methods for Mendelian characters using lizards of the Sceloporus grammicus (Squamata: Phrynosomatidae) complex
    • Marshall, J. C., E. Arevalo, E. Benavides, J. L. Sites, and J. W. Sites. 2006. Delimiting species: Comparing methods for Mendelian characters using lizards of the Sceloporus grammicus (Squamata: Phrynosomatidae) complex. Evolution 60: 1050-1065.
    • (2006) Evolution , vol.60 , pp. 1050-1065
    • Marshall, J.C.1    Arevalo, E.2    Benavides, E.3    Sites, J.L.4    Sites, J.W.5
  • 38
    • 0036302738 scopus 로고    scopus 로고
    • Conservation implications of the reproductive ecology of Agalinis acuta (Scrophulariaceae)
    • Neel, M. C. 2002. Conservation implications of the reproductive ecology of Agalinis acuta (Scrophulariaceae). American Journal of Botany 89: 972-980.
    • (2002) American Journal of Botany , vol.89 , pp. 972-980
    • Neel, M.C.1
  • 39
    • 13444292888 scopus 로고    scopus 로고
    • Section-level relationships of North American Agalinis (Orobanchaceae) based on DNA sequence analysis of three chloroplast gene regions
    • Neel, M. C., and M. P. Cummings. 2004. Section-level relationships of North American Agalinis (Orobanchaceae) based on DNA sequence analysis of three chloroplast gene regions. BMC Evolutionary Biology 4: 15.
    • (2004) BMC Evolutionary Biology , vol.4 , pp. 15
    • Neel, M.C.1    Cummings, M.P.2
  • 41
    • 0020965531 scopus 로고
    • Accuracy of estimated phylogenetic trees from molecular data
    • Nei, M., F. Tajima, and Y. Tateno. 1983. Accuracy of estimated phylogenetic trees from molecular data. Journal of Molecular Evolution 19: 153-170.
    • (1983) Journal of Molecular Evolution , vol.19 , pp. 153-170
    • Nei, M.1    Tajima, F.2    Tateno, Y.3
  • 42
    • 0025591741 scopus 로고
    • An amplification of the phylogenetic species concept
    • Nixon, K. C., and Q. D. Wheeler. 1990. An amplification of the phylogenetic species concept. Cladistics 6: 211-223.
    • (1990) Cladistics , vol.6 , pp. 211-223
    • Nixon, K.C.1    Wheeler, Q.D.2
  • 44
    • 0030782517 scopus 로고    scopus 로고
    • An empirical evaluation of genetic distance statistics using microsatellite data from bear (Ursidae) populations
    • Paetkau, D., L. P. Waits, P. L. Clarkson, L. Craighead, and C. Strobeck. 1997. An empirical evaluation of genetic distance statistics using microsatellite data from bear (Ursidae) populations. Genetics 147: 1943-1957.
    • (1997) Genetics , vol.147 , pp. 1943-1957
    • Paetkau, D.1    Waits, L.P.2    Clarkson, P.L.3    Craighead, L.4    Strobeck, C.5
  • 47
    • 84858383348 scopus 로고    scopus 로고
    • Characterization of 21 microsatellites within Agalinis acuta (Orobanchaceae) and cross-species amplification among closely related taxa
    • Pettengill, J. B., R. K. Burnett, and M. C. Neel. 2009. Characterization of 21 microsatellites within Agalinis acuta (Orobanchaceae) and cross-species amplification among closely related taxa. Molecular Ecology Resources 9: 1375-1379.
    • (2009) Molecular Ecology Resources , vol.9 , pp. 1375-1379
    • Pettengill, J.B.1    Burnett, R.K.2    Neel, M.C.3
  • 48
    • 53749086311 scopus 로고    scopus 로고
    • Phylogenetic patterns and conservation among North American members of the genus Agalinis (Orobanchaceae)
    • Pettengill, J. B., and M. C. Neel. 2008. Phylogenetic patterns and conservation among North American members of the genus Agalinis (Orobanchaceae). BMC Evolutionary Biology 8: 264.
    • (2008) BMC Evolutionary Biology , vol.8 , pp. 264
    • Pettengill, J.B.1    Neel, M.C.2
  • 49
    • 77955987637 scopus 로고    scopus 로고
    • An evaluation of candidate plant DNA barcodes and assignment methods for diagnosing species in the genus Agalinis (Orobanchaceae)
    • Pettengill, J. B., and M. C. Neel. 2010. An evaluation of candidate plant DNA barcodes and assignment methods for diagnosing species in the genus Agalinis (Orobanchaceae). American Journal of Botany 97: 1391-1406.
