Diet creates metabolic niches in the "inmature gut" that shape microbial communities;La dieta crea nichos metabólicos en el "intestino inmaduro" que da forma a comunidades microbianas

Nutricion Hospitalaria

Volumn 26, Issue 6, 2011, Pages 1283-1295

  Poroyko, V ^a   Morowitz, M ^b   Bell, T ^c,e   Ulanov, A ^d   Wang, M ^d   Donovan, S ^d   Bao, N ^e   Gu, S ^e   Hong, L ^e   Alverdy, J C ^a   Bergelson, J ^a   Liu, D C ^a  

^a UNIVERSITY OF CHICAGO   (United States)

^b UNIVERSITY OF PITTSBURGH   (United States)

^c UNIVERSITY OF OXFORD   (United Kingdom)

^d UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^e SHANGHAI JIAO TONG UNIVERSITY SCHOOL OF MEDICINE   (China)

Author keywords

Breast milk; Diet; Human microbiota; Intestinal environment; Metabolomics; Prematurity

Indexed keywords

ANIMALIA; BACTERIA (MICROORGANISMS);

RNA 16S;

ALGORITHM; ANALYSIS OF VARIANCE; ANIMAL; ARTICLE; ARTIFICIAL MILK; BACTERIUM; BIOSYNTHESIS; BREAST FEEDING; CECUM; CHEMISTRY; DIET; FECES; GASTROINTESTINAL TRACT; GENETICS; GESTATIONAL AGE; GROWTH, DEVELOPMENT AND AGING; HUMAN; INFANT; MASS FRAGMENTOGRAPHY; METABOLOMICS; MICROBIOLOGY; NEWBORN; POLYMERASE CHAIN REACTION; PREMATURITY; PRINCIPAL COMPONENT ANALYSIS; STOMACH JUICE; SWINE;

ALGORITHMS; ANALYSIS OF VARIANCE; ANIMALS; BACTERIA; BREAST FEEDING; CECUM; DIET; FECES; GAS CHROMATOGRAPHY-MASS SPECTROMETRY; GASTROINTESTINAL CONTENTS; GASTROINTESTINAL TRACT; GESTATIONAL AGE; HUMANS; INFANT; INFANT FORMULA; INFANT, NEWBORN; INFANT, PREMATURE; METABOLOMICS; POLYMERASE CHAIN REACTION; PRINCIPAL COMPONENT ANALYSIS; RNA, RIBOSOMAL, 16S; SWINE;

EID: 84858183787     PISSN: 02121611     EISSN: 16995198     Source Type: Journal    
DOI: 10.3305/nh.2011.26.6.5362     Document Type: Article

References (35)

