-
1
-
-
84855460321
-
Flexibility and binding affinity in protein-ligand, protein-protein and multi-component protein interactions: Limitations of current computational approaches
-
Tuffery, P. & Derreumaux, P. Flexibility and binding affinity in protein-ligand, protein-protein and multi-component protein interactions: limitations of current computational approaches. J. R. Soc. Interface 9, 20-33.
-
J. R. Soc. Interface
, vol.9
, pp. 20-33
-
-
Tuffery, P.1
Derreumaux, P.2
-
2
-
-
33846424559
-
Water at biomolecular binding interfaces
-
Li Z., and Lazaridis T. Water at biomolecular binding interfaces Phys. Chem. Chem. Phys. 9 2007 573 581
-
(2007)
Phys. Chem. Chem. Phys.
, vol.9
, pp. 573-581
-
-
Li, Z.1
Lazaridis, T.2
-
3
-
-
0001289724
-
Einfluss der Configuration auf die Wirkung der Enzyme
-
Fischer E. Einfluss der Configuration auf die Wirkung der Enzyme Ber. Dtsch. Chem. Ges. 27 1894 2984 2993
-
(1894)
Ber. Dtsch. Chem. Ges.
, vol.27
, pp. 2984-2993
-
-
Fischer, E.1
-
4
-
-
0001858251
-
Application of a theory of enzyme specificity to protein synthesis
-
Koshland D.E. Application of a theory of enzyme specificity to protein synthesis Proc. Natl Acad. Sci. USA 44 1958 98 104
-
(1958)
Proc. Natl Acad. Sci. USA
, vol.44
, pp. 98-104
-
-
Koshland, D.E.1
-
5
-
-
0141522976
-
Uses of enthalpy-entropy compensation in protein research
-
DOI 10.1016/S0301-4622(03)00065-6
-
Lumry R. Uses of enthalpy-entropy compensation in protein research Biophys. Chem. 105 2003 545 557 (Pubitemid 37123083)
-
(2003)
Biophysical Chemistry
, vol.105
, Issue.2-3
, pp. 545-557
-
-
Lumry, R.1
-
6
-
-
0036120608
-
Enthalpy-entropy compensation: A phantom phenomenon
-
Cornish-Bowden A. Enthalpy-entropy compensation: a phantom phenomenon J. Biosci. 27 2002 121 126 (Pubitemid 34218614)
-
(2002)
Journal of Biosciences
, vol.27
, Issue.2
, pp. 121-126
-
-
Cornish-Bowden, A.1
-
7
-
-
0026587310
-
Co-operative interactions during protein folding
-
Horovitz A., and Fersht A.R. Co-operative interactions during protein folding J. Mol. Biol. 224 1992 733 740
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 733-740
-
-
Horovitz, A.1
Fersht, A.R.2
-
9
-
-
0034801468
-
An enthalpic component in cooperativity: The relationship between enthalpy, entropy, and noncovalent structure in weak associations
-
DOI 10.1021/ja003016y
-
Calderone C.T., and Williams D.H. An enthalpic component in cooperativity: the relationship between enthalpy, entropy, and noncovalent structure in weak associations J. Am. Chem. Soc. 123 2001 6262 6267 (Pubitemid 32904653)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.26
, pp. 6262-6267
-
-
Calderone, C.T.1
Williams, D.H.2
-
10
-
-
0345099650
-
Cooperativity, partially bound states, and enthalpy-entropy compensation
-
DOI 10.1016/j.chembiol.2003.10.009
-
Hunter C.A., and Tomas S. Cooperativity, partially bound states, and enthalpy-entropy compensation Chem. Biol. 10 2003 1023 1032 (Pubitemid 37496432)
-
(2003)
Chemistry and Biology
, vol.10
, Issue.11
, pp. 1023-1032
-
-
Hunter, C.A.1
Tomas, S.2
-
11
-
-
0033301357
-
Pathways of antigen processing and presentation
-
Watts C., and Powis S. Pathways of antigen processing and presentation Rev. Immunogenet. 1 1999 60 74
-
(1999)
Rev. Immunogenet.
