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Volumn 54, Issue SUPPL. 2, 2012, Pages

Use and evaluation of molecular diagnostics for pneumonia etiology studies

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHLAMYDIAL PNEUMONIA; CLINICAL EVALUATION; DIAGNOSTIC PROCEDURE; DIAGNOSTIC TEST ACCURACY STUDY; HUMAN; MOLECULAR DIAGNOSIS; MULTIPLEX POLYMERASE CHAIN REACTION; MYCOPLASMA PNEUMONIA; NONHUMAN; NUCLEIC ACID ANALYSIS; PNEUMONIA; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION;

EID: 84858131007     PISSN: 10584838     EISSN: 15376591     Source Type: Journal    
DOI: 10.1093/cid/cir1060     Document Type: Article
Times cited : (25)

References (54)
  • 1
    • 84858140980 scopus 로고    scopus 로고
    • PERCH: A 21st century childhood pneumonia etiology study
    • Levine OS. PERCH: a 21st century childhood pneumonia etiology study. Clin Infect Dis 2012; 54(Suppl 2):S87-8.
    • (2012) Clin Infect Dis , vol.54 , Issue.SUPPL. 2
    • Levine, O.S.1
  • 3
    • 84858118703 scopus 로고    scopus 로고
    • Specimen collection for the diagnosis of pediatric pneumonia
    • Hammitt LL, Murdoch DR, Scott JA, et al. Specimen collection for the diagnosis of pediatric pneumonia. Clin Infect Dis 2012; 54(Suppl 2): S132-9.
    • (2012) Clin Infect Dis , vol.54 , Issue.SUPPL. 2
    • Hammitt, L.L.1    Murdoch, D.R.2    Scott, J.A.3
  • 5
    • 37349104272 scopus 로고    scopus 로고
    • Nucleic acid amplification tests for detection of respiratory viruses
    • DOI 10.1016/S1386-6532(07)70005-7, PII S1386653207700057
    • Fox JD. Nucleic acid amplification tests for detection of respiratory viruses. J Clin Virol 2007; 40(suppl 1):S15-23. (Pubitemid 350298969)
    • (2007) Journal of Clinical Virology , vol.40 , Issue.SUPPL. 1
    • Fox, J.D.1
  • 6
    • 30744457098 scopus 로고    scopus 로고
    • In-house nucleic acid amplification assays in research: How much quality control is needed before one can rely upon the results?
    • DOI 10.1128/JCM.43.12.5835-5841.2005
    • Apfalter P, Reischl U, Hammerschlag MR. In-house nucleic acid amplification assays in research: how much quality control is needed before one can rely upon the results? J Clin Microbiol 2005; 43:5835-41. (Pubitemid 43100626)
    • (2005) Journal of Clinical Microbiology , vol.43 , Issue.12 , pp. 5835-5841
    • Apfalter, P.1    Reischl, U.2    Hammerschlag, M.R.3
  • 7
    • 77953235450 scopus 로고    scopus 로고
    • Molecular diagnosis of respiratory viruses
    • Beck ET, Henrickson KJ. Molecular diagnosis of respiratory viruses. Future Microbiol 2010; 5:901-16.
    • (2010) Future Microbiol , vol.5 , pp. 901-916
    • Beck, E.T.1    Henrickson, K.J.2
  • 8
    • 19944429046 scopus 로고    scopus 로고
    • A touchdown nucleic acid amplification protocol as an alternative to culture backup for immunofluorescence in the routine diagnosis of acute viral respiratory tract infections
    • Coyle PV, Ong GM, O'Neill HJ, et al. A touchdown nucleic acid amplification protocol as an alternative to culture backup for immunofluorescence in the routine diagnosis of acute viral respiratory tract infections. BMC Microbiol 2004; 4:41.