1. Palmer C, Bik EM, DiGiulio DB, David A. Relman DA, Brown PO. Development of the human infant intestinal microbiota. PLoS Biol 2007; 5: e177.
2. Mackie RI, Sghir A, Gaskins HR. Developmental microbial ecology of the neonatal gastrointestinal tract. Am J Clin Nutr 1999; 69: 1035-1045.
3. Li M, Wang B, Zhang M, Rantalainen M, Wang S, Zhou H, et al. Symbiotic gut microbes modulate human metabolic phenotypes. Proc Natl Acad Sci USA 2008; 105: 2117-2122.
4. Turnbaugh PJ, Gordon JI. The core gut microbiome, energy balance and obesity. J Physiol 2009; 587: 4153-4158.
5. Claud EC, Walker WA. Hypothesis: Inappropriate colonization of the premature intestine can cause neonatal necrotizing enterocolitis. FASEB J 2001; 15: 1398-1403.
6. Lin PW, Stoll BJ. Necrotising enterocolitis. Lancet 2006; 368: 1271-1283.
7. Magne F, Abély M, Boyer F, Morville P, Pochart P, Suau A. Low species diversity and high interindividual variability in faeces of preterm infants as revealed by sequences of 16S rRNA genes and PCR-temporal temperature gradient gel electrophoresis profiles. FEMS Microbiol Ecol 2006; 57: 128-138.
8. Schwiertz A, Gruhl B, Löbnitz M, Michel P, Radke M, Blaut M. Development of the intestinal bacterial composition in hospitalized preterm infants in comparison with breast-fed, fullterm infants. Pediatr Res 2003; 54: 393-399.
9. Butel MJ, Suau A, Campeotto F, Magne F, Aires J, Ferraris L et al. Conditions of bifidobacterial colonization in preterm infants: A prospective analysis. J Pediatr Gastroenterol Nutr 2007; 44: 577-582.
10. Mandar R, Mikelsaar M. Transmission of mother's microflora to the newborn at birth. Biol Neonate 1996; 69: 30-35.
11. Grönlund MM, Gueimonde M, Laitinen K, Kociubinski G, Grönroos T, Salminen S et al. Maternal breast-milk and intestinal bifidobacteria guide the compositional development of the bifidobacterium microbiota in infants at risk of allergic disease. Clin Exp Allergy 2007; 37: 1764-1772.
12. Stewart JA, Chadwick VS, Murray A. Investigations into the influence of host genetics on the predominant eubacteria in the faecal microflora of children. J Med Microbiol 2005; 54: 1239-1242.
13. Penders J, Thijs C, Vink C, Stelma FF, Snijders B, Kummeling I, et al. Factors influencing the composition of the intestinal microbiota in early infancy. Pediatrics 2006; 118: 511-21
14. Hällström M, Eerola E, Vuento R, Janas M, Tammela O. Effects of mode of delivery and necrotising enterocolitis on the intestinal microflora in preterm infants. Eur J Clin Microbiol Infect Dis 2004; 23: 463-470.
15. Alverdy JC, Laughlin RS, Wu L. Influence of the critically ill state on host-pathogen interactions within the intestine: Gutderived sepsis redefined. Crit Care Med 2003; 31: 598-607.
16. Dethlefsen L, Huse S, Sogin ML, Relman DA. The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol 2008; 6: e280.
17. Harmsen HJ, Wildeboer-Veloo AC, Raangs GC, Wagendorp AA, Klijn N, Bindels JG et al. Analysis of intestinal flora development in breast-fed and formula-fed infants by using molecular identification and detection methods. J Pediatr Gastroenterol Nutr 2000; 30: 61-67.
18. Penders J, Vink C, Driessen C, London N, Thijs C, Stobberingh EE. Quantification of bifidobacterium spp., escherichia coli and clostridium difficile in faecal samples of breast-fed and formula- fed infants by real-time PCR. FEMS Microbiol. Lett. 2005;243:141-147.
19. Lundequist B, Nord CE, Winberg J. The composition of the faecal microflora in breastfed and bottle fed infants from birth to eight weeks. Acta Paediatr Scand 1985; 74: 45-51.
20. Saric J, Wang Y, Li J, Coen M, Utzinger J, Marchesi JR et al. Species variation in the fecal metabolome gives insight into differential gastrointestinal function. J Proteome Res 2008; 7: 352-360.
21. Wikoff WR, Anfora AT, Liu J, Schultz PG, Lesley SA, Peters EC et al. Metabolomics analysis reveals large effects of gutmicroflora on mammalian blood metabolites. Proc Natl Acad Sci USA 2009; 106: 3698-3703.
22. Jansson J, Willing B, Lucio M, Fekete A, Dicksved J, Halfvarson J et al. Metabolomics reveals metabolic biomarkers of Crohn's disease. PLoS One 2009; 4: e6386.
23. Houle VM, Schroeder EA, Odle J, Donovan SM. Small intestinal disaccharidase activity and ileal villus height are increased in piglets consuming formula containing recombinant human insulin-like growth factor-I. Pediatr Res 1997; 42 (1): 78-86.
24. Wang Y, Hoenig JD, Malin KJ, Qamar S, Petrof EO, Sun J et al. 16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis. ISME J 2009; 3: 944-954.
25. Zoetendal EG, Heilig HG, Klaassens ES, Booijink CC, Kleerebezem M, Smidt H et al. Isolation of DNA from bacterial samples of the human gastrointestinal tract. Nature Protocols 2006; 1 (2): 870-873.
26. Poroyko V, White JR, Wang M, Donovan S, Alverdy J, Liu DC et al. Gut microbial gene expression in mother-fed and formulafed piglets. PLoS One 2010; 5 (8): e12459.
27. Wang Q, Garrity GM, Tiedje JM, Cole JR. Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy. Appl Environ Microbiol 2007; 73 (16): 5261-5267.
28. Roessner U, Willmitzer L, Fernie AR. High-Resolution Metabolic Phenotyping of Genetically and Environmentally Diverse Potato Tuber Systems. Identification of Phenocopies. Plant Physiology 2001; 127: 749-764.
29. Giammarinaro P, Paton JC. Role of RegM, a homologue of the catabolite repressor protein CcpA, in the virulence of streptococcus pneumoniae. Infect Immun 2002; 70: 5454-5461.
30. Almengor AC, Kinkel TL, Day SJ, McIver KS. The catabolite control protein CcpA binds to pmga and influences expression of the virulence regulator mga in the group A streptococcus. J Bacteriol 2007; 189: 8405-8416.
31. Shelburne SA 3rd, Keith D, Horstmann N, Sumby P, Davenport MT, Graviss EA et al. A direct link between carbohydrate utilization and virulence in the major human pathogen group A streptococcus. Proc Natl Acad Sci USA 2008; 105: 1698-1703.
32. Pedersen LL, Turco SJ. Galactofuranose metabolism: A potential target for antimicrobial chemotherapy. Cell Mol Life Sci 2003; 60: 259-266.
33. Yang X, Xie L, Li Y, Wei C. More than 9,000,000 unique genes in human gut bacterial community: Estimating gene numbers inside a human body. PLoS ONE 2009; 4: e6074.
34. Dominguez-Bello MG, Costello EK, Contreras M, Magris M, Hidalgo G, Fierer N et al. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci USA 2010; 107 (26): 11971-11975.
35. Fabich AJ, Jones SA, Chowdhury FZ, Cernosek A, Anderson A, Smalley D et al. Comparison of Carbon Nutrition for Pathogenic and Commensal Escherichia coli Strains in the Mouse Intestine. Infect Immun 2008; 76: 1143-1152.