, vol.1
, pp. 60-74
-
-
Watts, C.1
Powis, S.2
-
12
-
-
0028348369
-
Crystal structure of the human class II MHC protein HLA-DR1 complexed with an influenza virus peptide
-
DOI 10.1038/368215a0
-
Stern L.J., Brown J.H., Jardetzky T.S., Gorga J.C., Urban R.G., Strominger J.L., and Wiley D.C. Crystal structure of the human class II MHC protein HLA-DR1 complexed with an influenza virus peptide Nature 368 1994 215 221 (Pubitemid 24108837)
-
(1994)
Nature
, vol.368
, Issue.6468
, pp. 215-221
-
-
Stern, L.J.1
Brown, J.H.2
Jardetzky, T.S.3
Gorga, J.C.4
Urban, R.G.5
Strominger, J.L.6
Wiley, D.C.7
-
13
-
-
59949104315
-
Flexibility of the MHC class II peptide binding cleft in the bound, partially filled, and empty states: A molecular dynamics simulation study
-
Yaneva R., Springer S., and Zacharias M. Flexibility of the MHC class II peptide binding cleft in the bound, partially filled, and empty states: a molecular dynamics simulation study Biopolymers 91 2009 14 27
-
(2009)
Biopolymers
, vol.91
, pp. 14-27
-
-
Yaneva, R.1
Springer, S.2
Zacharias, M.3
-
14
-
-
0030764473
-
HLA-DM stabilizes empty HLA-DR molecules in a chaperone-like fashion
-
DOI 10.1016/S0165-2478(97)00061-8, PII S0165247897000618
-
vogt A.B., Moldenhauer G., Hammerling G.J., and Kropshofer H. HLA-DM stabilizes empty HLA-DR molecules in a chaperone-like fashion Immunol. Lett. 57 1997 209 211 (Pubitemid 27319340)
-
(1997)
Immunology Letters
, vol.57
, Issue.1-3
, pp. 209-211
-
-
Vogt, A.B.1
Moldenhauer, G.2
Hammerling, G.J.3
Kropshofer, H.4
-
15
-
-
0026584496
-
How MHC class II molecules work: Peptide-dependent completion of protein folding
-
Sadegh-Nasseri S., and Germain R.N. How MHC class II molecules work: peptide-dependent completion of protein folding Immunol. Today 13 1992 43 46
-
(1992)
Immunol. Today
, vol.13
, pp. 43-46
-
-
Sadegh-Nasseri, S.1
Germain, R.N.2
-
16
-
-
0025870669
-
A role for peptide in determining MHC class II structure
-
Sadegh-Nasseri S., and Germain R.N. A role for peptide in determining MHC class II structure Nature 353 1991 167 170 (Pubitemid 21912482)
-
(1991)
Nature
, vol.353
, Issue.6340
, pp. 167-170
-
-
Sadegh-Nasseri, S.1
Germain, R.N.2
-
17
-
-
0033120523
-
Stable peptide binding to MHC class II molecule is rapid and is determined by a receptive conformation shaped by prior association with low affinity peptides
-
Natarajan S.K., Assadi M., and Sadegh-Nasseri S. Stable peptide binding to MHC class II molecule is rapid and is determined by a receptive conformation shaped by prior association with low affinity peptides J. Immunol. 162 1999 4030 4036 (Pubitemid 29314785)
-
(1999)
Journal of Immunology
, vol.162
, Issue.7
, pp. 4030-4036
-
-
Natarajan, S.K.1
Assadi, M.2
Sadegh-Nasseri, S.3
-
18
-
-
0034695675
-
Determinants of the peptide-induced conformational change in the human class II major histocompatibility complex protein HLA-DR1
-
DOI 10.1074/jbc.275.3.2165
-
Sato A.K., Zarutskie J.A., Rushe M.M., Lomakin A., Natarajan S.K., and Sadegh-Nasseri S. Determinants of the peptide-induced conformational change in the human class II major histocompatibility complex protein HLA-DR1 J. Biol. Chem. 275 2000 2165 2173 (Pubitemid 30060846)
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.3
, pp. 2165-2173
-
-
Sato, A.K.1
Zarutskie, J.A.2
Rushe, M.M.3
Lomakin, A.4
Natarajan, S.K.5
Sadegh-Nasseri, S.6
Benedek, G.B.7
Stern, L.J.8
-
19
-
-
0033522437
-
A conformational change in the human major histocompatibility complex protein HLA-DR1 induced by peptide binding
-