    • (2004) BMC Microbiol , vol.4 , pp. 41
    • Coyle, P.V.1    Ong, G.M.2    O'Neill, H.J.3
  • 9
    • 38149013755 scopus 로고    scopus 로고
    • Evidence from multiplex molecular assays for complex multipathogen interactions in acute respiratory infections
    • Brunstein JD, Cline CL, McKinney S, Thomas E. Evidence from multiplex molecular assays for complex multipathogen interactions in acute respiratory infections. J Clin Microbiol 2008; 46:97-102.
    • (2008) J Clin Microbiol , vol.46 , pp. 97-102
    • Brunstein, J.D.1    Cline, C.L.2    McKinney, S.3    Thomas, E.4
  • 11
    • 59749096351 scopus 로고    scopus 로고
    • Rapid detection and identification of 12 respiratory viruses using a dual priming oligonucleotide system-based multiplex PCR assay
    • Kim SR, Ki CS, Lee NY. Rapid detection and identification of 12 respiratory viruses using a dual priming oligonucleotide system-based multiplex PCR assay. J Virol Methods 2009; 156:111-16.
    • (2009) J Virol Methods , vol.156 , pp. 111-116
    • Kim, S.R.1    Ki, C.S.2    Lee, N.Y.3
  • 12
  • 16
    • 65349100762 scopus 로고    scopus 로고
    • Loop-mediated isothermal amplification (LAMP): A rapid, accurate, and cost-effective diagnostic method for infectious diseases
    • Mori Y, Notomi T. Loop-mediated isothermal amplification (LAMP): a rapid, accurate, and cost-effective diagnostic method for infectious diseases. J Infect Chemother 2009; 15:62-9.
    • (2009) J Infect Chemother , vol.15 , pp. 62-69
    • Mori, Y.1    Notomi, T.2
  • 17
    • 67650079042 scopus 로고    scopus 로고
    • Rapid real-time nucleic acid sequence-based amplification-molecular beacon platform to detect fungal and bacterial bloodstream infections
    • Zhao Y, Park S, Kreiswirth BN, et al. Rapid real-time nucleic acid sequence-based amplification-molecular beacon platform to detect fungal and bacterial bloodstream infections. J Clin Microbiol 2009; 47:2067-78.
    • (2009) J Clin Microbiol , vol.47 , pp. 2067-2078
    • Zhao, Y.1    Park, S.2    Kreiswirth, B.N.3
  • 18
    • 77955096901 scopus 로고    scopus 로고
    • Development of multiplex nucleic acid sequence-based amplification for detection of human respiratory tract viruses
    • Lau LT, Feng XY, Lam TY, Hui HK, Yu AC. Development of multiplex nucleic acid sequence-based amplification for detection of human respiratory tract viruses. J Virol Methods 2010; 168:251-4.
    • (2010) J Virol Methods , vol.168 , pp. 251-254
    • Lau, L.T.1    Feng, X.Y.2    Lam, T.Y.3    Hui, H.K.4    Yu, A.C.5
  • 19
    • 79952140072 scopus 로고    scopus 로고
    • Predicting viruses accurately by a multiplex microfluidic loop-mediated isothermal amplification chip
    • Fang X, ChenH, Yu S, Jiang X, Kong J. Predicting viruses accurately by a multiplex microfluidic loop-mediated isothermal amplification chip. Anal Chem 2011; 83:690-5.
    • (2011) Anal Chem , vol.83 , pp. 690-695
    • Fang, X.1    Chen, H.2    Yu, S.3    Jiang, X.4    Kong, J.5
  • 20
    • 0029890736 scopus 로고    scopus 로고
    • Rapid diagnosis of human parainfluenza virus type 1 infection by quantitative reverse transcription-PCR-enzyme hybridization assay
    • Fan J, Henrickson KJ. Rapid diagnosis of human parainfluenza virus type 1 infection by quantitative reverse transcription-PCR-enzyme hybridization assay. J Clin Microbiol 1996; 34:1914-17. (Pubitemid 26239222)
    • (1996) Journal of Clinical Microbiology , vol.34 , Issue.8 , pp. 1914-1917
    • Fan, J.1    Henrickson, K.J.2
  • 21
    • 0035024955 scopus 로고    scopus 로고
    • Evaluation of the hexaplex assay for detection of respiratory viruses in children
    • Kehl SC, Henrickson KJ, Hua W, Fan J. Evaluation of the hexaplex assay for detection of respiratory viruses in children. J Clin Microbiol 2001; 39:1696-701.
