메뉴 건너뛰기




Volumn 63, Issue 2, 2012, Pages 244-254

Understanding the colonization history of the Galápagos flycatcher (Myiarchus magnirostris)

Author keywords

Gal pagos; Island colonization; Myiarchus magnirostris; Phylogeny; Population genetics; Speciation

Indexed keywords

CYTOCHROME B; MITOCHONDRIAL DNA; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE;

EID: 84858072212     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2011.10.023     Document Type: Article
Times cited : (8)

References (54)
  • 1
    • 33646834752 scopus 로고    scopus 로고
    • The origin and diversification of Galápagos mockingbirds
    • Arbogast B.S., Drovetski S.V., Curry R.L., et al. The origin and diversification of Galápagos mockingbirds. Evolution 2006, 60:370-382.
    • (2006) Evolution , vol.60 , pp. 370-382
    • Arbogast, B.S.1    Drovetski, S.V.2    Curry, R.L.3
  • 2
    • 33645323555 scopus 로고    scopus 로고
    • Multiple gene evidence for expansion of extant penguins out of Antarctica due to global cooling
    • Baker A.J., Pereira S.L., Haddrath O.P., Edge K. Multiple gene evidence for expansion of extant penguins out of Antarctica due to global cooling. Proc. R. Soc. Lond., Ser. B: Biol. Sci. 2006, 273:11-17.
    • (2006) Proc. R. Soc. Lond., Ser. B: Biol. Sci. , vol.273 , pp. 11-17
    • Baker, A.J.1    Pereira, S.L.2    Haddrath, O.P.3    Edge, K.4
  • 3
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining networks for inferring intraspecific phylogenies
    • Bandelt H.J., Forster P., Röhl A. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 1999, 16:37-48. .
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 37-48
    • Bandelt, H.J.1    Forster, P.2    Röhl, A.3
  • 5
    • 28744441579 scopus 로고    scopus 로고
    • Population genetics of the Galápagos hawk (Buteo galapagoensis): genetic monomorphism within isolated populations
    • Bollmer J.L., Whiteman N.K., Donaghy Cannon M., Bednarz J.C., de Vries Tj., Parker P.G. Population genetics of the Galápagos hawk (Buteo galapagoensis): genetic monomorphism within isolated populations. Auk 2005, 122:1210-1224.
    • (2005) Auk , vol.122 , pp. 1210-1224
    • Bollmer, J.L.1    Whiteman, N.K.2    Donaghy Cannon, M.3    Bednarz, J.C.4    de Vries, T.5    Parker, P.G.6
  • 6
    • 33645013089 scopus 로고    scopus 로고
    • Phylogeography of the Galápagos hawk (Buteo galapagoensis): a recent arrival tothe Galápagos Islands
    • Bollmer J.L., Kimball R.T., Whiteman N.K., Sarasola J.H., Parker P.G. Phylogeography of the Galápagos hawk (Buteo galapagoensis): a recent arrival tothe Galápagos Islands. Mol. Phylogen. Evol. 2006, 39:237-247.
    • (2006) Mol. Phylogen. Evol. , vol.39 , pp. 237-247
    • Bollmer, J.L.1    Kimball, R.T.2    Whiteman, N.K.3    Sarasola, J.H.4    Parker, P.G.5
  • 7
    • 33947149502 scopus 로고    scopus 로고
    • Evolution into and out of the Andes: a Bayesian analysis of historical diversification in Thamnophilus antshrikes
    • Brumfield R.T., Edwards S.V. Evolution into and out of the Andes: a Bayesian analysis of historical diversification in Thamnophilus antshrikes. Evolution 2007, 61:346-367.
    • (2007) Evolution , vol.61 , pp. 346-367
    • Brumfield, R.T.1    Edwards, S.V.2
  • 8
    • 0035989034 scopus 로고    scopus 로고
    • Phylogenetic relationships and morphological diversity in Darwin's finches and their relatives
    • Burns K.J., Hackett S.J., Klein N.K. Phylogenetic relationships and morphological diversity in Darwin's finches and their relatives. Evolution 2002, 56:1240-1252.
    • (2002) Evolution , vol.56 , pp. 1240-1252
    • Burns, K.J.1    Hackett, S.J.2    Klein, N.K.3
  • 10
    • 84883959020 scopus 로고    scopus 로고
    • Evolutionary changes following island colonization in birds: empirical insights into the roles of microevolutionary processes
    • Princeton University Press, Princeton, J. Losos, R.E. Ricklefs (Eds.)