Zarutskie J.A., Sato A.K., Rushe M.M., Chan I.C., Lomakin A., Benedek G.B., and Stern L.J. A conformational change in the human major histocompatibility complex protein HLA-DR1 induced by peptide binding Biochemistry 38 1999 5878 5887
-
(1999)
Biochemistry
, vol.38
, pp. 5878-5887
-
-
Zarutskie, J.A.1
Sato, A.K.2
Rushe, M.M.3
Chan, I.C.4
Lomakin, A.5
Benedek, G.B.6
Stern, L.J.7
-
20
-
-
17144383216
-
Cooperativity during the formation of peptide/MHC class II complexes
-
DOI 10.1021/bi048675s
-
Anderson M.W., and Gorski J. Cooperativity during the formation of peptide/MHC class II complexes Biochemistry 44 2005 5617 5624 (Pubitemid 40525099)
-
(2005)
Biochemistry
, vol.44
, Issue.15
, pp. 5617-5624
-
-
Anderson, M.W.1
Gorski, J.2
-
21
-
-
34249803281
-
Cooperativity of hydrophobic anchor interactions: Evidence for epitope selection by MHC class II as a folding process
-
Ferrante A., and Gorski J. Cooperativity of hydrophobic anchor interactions: evidence for epitope selection by MHC class II as a folding process J. Immunol. 178 2007 7181 7189 (Pubitemid 46847444)
-
(2007)
Journal of Immunology
, vol.178
, Issue.11
, pp. 7181-7189
-
-
Ferrante, A.1
Gorski, J.2
-
22
-
-
0025126043
-
Strategy for analysing the co-operativity of intramolecular interactions in peptides and proteins
-
Horovitz A., and Fersht A.R. Strategy for analysing the co-operativity of intramolecular interactions in peptides and proteins J. Mol. Biol. 214 1990 613 617
-
(1990)
J. Mol. Biol.
, vol.214
, pp. 613-617
-
-
Horovitz, A.1
Fersht, A.R.2
-
23
-
-
0030478012
-
Coupled folding and site-specific binding of the GCN4-bZIP transcription factor to the AP-1 and ATF/CREB DNA sites studied by microcalorimetry
-
DOI 10.1021/bi961312a
-
Berger C., Jelesarov I., and Bosshard H.R. Coupled folding and site-specific binding of the GCN4-bZIP transcription factor to the AP-1 and ATF/CREB DNA sites studied by microcalorimetry Biochemistry 35 1996 14984 14991 (Pubitemid 26423835)
-
(1996)
Biochemistry
, vol.35
, Issue.47
, pp. 14984-14991
-
-
Berger, C.1
Jelesarov, I.2
Bosshard, H.R.3
-
24
-
-
0029044394
-
Calorimetric analysis of lambda cI repressor binding to DNA operator sites
-
Merabet E., and Ackers G.K. Calorimetric analysis of lambda cI repressor binding to DNA operator sites Biochemistry 34 1995 8554 8563
-
(1995)
Biochemistry
, vol.34
, pp. 8554-8563
-
-
Merabet, E.1
Ackers, G.K.2
-
25
-
-
0024378717
-
Role of the hydrophobic effect in stability of site-specific protein-DNA complexes
-
DOI 10.1016/0022-2836(89)90608-6
-
Ha J.H., Spolar R.S., and Record M.T. Jr Role of the hydrophobic effect in stability of site-specific protein-DNA complexes J. Mol. Biol. 209 1989 801 816 (Pubitemid 20046133)
-
(1989)
Journal of Molecular Biology
, vol.209
, Issue.4
, pp. 801-816
-
-
Ha, J.-H.1
Spolar, R.S.2
Record Jr., M.T.3
-
26
-
-
0034435652
-
Structural and thermodynamic strategies for site-specific DNA binding proteins
-
DOI 10.1016/S0969-2126(00)00501-3, PII S0969212600005013
-
Jen-Jacobson L., Engler L.E., and Jacobson A.L. Structural and thermodynamic strategies for site-specific DNA binding proteins Structure 8 2000 1015 1023 (Pubitemid 32667465)
-
(2000)
Structure
, vol.8
, Issue.10
, pp. 1015-1023
-
-
Jen-Jacobson, L.1
Engler, L.E.2
Jacobson, L.A.3
-
27
-
-
33847798713
-
Enthalpy-entropy compensation. 1. Some fundamental statistical problems associated with the analysis of van't Hoff and Arrhenius data
-
Krug R.R., Hunter W.G., and Grieger R.A. Enthalpy-entropy compensation. 1. Some fundamental statistical problems associated with the analysis of van't Hoff and Arrhenius data J. Phys. Chem. 80 1976 2335 2341
-
(1976)