    • (2001) J Clin Microbiol , vol.39 , pp. 1696-1670
    • Kehl, S.C.1    Henrickson, K.J.2    Hua, W.3    Fan, J.4
  • 22
    • 53649109657 scopus 로고    scopus 로고
    • Detection of 11 common viral and bacterial pathogens causing community-acquired pneumonia or sepsis in asymptomatic patients by using a multiplex reverse transcription-PCR assay with manual (enzyme hybridization) or automated (electronic microarray) detection
    • Kumar S, Wang L, Fan J, et al. Detection of 11 common viral and bacterial pathogens causing community-acquired pneumonia or sepsis in asymptomatic patients by using a multiplex reverse transcription-PCR assay with manual (enzyme hybridization) or automated (electronic microarray) detection. J Clin Microbiol 2008; 46:3063-72.
    • (2008) J Clin Microbiol , vol.46 , pp. 3063-3072
    • Kumar, S.1    Wang, L.2    Fan, J.3
  • 23
    • 2442510013 scopus 로고    scopus 로고
    • Use of the DNA Flow-Thru Chip, a Three-Dimensional Biochip, for Typing and Subtyping of Influenza Viruses
    • DOI 10.1128/JCM.42.5.2173-2185.2004
    • Kessler N, Ferraris O, Palmer K, Marsh W, Steel A. Use of the DNA flow-thru chip, a three-dimensional biochip, for typing and subtyping of influenza viruses. J Clin Microbiol 2004; 42:2173-85. (Pubitemid 38637839)
    • (2004) Journal of Clinical Microbiology , vol.42 , Issue.5 , pp. 2173-2185
    • Kessler, N.1    Ferraris, O.2    Palmer, K.3    Marsh, W.4    Steel, A.5
  • 24
    • 17844361894 scopus 로고    scopus 로고
    • Oligonucleotide array for simultaneous detection of respiratory viruses using a reverse-line blot hybridization assay
    • DOI 10.1002/jmv.20350
    • Coiras MT, Lopez-Huertas MR, Lopez-Campos G, Aguilar JC, Perez-Brena P. Oligonucleotide array for simultaneous detection of respiratory viruses using a reverse-line blot hybridization assay. J Med Virol 2005; 76:256-64. (Pubitemid 40594012)
    • (2005) Journal of Medical Virology , vol.76 , Issue.2 , pp. 256-264
    • Coiras, M.T.1    Lopez-Huertas, M.R.2    Lopez-Campos, G.3    Aguilar, J.C.4    Perez-Brena, P.5
  • 25
    • 33645471454 scopus 로고    scopus 로고
    • Identifying influenza viruses with resequencing microarrays
    • Wang Z, Daum LT, Vora GJ, et al. Identifying influenza viruses with resequencing microarrays. Emerg Infect Dis 2006; 12:638-46.
    • (2006) Emerg Infect Dis , vol.12 , pp. 638-646
    • Wang, Z.1    Daum, L.T.2    Vora, G.J.3
  • 29
    • 33847047774 scopus 로고    scopus 로고
    • Using a resequencing microarray as a multiple respiratory pathogen detection assay
    • Lin B, Blaney KM, Malanoski AP, et al. Using a resequencing microarray as a multiple respiratory pathogen detection assay. J Clin Microbiol 2007; 45:443-52.
