-
1
-
-
34548752486
-
A Bayesian approach to estimation and testing in time-course microarray experiments
-
(Article 24)
-
Angelini, C., Canditiis, D., Mutarelli, M. and Pensky, M. 2007. A Bayesian approach to estimation and testing in time-course microarray experiments. Stat. Appl. Genet. Mol. Biol., 6 (Article 24)
-
(2007)
Stat. Appl. Genet. Mol. Biol
, vol.6
-
-
Angelini, C.1
de Canditiis, D.2
Mutarelli, M.3
Pensky, M.4
-
2
-
-
60349115489
-
Bayesian models for the two-sample time-course microarray experiments
-
Angelini, C., Canditiis, D. De and Pensky, M. 2009. Bayesian models for the two-sample time-course microarray experiments. Comput. Statist. Data Anal., 53: 1547-1565.
-
(2009)
Comput. Statist. Data Anal
, vol.53
, pp. 1547-1565
-
-
Angelini, C.1
de Canditiis, D.2
Pensky, M.3
-
3
-
-
55449128330
-
BATS: A Bayesian user-friendly software for analyzing time series microarray experiments
-
(Article 415)
-
Angelini, C., Cutillo, L., Canditiis, D. De, Mutarelli, M. and Pensky, M. 2008. BATS: A Bayesian user-friendly software for analyzing time series microarray experiments. BMC Bioinformatics, 9: 9-415. (Article 415)
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 9-415
-
-
Angelini, C.1
Cutillo, L.2
de Canditiis, D.3
Mutarelli, M.4
Pensky, M.5
-
4
-
-
0041346457
-
Continuous representations of time-series gene expression data
-
Bar-Joseph, Z., Gerber, G. K., Gifford, D. K., Jaakkola, T. S. and Simon, I. 2003. Continuous representations of time-series gene expression data. J. Comput. Biol., 10: 341-356.
-
(2003)
J. Comput. Biol
, vol.10
, pp. 341-356
-
-
Bar-Joseph, Z.1
Gerber, G.K.2
Gifford, D.K.3
Jaakkola, T.S.4
Simon, I.5
-
5
-
-
0001203039
-
Discreteness of Ferguson selections
-
Blackwell, D. 1973. Discreteness of Ferguson selections. Ann. Statist., 1: 356-358.
-
(1973)
Ann. Statist
, vol.1
, pp. 356-358
-
-
Blackwell, D.1
-
6
-
-
0002617436
-
Ferguson distributions via Pòlya urn schemes
-
Blackwell, D. and MacQueen, J. B. 1973. Ferguson distributions via Pòlya urn schemes. Ann. Statist., 1: 353-355.
-
(1973)
Ann. Statist
, vol.1
, pp. 353-355
-
-
Blackwell, D.1
MacQueen, J.B.2
-
7
-
-
30344439823
-
Using a calibration experiment to assess gene-specific information: Full Bayesian and empirical Bayesian models for two channel microarray data
-
Blangiardo, M., Toti, S., Giusti, B., Abbate, R., Magi, A., Poggi, F., Rossi, L., Torricelli, F. and Biggeri, A. 2006. Using a calibration experiment to assess gene-specific information: Full Bayesian and empirical Bayesian models for two channel microarray data. Bioinformatics, 22: 50-57.
-
(2006)
Bioinformatics
, vol.22
, pp. 50-57
-
-
Blangiardo, M.1
Toti, S.2
Giusti, B.3
Abbate, R.4
Magi, A.5
Poggi, F.6
Rossi, L.7
Torricelli, F.8
Biggeri, A.9
-
8
-
-
3042792342
-
A genomic view of estrogen actions in human breast cancer cells by expression profiling of the hormone-responsive trascriptome
-
Cicatiello, L., Scarfoglio, C., Altucci, L., Cancemi, M., Natoli, G., Facchiano, A., Iazzetti, G., Calogero, R., Biglia, N., Bortoli, M. De, Sfiligol, C., Sismondi, P., Bresciani, F. and Weisz, A. 2004. A genomic view of estrogen actions in human breast cancer cells by expression profiling of the hormone-responsive trascriptome. J. Mol. Endocrinol., 32: 719-775.
