De novo analysis and functional classification of the transcriptome of the root lesion nematode, Pratylenchus thornei, after 454 GS FLX sequencing

International Journal for Parasitology

Volumn 42, Issue 3, 2012, Pages 225-237

  Nicol, Paul ^a   Gill, Reetinder ^a   Fosu Nyarko, John ^a   Jones, Michael G K ^a  

^a MURDOCH UNIVERSITY   (Australia)

Author keywords

454 GS FLX sequencing; Annotation; Functional classification; Parasitism genes; Pratylenchus thornei; Root lesion nematode; Transcriptome

Indexed keywords

ANNEXIN; BINDING PROTEIN; CALRETICULIN; CARBOHYDRATE BINDING PROTEIN; CARBOHYDRATE ESTERASE; CARRIER PROTEIN; CHORISMATE MUTASE; CONTIG; CYSTEINE PROTEINASE; ESTERASE; FATTY ACID RETINOID BINDING PROTEIN; GLUCAN SYNTHASE; GLUTATHIONE PEROXIDASE; GLUTATHIONE TRANSFERASE; GLYCOSIDASE; GLYCOSYLTRANSFERASE; NEUROPEPTIDE; PEROXIREDOXIN; POLYSACCHARIDE LYASE; PROTEIN; PROTEIN PRECURSOR; RAN BP LIKE PROTEIN; TRANSCRIPTOME; TRANSTHYRETIN LIKE PROTEIN; TRANSTHYRETIN LIKE PROTEIN PRECURSOR; UBIQUITIN EXTENSION PROTEIN; UNCLASSIFIED DRUG; VENOM ALLERGEN LIKE PROTEIN; XYLAN ENDO 1,3 BETA XYLOSIDASE;

CARBOHYDRATE; ENDOPARASITE; ENZYME ACTIVITY; GENE EXPRESSION; GENE TRANSFER; GENETIC ANALYSIS; NEMATODE; PARASITISM; PEPTIDE; PROTEIN;

ARTICLE; CAENORHABDITIS ELEGANS; CELL WALL; ENDOPARASITE; EXPRESSED SEQUENCE TAG; GENE EXPRESSION; GENE FUNCTION; GENE IDENTIFICATION; GENE PRODUCT; GENE TECHNOLOGY; HETERODERIDAE; HORIZONTAL GENE TRANSFER; HOST RESISTANCE; MELOIDOGYNIDAE; NEMATODE; NEMATODE LIFE CYCLE STAGE; NEXT GENERATION SEQUENCING; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRATYLENCHUS COFFEAE; PRATYLENCHUS PENETRANS; PRATYLENCHUS THORNEI; PRATYLENCHUS VULNUS; PROTEIN EXPRESSION; PROTEIN FAMILY; RADOPHOLUS SIMILIS; RNA INTERFERENCE; SEQUENCE HOMOLOGY; UNINDEXED SEQUENCE;

ANIMALS; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION PROFILING; HELMINTH PROTEINS; HORDEUM; MOLECULAR SEQUENCE ANNOTATION; PLANT DISEASES; PLANT ROOTS; SEQUENCE ANALYSIS, DNA; TRANSCRIPTOME; TRITICUM; TYLENCHOIDEA;

BACTERIA (MICROORGANISMS); CAENORHABDITIS ELEGANS; HETERODERIDAE; HORDEUM; MELOIDOGYNIDAE; NEMATODA; PRATYLENCHUS COFFEAE; PRATYLENCHUS PENETRANS; PRATYLENCHUS THORNEI; PRATYLENCHUS VULNUS; RADOPHOLUS SIMILIS; TRITICUM AESTIVUM;

EID: 84858277693     PISSN: 00207519     EISSN: 18790135     Source Type: Journal    
DOI: 10.1016/j.ijpara.2011.11.010     Document Type: Article

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