    • (2007) J Clin Microbiol , vol.45 , pp. 443-452
    • Lin, B.1    Blaney, K.M.2    Malanoski, A.P.3
  • 30
    • 47649120745 scopus 로고    scopus 로고
    • Utility of DNA microarrays for detection of viruses in acute respiratory tract infections in children
    • Chiu CY, Urisman A, Greenhow TL, et al. Utility of DNA microarrays for detection of viruses in acute respiratory tract infections in children. J Pediatr 2008; 153:76-83.
    • (2008) J Pediatr , vol.153 , pp. 76-83
    • Chiu, C.Y.1    Urisman, A.2    Greenhow, T.L.3
  • 31
    • 62749205855 scopus 로고    scopus 로고
    • Comparison of automated microarray detection with real-time PCR assays for detection of respiratory viruses in specimens obtained from children
    • Raymond F, Carbonneau J, Boucher N, et al. Comparison of automated microarray detection with real-time PCR assays for detection of respiratory viruses in specimens obtained from children. J Clin Microbiol 2009; 47:743-50.
    • (2009) J Clin Microbiol , vol.47 , pp. 743-750
    • Raymond, F.1    Carbonneau, J.2    Boucher, N.3
  • 32
    • 34548703323 scopus 로고    scopus 로고
    • Development of a respiratory virus panel test for detection of twenty human respiratory viruses by use of multiplex PCR and a fluid microbead-based assay
    • DOI 10.1128/JCM.02436-06
    • Mahony J, Chong S, Merante F, et al. Development of a respiratory virus panel test for detection of twenty human respiratory viruses by use of multiplex PCR and a fluid microbead-based assay. J Clin Microbiol 2007; 45:2965-70. (Pubitemid 47417341)
    • (2007) Journal of Clinical Microbiology , vol.45 , Issue.9 , pp. 2965-2970
    • Mahony, J.1    Chong, S.2    Merante, F.3    Yaghoubian, S.4    Sinha, T.5    Lisle, C.6    Janeczko, R.7
  • 35
    • 55649110706 scopus 로고    scopus 로고
    • Using multiplex real time PCR in order to streamline a routine diagnostic service
    • Gunson RN, Bennett S, Maclean A, Carman WF. Using multiplex real time PCR in order to streamline a routine diagnostic service. J Clin Virol 2008; 43:372-5.
    • (2008) J Clin Virol , vol.43 , pp. 372-375
    • Gunson, R.N.1    Bennett, S.2    MacLean, A.3    Carman, W.F.4
  • 36
    • 79957487836 scopus 로고    scopus 로고
    • Application of TaqMan low-density arrays for simultaneous detection of multiple respiratory pathogens
    • Kodani M, Yang G, Conklin LM, et al. Application of TaqMan low-density arrays for simultaneous detection of multiple respiratory pathogens. J Clin Microbiol 2011; 49:2175-82.
    • (2011) J Clin Microbiol , vol.49 , pp. 2175-2182
    • Kodani, M.1    Yang, G.2    Conklin, L.M.3
  • 37
    • 33746366176 scopus 로고    scopus 로고
    • Comparison of real-time PCR assays with fluorescent-antibody assays for diagnosis of respiratory virus infections in children
    • DOI 10.1128/JCM.00216-06
    • Kuypers J, Wright N, Ferrenberg J, et al. Comparison of real-time PCR assays with fluorescent-antibody assays for diagnosis of respiratory virus infections in children. J Clin Microbiol 2006; 44:2382-8. (Pubitemid 44109661)
    • (2006) Journal of Clinical Microbiology , vol.44 , Issue.7 , pp. 2382-2388
    • Kuypers, J.1    Wright, N.2    Ferrenberg, J.3    Huang, M.-L.4    Cent, A.5    Corey, L.6    Morrow, R.7
  • 38
    • 77952752375 scopus 로고    scopus 로고
    • Viral etiology of severe pneumonia among Kenyan infants and children
    • Berkley JA, Munywoki P, Ngama M, et al. Viral etiology of severe pneumonia among Kenyan infants and children. JAMA 2010; 303: 2051-7.