J. Phys. Chem.
, vol.80
, pp. 2335-2341
-
-
Krug, R.R.1
Hunter, W.G.2
Grieger, R.A.3
-
28
-
-
33847798413
-
Enthalpy-entropy compensation. 2. Separation of the chemical from the statistical effect
-
Krug R.R., Hunter W.G., and Grieger R.A. Enthalpy-entropy compensation. 2. Separation of the chemical from the statistical effect J. Phys. Chem. 80 1976 2341 2351
-
(1976)
J. Phys. Chem.
, vol.80
, pp. 2341-2351
-
-
Krug, R.R.1
Hunter, W.G.2
Grieger, R.A.3
-
29
-
-
0242585455
-
Configurational entropy and cooperativity between ligand binding and dimerization in glycopeptide antibiotics
-
DOI 10.1021/ja027780r
-
Jusuf S., Loll P.J., and Axelsen P.H. Configurational entropy and cooperativity between ligand binding and dimerization in glycopeptide antibiotics J. Am. Chem. Soc. 125 2003 3988 3994 (Pubitemid 36512391)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.13
, pp. 3988-3994
-
-
Jusuf, S.1
Loll, P.J.2
Axelsen, P.H.3
-
30
-
-
0001199087
-
Entropy-enthalpy compensation: Conformational fluctuation and induced-fit
-
Qian H. Entropy-enthalpy compensation: conformational fluctuation and induced-fit J. Chem. Phys. 109 1998 10015
-
(1998)
J. Chem. Phys.
, vol.109
, pp. 10015
-
-
Qian, H.1
-
31
-
-
0026007230
-
Energy transfer between two peptides bound to one MHC class II molecule
-
Tampe R., Clark B.R., and McConnell H.M. Energy transfer between two peptides bound to one MHC class II molecule Science 254 1991 87 89 (Pubitemid 21917320)
-
(1991)
Science
, vol.254
, Issue.5028
, pp. 87-89
-
-
Tampe, R.1
Clark, B.R.2
McConnell, H.M.3
-
32
-
-
77953960092
-
Conformational heterogeneity of MHC class II induced upon binding to different peptides is a key regulator in antigen presentation and epitope selection
-
Sadegh-Nasseri S., Natarajan S., Chou C.L., Hartman I.Z., Narayan K., and Kim A. Conformational heterogeneity of MHC class II induced upon binding to different peptides is a key regulator in antigen presentation and epitope selection Immunol. Res. 47 2010 56 64
-
(2010)
Immunol. Res.
, vol.47
, pp. 56-64
-
-
Sadegh-Nasseri, S.1
Natarajan, S.2
Chou, C.L.3
Hartman, I.Z.4
Narayan, K.5
Kim, A.6
-
33
-
-
0026571278
-
The human class II MHC protein HLA-DR1 assembles as empty alpha beta heterodimers in the absence of antigenic peptide
-
Stern L.J., and Wiley D.C. The human class II MHC protein HLA-DR1 assembles as empty alpha beta heterodimers in the absence of antigenic peptide Cell 68 1992 465 477
-
(1992)
Cell
, vol.68
, pp. 465-477
-
-
Stern, L.J.1
Wiley, D.C.2
|