-
(2004)
J. Mol. Endocrinol
, vol.32
, pp. 719-775
-
-
Cicatiello, L.1
Scarfoglio, C.2
Altucci, L.3
Cancemi, M.4
Natoli, G.5
Facchiano, A.6
Iazzetti, G.7
Calogero, R.8
Biglia, N.9
de Bortoli, M.10
Sfiligol, C.11
Sismondi, P.12
Bresciani, F.13
Weisz, A.14
-
11
-
-
33845756481
-
Model-based clustering for expression data via a Dirichlet process mixture model
-
In: Do K. A., Müller P., Vannucci M., editors Cambridge, UK: Cambridge University Press
-
Dahl, D. B. Model-based clustering for expression data via a Dirichlet process mixture model. Bayesian Inference for Gene Expression and Proteomics. Edited by: Do, K. A., Müller, P. and Vannucci, M. pp.201-218. Cambridge, UK: Cambridge University Press.
-
Bayesian Inference for Gene Expression and Proteomics
, pp. 201-218
-
-
Dahl, D.B.1
-
12
-
-
0032441150
-
Cluster analysis and display of genomewide expression patterns
-
Eisen, M., Spellman, P., Brown, P and Botstein, D. 1998. Cluster analysis and display of genomewide expression patterns. Proc. Natl. Acad. Sci., 95: 14863-14868.
-
(1998)
Proc. Natl. Acad. Sci
, vol.95
, pp. 14863-14868
-
-
Eisen, M.1
Spellman, P.2
Brown, P.3
Botstein, D.4
-
13
-
-
84950937290
-
Bayesian density estimation and inference using mixtures
-
Escobar, M. D. and West, M. 1995. Bayesian density estimation and inference using mixtures. J. Amer. Statist. Assoc., 90: 577-588.
-
(1995)
J. Amer. Statist. Assoc
, vol.90
, pp. 577-588
-
-
Escobar, M.D.1
West, M.2
-
14
-
-
0001120413
-
A Bayesian analysis of some nonparametric problems
-
Ferguson, T. S. 1973. A Bayesian analysis of some nonparametric problems. Ann. Statist., 1(2): 209-230.
-
(1973)
Ann. Statist
, vol.1
, Issue.2
, pp. 209-230
-
-
Ferguson, T.S.1
-
15
-
-
28444499694
-
Random walk models for Bayesian clustering of gene expression profiles
-
Ferrazzi, F., Magni, P. and Bellazzi, R. 2005. Random walk models for Bayesian clustering of gene expression profiles. Appl. Bioinformatics, 4: 263-276.
-
(2005)
Appl. Bioinformatics
, vol.4
, pp. 263-276
-
-
Ferrazzi, F.1
Magni, P.2
Bellazzi, R.3
-
16
-
-
33645507298
-
A quantitative study of gene regulation involved in the immune response of Anopheline mosquitoes: An application of Bayesian hierarchical clustering of curves
-
Heard, N. A., Holmes, C. C. and Stephens, D. A. 2006. A quantitative study of gene regulation involved in the immune response of Anopheline mosquitoes: An application of Bayesian hierarchical clustering of curves. J. Amer. Statist. Assoc., 101: 18-29.
-
(2006)
J. Amer. Statist. Assoc
, vol.101
, pp. 18-29
-
-
Heard, N.A.1
Holmes, C.C.2
Stephens, D.A.3
-
17
-
-
1842486852
-
A split-merge Markov chain Monte Carlo procedure for the Dirichlet process mixture model
-
Jain, S. and Neal, R. M. 2004. A split-merge Markov chain Monte Carlo procedure for the Dirichlet process mixture model. J. Comput. Graph. Statist., 13: 158-182.