    • (2010) JAMA , vol.303 , pp. 2051-2057
    • Berkley, J.A.1    Munywoki, P.2    Ngama, M.3
  • 39
    • 76449098508 scopus 로고    scopus 로고
    • Prospective evaluation of a novel multiplex real-time PCR assay for detection of fifteen respiratory pathogens-duration of symptoms significantly affects detection rate
    • Brittain-Long R, Westin J, Olofsson S, Lindh M, Andersson LM. Prospective evaluation of a novel multiplex real-time PCR assay for detection of fifteen respiratory pathogens-duration of symptoms significantly affects detection rate. J Clin Virol 2010; 47:263-7.
    • (2010) J Clin Virol , vol.47 , pp. 263-267
    • Brittain-Long, R.1    Westin, J.2    Olofsson, S.3    Lindh, M.4    Andersson, L.M.5
  • 40
    • 54249126863 scopus 로고    scopus 로고
    • Detection of respiratory viruses by molecular methods
    • Mahony JB. Detection of respiratory viruses by molecular methods. Clin Microbiol Rev 2008; 21:716-47.
    • (2008) Clin Microbiol Rev , vol.21 , pp. 716-747
    • Mahony, J.B.1
  • 41
    • 70350515691 scopus 로고    scopus 로고
    • Utilization of nucleic acid amplification assays for the detection of respiratory viruses
    • Kehl SC, Kumar S. Utilization of nucleic acid amplification assays for the detection of respiratory viruses. Clin Lab Med 2009; 29:661-71.
    • (2009) Clin Lab Med , vol.29 , pp. 661-671
    • Kehl, S.C.1    Kumar, S.2
  • 42
    • 78349238919 scopus 로고    scopus 로고
    • Acute respiratory infection due to Mycoplasma pneumoniae: Current status of diagnostic methods
    • Loens K, Goossens H, Ieven M. Acute respiratory infection due to Mycoplasma pneumoniae: current status of diagnostic methods. Eur J Clin Microbiol Infect Dis 2010; 29:1055-69.
    • (2010) Eur J Clin Microbiol Infect Dis , vol.29 , pp. 1055-1069
    • Loens, K.1    Goossens, H.2    Ieven, M.3
  • 43
    • 33846909792 scopus 로고    scopus 로고
    • Acute respiratory infection due to Chlamydia pneumoniae: Current status of diagnostic methods
    • DOI 10.1086/511076
    • Kumar S, Hammerschlag MR. Acute respiratory infection due to Chlamydia pneumoniae: current status of diagnostic methods. Clin Infect Dis 2007; 44:568-76. (Pubitemid 46233262)
    • (2007) Clinical Infectious Diseases , vol.44 , Issue.4 , pp. 568-576
    • Kumar, S.1    Hammerschlag, M.R.2
  • 44
    • 0037235164 scopus 로고    scopus 로고
    • Diagnosis of Legionella infection
    • DOI 10.1086/345529
    • Murdoch DR. Diagnosis of Legionella infection. Clin Infect Dis 2003; 36:64-9. (Pubitemid 36099099)
    • (2003) Clinical Infectious Diseases , vol.36 , Issue.1 , pp. 64-69
    • Murdoch, D.R.1
  • 46
    • 0031024931 scopus 로고    scopus 로고
    • 'Sensitivity' and 'specificity' reconsidered: The meaning of these terms in analytical and diagnostic settings
    • Saah AJ, Hoover DR. "Sensitivity" and "specificity" reconsidered: the meaning of these terms in analytical and diagnostic settings. Ann Intern Med 1997; 126:91-4. (Pubitemid 27021232)
    • (1997) Annals of Internal Medicine , vol.126 , Issue.1 , pp. 91-94
    • Saah, A.J.1    Hoover, D.R.2
  • 48
    • 0037422764 scopus 로고    scopus 로고
    • The STARD statement for reporting studies of diagnostic accuracy: Explanation and elaboration
    • Bossuyt PM, Reitsma JB, Bruns DE, et al. The STARD statement for reporting studies of diagnostic accuracy: explanation and elaboration. Ann Intern Med 2003; 138:W1-12.