    • (2010) American Journal of Botany , vol.97 , pp. 1391-1406
    • Pettengill, J.B.1    Neel, M.C.2
  • 50
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard, J. K., M. Stephens, and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 51
    • 0000262278 scopus 로고
    • Genepop (version 1.2): Population genetics software for exact tests and ecumenicism
    • Raymond, M., and F. Rousset. 1995. Genepop (version 1.2): Population genetics software for exact tests and ecumenicism. Journal of Heredity 86: 248-249.
    • (1995) Journal of Heredity , vol.86 , pp. 248-249
    • Raymond, M.1    Rousset, F.2
  • 52
    • 1342331102 scopus 로고    scopus 로고
    • DISTRUCT: A program for the graphical display of population structure
    • Rosenberg, N. A. 2004. DISTRUCT: A program for the graphical display of population structure. Molecular Ecology Notes 4: 137-138.
    • (2004) Molecular Ecology Notes , vol.4 , pp. 137-138
    • Rosenberg, N.A.1
  • 53
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP: DNA polymorphism analyses by the coalescent and other methods
    • Rozas, J., J. C. S á nchez-DelBarrio, X. Messeguer, and R. Rozas. 2003. DnaSP: DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sánchez-DelBarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 54
    • 0023375195 scopus 로고
    • The neighbor-joining method-A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method-A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406-425.
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 58
    • 0029786076 scopus 로고    scopus 로고
    • Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA
    • Takezaki, N., and M. Nei. 1996. Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 144: 389-399.
    • (1996) Genetics , vol.144 , pp. 389-399
    • Takezaki, N.1    Nei, M.2
  • 59
    • 0009708572 scopus 로고
    • Determination of Agalinis acuta to be an endangered species
    • U.S. Fish and Wildlife Service
    • U. S. Fish and Wildlife Service. 1988. Determination of Agalinis acuta to be an endangered species. Federal Register 53: 34701-34705.
    • (1988) Federal Register , vol.53 , pp. 34701-34705
  • 60
    • 84858400500 scopus 로고    scopus 로고
    • Endangered and threatened wildlife and plants: Reclassification of Erigeron maguirei (Maguire daisy) from endangered to threatened
    • U.S. Fish and Wildlife Service
    • U. S. Fish and Wildlife Service. 1996. Endangered and threatened wildlife and plants: Reclassification of Erigeron maguirei (Maguire daisy) from endangered to threatened. Federal Register 61: 31054-31058.
    • (1996) Federal Register , vol.61 , pp. 31054-31058
  • 61
    • 0011245340 scopus 로고
    • Final rule: Delisting of Echinocereus engelmannii var. purpureus (purple-spined hedgehog cactus)
    • U.S. Fish and Wildlife Service
    • U. S. Fish and Wildlife Service. 1989a. Final rule: Delisting of Echinocereus engelmannii var. purpureus (purple-spined hedgehog cactus). Federal Register 54: 48749-48751.
    • (1989) Federal Register , vol.54 , pp. 48749-48751
  • 63
    • 4444294419 scopus 로고    scopus 로고
    • Final rule to remove the plant Echinocereus lloydii (Lloyd ' s hedgehog cactus) from the Federal List of Endangered and Threatened Plants
    • U.S. Fish and Wildlife Service
    • U. S. Fish and Wildlife Service. 1999. Final rule to remove the plant Echinocereus lloydii (Lloyd ' s hedgehog cactus) from the Federal List of Endangered and Threatened Plants. Federal Register 64: 33796-33800.
    • (1999) Federal Register , vol.64 , pp. 33796-33800
  • 64
    • 84858427241 scopus 로고
    • § 1531-§ 1544. 93rd United States Congress, Washington, D.C., USA
    • U. S. Congress. 1973. Endangered Species Act 16 U.S.C. § 1531-§ 1544. 93rd United States Congress, Washington, D.C., USA.
    • (1973) Endangered Species Act 16 U.S. C
    • Congress, U.S.1
  • 65
    • 0004273828 scopus 로고    scopus 로고
    • National Plant Data Center. Website National Plant Data Center, Baton Rouge, Louisiana, USA, Usdanrcs
    • USDA NRCS. 2004. The PLANTS Database. National Plant Data Center. Website http://plants.usda.gov. National Plant Data Center, Baton Rouge, Louisiana, USA.
    • (2004) The PLANTS Database
  • 66
    • 0000314099 scopus 로고
    • Ecological species, multispecies, and oaks
    • Van Valen, L. 1976. Ecological species, multispecies, and oaks. Taxon 25: 233-239.
    • (1976) Taxon , vol.25 , pp. 233-239
    • van Valen, L.1
  • 67
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir, B. S., and C. C. Cockerham. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.