-
(2004)
J. Comput. Graph. Statist
, vol.13
, pp. 158-182
-
-
Jain, S.1
Neal, R.M.2
-
18
-
-
33845734547
-
Variable selection in clustering via Dirichlet process mixture models
-
Kim, S., Tadesse, M. G. and Vannucci, M. 2006. Variable selection in clustering via Dirichlet process mixture models. Biometrika, 93(4): 877-893.
-
(2006)
Biometrika
, vol.93
, Issue.4
, pp. 877-893
-
-
Kim, S.1
Tadesse, M.G.2
Vannucci, M.3
-
19
-
-
58149330805
-
A computational approach to the functional clustering of periodic gene-expression profiles
-
Kim, B. R., Zhang, L., Berg, A., Fan, J. and Wu, R. 2008. A computational approach to the functional clustering of periodic gene-expression profiles. Genetics, 180: 821-834.
-
(2008)
Genetics
, vol.180
, pp. 821-834
-
-
Kim, B.R.1
Zhang, L.2
Berg, A.3
Fan, J.4
Wu, R.5
-
20
-
-
43949118762
-
Bayesian functional data clustering for temporal microarray data
-
(Article 231897)
-
Ma, P., Zhong, W., Feng, Y. and Liu, J. S. 2008. Bayesian functional data clustering for temporal microarray data. Int. J. Plant Genom., 2008 (Article 231897)
-
(2008)
Int. J. Plant Genom
, vol.2008
-
-
Ma, P.1
Zhong, W.2
Feng, Y.3
Liu, J.S.4
-
22
-
-
15044352042
-
-
Wiley Series in Probability and Statistics, Wiley-Interscience, Hoboken, New Jersey
-
McLachlan, G., Do, K. A. and Ambroise, C. 2004. Analyzing Microarray Gene Expression Data Wiley Series in Probability and Statistics, Wiley-Interscience, Hoboken, New Jersey
-
(2004)
Analyzing Microarray Gene Expression Data
-
-
McLachlan, G.1
Do, K.A.2
Ambroise, C.3
-
23
-
-
0036739286
-
Bayesian infinite mixture model based clustering of gene expression profiles
-
Medvedovic, M. and Sivaganesan, S. 2002. Bayesian infinite mixture model based clustering of gene expression profiles. Bioinformatics, 18: 1194-1206.
-
(2002)
Bioinformatics
, vol.18
, pp. 1194-1206
-
-
Medvedovic, M.1
Sivaganesan, S.2
-
24
-
-
0038724494
-
Consensus clustering: A resampling-based method for class discovery and visualization of gene expression microarray data
-
Monti, S., Tamayo, P., Mesirov, J. and Golub, T. 2003. Consensus clustering: A resampling-based method for class discovery and visualization of gene expression microarray data. Mach. Learn., 52: 91-118.
-
(2003)
Mach. Learn
, vol.52
, pp. 91-118
-
-
Monti, S.1
Tamayo, P.2
Mesirov, J.3
Golub, T.4
-
25
-
-
0037562810
-
Estimating the error variance in nonparametric regression by a covariate-matched U-statistic
-
Müller, U., Schick, A. and Wefelmeyer, W. 2003. Estimating the error variance in nonparametric regression by a covariate-matched U-statistic. Statistics, 37: 179-188.
-
(2003)
Statistics
, vol.37
, pp. 179-188
-
-
Müller, U.1
Schick, A.2
Wefelmeyer, W.3
-
26
-
-
77950032550
-
Markov chain sampling methods for Dirichlet process mixture models
-
Neal, R. M. 2000. Markov chain sampling methods for Dirichlet process mixture models. J. Comput. Graph. Statist., 9: 249-265.
-
(2000)
J. Comput. Graph. Statist
, vol.9
, pp. 249-265
-
-
Neal, R.M.1
-
27
-
-
33747890494
-
A mixture model with random-effects components for clustering correlated gene-expression profiles
-
Ng, S. K., McLachlan, G. J., Wang, K., Ben-Tovim Jones, L. and Ng, S. W. 2006. A mixture model with random-effects components for clustering correlated gene-expression profiles. Bioinformatics, 22: 1745-1752.