    • (2003) Ann Intern Med , vol.138
    • Bossuyt, P.M.1    Reitsma, J.B.2    Bruns, D.E.3
  • 49
    • 2942700307 scopus 로고    scopus 로고
    • The development of QUADAS: A tool for the quality assessment of studies of diagnostic accuracy included in systematic reviews
    • Whiting P, Rutjes AW, Reitsma JB, Bossuyt PM, Kleijnen J. The development of QUADAS: a tool for the quality assessment of studies of diagnostic accuracy included in systematic reviews. BMC Med Res Methodol 2003; 3:25.
    • (2003) BMC Med Res Methodol , vol.3 , pp. 25
    • Whiting, P.1    Rutjes, A.W.2    Reitsma, J.B.3    Bossuyt, P.M.4    Kleijnen, J.5
  • 50
    • 24144432767 scopus 로고    scopus 로고
    • Evaluation of nucleic acid amplification tests in the absence of a perfect gold-standard test: A review of the statistical and epidemiologic issues
    • DOI 10.1097/01.ede.0000173042.07579.17
    • Hadgu A, Dendukuri N, Hilden J. Evaluation of nucleic acid amplification tests in the absence of a perfect gold-standard test: a review of the statistical and epidemiologic issues. Epidemiology 2005; 16:604-12. (Pubitemid 41233613)
    • (2005) Epidemiology , vol.16 , Issue.5 , pp. 604-612
    • Hadgu, A.1    Dendukuri, N.2    Hilden, J.3
  • 51
    • 58849116870 scopus 로고    scopus 로고
    • Optimal sampling sites and methods for detection of pathogens possibly causing community-acquired lower respiratory tract infections
    • Loens K, Van Heirstraeten L, Malhotra-Kumar S, Goossens H, Ieven M. Optimal sampling sites and methods for detection of pathogens possibly causing community-acquired lower respiratory tract infections. J Clin Microbiol 2009; 47:21-31.
    • (2009) J Clin Microbiol , vol.47 , pp. 21-31
    • Loens, K.1    Van Heirstraeten, L.2    Malhotra-Kumar, S.3    Goossens, H.4    Ieven, M.5
  • 52
    • 78650535644 scopus 로고    scopus 로고
    • Comparison of commercial systems for extraction of nucleic acids from DNA/RNA respiratory pathogens
    • Yang G, Erdman DE, Kodani M, Kools J, Bowen MD, Fields BS. Comparison of commercial systems for extraction of nucleic acids from DNA/RNA respiratory pathogens. J Virol Methods 2011; 171: 195-9.
    • (2011) J Virol Methods , vol.171 , pp. 195-199
    • Yang, G.1    Erdman, D.E.2    Kodani, M.3    Kools, J.4    Bowen, M.D.5    Fields, B.S.6
  • 54
    • 78650959046 scopus 로고    scopus 로고
    • Evaluation of commercial ResPlex II v2.0, MultiCode-PLx, and xTAG respiratory viral panels for the diagnosis of respiratory viral infections in adults
    • Balada-Llasat JM, LaRue H, Kelly C, Rigali L, Pancholi P. Evaluation of commercial ResPlex II v2.0, MultiCode-PLx, and xTAG respiratory viral panels for the diagnosis of respiratory viral infections in adults. J Clin Virol 2011; 50:42-5.
    • (2011) J Clin Virol , vol.50 , pp. 42-45
    • Balada-Llasat, J.M.1    Larue, H.2    Kelly, C.3    Rigali, L.4    Pancholi, P.5


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