Rapid Isolation and Cross-Amplification of Microsatellite Markers in Plectritis Congesta (Valerianaceae) with 454 Sequencing

American Journal of Botany

Volumn 98, Issue 12, 2011, Pages

  McEwen, Jamie R ^a   Vamosi, Jana C ^a   Rogers, Sean M ^a  

^a UNIVERSITY OF CALGARY   (Canada)

Author keywords

454 sequencing; Diploidization; Microsatellite; Plectritis; Polyploidy; Valerianceae

Indexed keywords

MICROSATELLITE DNA; PLANT DNA;

ALLELE; DICOTYLEDON; EVOLUTIONARY BIOLOGY; GENETIC MARKER; GENETIC VARIATION; HETEROZYGOSITY; OPTIMIZATION; POLYPLOIDY; REPRODUCTIVE STRATEGY;

ALLELE; ARTICLE; DNA SEQUENCE; GENETIC MARKER; GENETICS; HETEROZYGOTE; ISOLATION AND PURIFICATION; METHODOLOGY; MOLECULAR GENETICS; NUCLEIC ACID AMPLIFICATION; NUCLEOTIDE MOTIF; NUCLEOTIDE SEQUENCE; PLOIDY; SPECIES DIFFERENCE; VALERIANACEAE;

ALLELES; DNA, PLANT; GENETIC MARKERS; HETEROZYGOTE; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID AMPLIFICATION TECHNIQUES; NUCLEOTIDE MOTIFS; PLOIDIES; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; VALERIANACEAE;

PLECTRITIS; PLECTRITIS CONGESTA; PLECTRITIS MACROCERA; VALERIANACEAE;

EID: 84858433210     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.1100160     Document Type: Article

References (11)

1. Bell, C. D., and M. J. Donoghue. 2005. Phylogeny and biogeography of Valerianaceae (Dipsacales) with special reference to the South American valerians. Organisms, Diversity & Evolution 5: 147-159.
2. Blanca, J., and B. Chevreux. 2010. sffextract. COMAV Institute, Universidad Politécnica, Valencia, Spain.
3. Csencsics, D., S. Brodbeck, and R. Holderegger. 2010. Cost-effective, species-specific microsatellite development for the endangered dwarf bulrush (Typha minima) using next-generation sequencing technology. Journal of Heredity 101: 789-793.
4. Engel, K. 1976. Beirtrage zur systematik der Valerianaceae unter besonderes Berücksichtigung cytosystematischer ergebnisee. Dissertation, Justus Liebig-Universität Giessen, Giessen, Germany.
5. Faircloth, B. 2008. MSATCOMMANDER: Detection of microsatellite repeat arrays and automated, locus-specific primer design. Molecular Ecology Resources 8: 92-94.
6. Glenn, T. C., and N. A. Schable. 2005. Isolating microsatellite DNA loci. Methods in Enzymology 395: 202-222.
7. Gorden, A. 2010. FASTX Toolkit. Howard Hughes Medical Institute, Cold Spring Harbour, New York, USA.
8. Raymond, M., and F. Rousset. 1995. GENEPOP (version 1.2): Population genetics software for exact tests and ecumenicism. Journal of Heredity 86: 248-249.
9. Rousset, F. 2008. GENEPOP' 007: A complete reimplementation of the GENEPOP software for Windows and Linux. Moleculary Ecology Resources 8: 103-106.
10. Rozen, S., and H. J. Skaletsky. 2000. Primer3 on the WWW for general users and for biologist programmers. Humana Press, Totowa, New Jersey, USA.
11. Thrall, P. H., and A. Young. 2000. AUTOTET: A program for analysis of autotetraploid genotypic data. Journal of Heredity 91: 348-349.