-
(2006)
Bioinformatics
, vol.22
, pp. 1745-1752
-
-
Ng, S.K.1
McLachlan, G.J.2
Wang, K.3
Jones, B.-T.L.4
Ng, S.W.5
-
28
-
-
33747830882
-
Clustering microarray gene expression data using weighted Chinese restaurant process
-
Qin, Z. S. 2006. Clustering microarray gene expression data using weighted Chinese restaurant process. Bioinformatics, 22: 1988-1997.
-
(2006)
Bioinformatics
, vol.22
, pp. 1988-1997
-
-
Qin, Z.S.1
-
29
-
-
0037047161
-
Cluster analysis of gene expression dynamics
-
Ramoni, M., Sebastiani, P. and Kohane, I. S. 2002. Cluster analysis of gene expression dynamics. PNAS, 99(14): 9121-9126.
-
(2002)
PNAS
, vol.99
, Issue.14
, pp. 9121-9126
-
-
Ramoni, M.1
Sebastiani, P.2
Kohane, I.S.3
-
30
-
-
33644782021
-
Functional clustering by Bayesian wavelet methods
-
Ray, S. and Mallick, B. 2006. Functional clustering by Bayesian wavelet methods. J. R. Stat. Soc. Ser. B, 68: 302-332.
-
(2006)
J. R. Stat. Soc. Ser. B
, vol.68
, pp. 302-332
-
-
Ray, S.1
Mallick, B.2
-
31
-
-
24644519314
-
Significance analysis of time course microarray experiments (with supplementary material)
-
Storey, J. D., Xiao, W., Leek, J. T., Tompkins, R. G. and Davis, R. W. 2005. Significance analysis of time course microarray experiments (with supplementary material). Proc. Natl. Acad. Sci., 12: 12837-12842.
-
(2005)
Proc. Natl. Acad. Sci
, vol.12
, pp. 12837-12842
-
-
Storey, J.D.1
Xiao, W.2
Leek, J.T.3
Tompkins, R.G.4
Davis, R.W.5
-
32
-
-
20444465712
-
Bayesian variable selection in clustering high-dimensional data
-
Tadesse, M. G., Sha, N. and Vannucci, M. 2005. Bayesian variable selection in clustering high-dimensional data. J. Amer. Statist. Assoc., 100: 602-617.
-
(2005)
J. Amer. Statist. Assoc
, vol.100
, pp. 602-617
-
-
Tadesse, M.G.1
Sha, N.2
Vannucci, M.3
-
33
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
-
Tamayo, P., Slonim, D., Mesirov, J., Zhu, Q., Kitareewan, S., Dmitrovsky, E., Lander, E. S. and Golub, T. R. 1999. Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation. Proc. Natl. Acad. Sci., 96: 2907-2912.
-
(1999)
Proc. Natl. Acad. Sci
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
Lander, E.S.7
Golub, T.R.8
-
34
-
-
0033028596
-
Systematic determination of genetic network architecture
-
Tavazoie, S., Hughes, J. D., Campbell, M. J., Cho, R. J. and Church, G. M. 1999. Systematic determination of genetic network architecture. Nat. Genet., 22: 281-285.
-
(1999)
Nat. Genet
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.D.2
Campbell, M.J.3
Cho, R.J.4
Church, G.M.5
-
36
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
(Article e15)
-
Yang, Y. H., Dudoit, S., Luu, P., Lin, M. D., Peng, V., Ngai, J. and Speed, T. P. 2002. Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res., 30(4) (Article e15)
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.4
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, M.D.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
37
-
-
0034782618
-
Model-based clustering and data transformations for gene expression data
-
Yeung, K. Y., Fraley, C., Murua, A., Raftery, A. E. and Ruzzo, W. L. 2001. Model-based clustering and data transformations for gene expression data. Bioinformatics, 17: 977-987.
-
(2001)
Bioinformatics
, vol.17
, pp. 977-987
-
-
Yeung, K.Y.1
Fraley, C.2
Murua, A.3
Raftery, A.E.4
Ruzzo, W.L.5
|