    • Clegg S.M. Evolutionary changes following island colonization in birds: empirical insights into the roles of microevolutionary processes. The Theory of Island Biogeography Revisited 2010, 293-325. Princeton University Press, Princeton. J. Losos, R.E. Ricklefs (Eds.).
    • (2010) The Theory of Island Biogeography Revisited , pp. 293-325
    • Clegg, S.M.1
  • 11
    • 0002147868 scopus 로고
    • Ages of the Galápagos Islands
    • Pacific division, AAAS, San Francisco, California, R.I. Bowman, M. Berson, A.E. Leviton (Eds.)
    • Cox A. Ages of the Galápagos Islands. Patterns of evolution in Galápagos Organisms 1983, 11-23. Pacific division, AAAS, San Francisco, California. R.I. Bowman, M. Berson, A.E. Leviton (Eds.).
    • (1983) Patterns of evolution in Galápagos Organisms , pp. 11-23
    • Cox, A.1
  • 13
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 14
    • 0025009207 scopus 로고
    • Phylogenetically informative length polymorphism and sequence variability in mitochondrial DNA of Australian songbirds (Pomatostomus)
    • Edwards S.V., Wilson A.C. Phylogenetically informative length polymorphism and sequence variability in mitochondrial DNA of Australian songbirds (Pomatostomus). Genetics 1990, 125:695-711.
    • (1990) Genetics , vol.125 , pp. 695-711
    • Edwards, S.V.1    Wilson, A.C.2
  • 15
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data
    • Excoffier L., Smouse P.E., Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992, 131:479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 16
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin ver. 3.0: an integrated software package for population genetics data analysis
    • Excoffier L., Laval G., Schneider S. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol. Bioinf. Online 2005, 1:47-50.
    • (2005) Evol. Bioinf. Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 17
    • 25144433661 scopus 로고    scopus 로고
    • Family Tyrannidae. In: Del Hoyo, J., Elliot, A., Christie, D. (Eds.), Handbook of the Birds of the World: Cotingas to Pipits and Wagtails v. 9. Lynx Edicions, Barcelona
    • Fitzpatrick, J.M., 2004. Family Tyrannidae. In: Del Hoyo, J., Elliot, A., Christie, D. (Eds.), Handbook of the Birds of the World: Cotingas to Pipits and Wagtails v. 9. Lynx Edicions, Barcelona, pp. 170-462.
    • (2004) , pp. 170-462
    • Fitzpatrick, J.M.1
  • 18
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
    • Fu Y.-X. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 1997, 147:915-925.
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.-X.1
  • 19
    • 0001876333 scopus 로고    scopus 로고
    • On the emergence and submergence of the Galápagos Islands
    • Geist D.J. On the emergence and submergence of the Galápagos Islands. Noticias de Galápagos 1996, 56:5-9.
    • (1996) Noticias de Galápagos , vol.56 , pp. 5-9
    • Geist, D.J.1
  • 20
    • 0028161875 scopus 로고
    • Population variation and hybridization: comparison of finches from two archipelagos
    • Grant P.R. Population variation and hybridization: comparison of finches from two archipelagos. Evol. Ecol. 1994, 8:598-617.
    • (1994) Evol. Ecol. , vol.8 , pp. 598-617
    • Grant, P.R.1
  • 21
    • 0035050957 scopus 로고    scopus 로고
    • Reconstructing the evolution of birds on islands: 100 years of research
    • Grant P.R. Reconstructing the evolution of birds on islands: 100 years of research. Oikos 2001, 92:385-403.
    • (2001) Oikos , vol.92 , pp. 385-403
    • Grant, P.R.1
  • 24
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M., Kishino H., Yano T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 1985, 22:160-174.
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 26
    • 1642465385 scopus 로고    scopus 로고
    • Towards a phylogenetic framework for the evolution of shakes, rattles, and rolls in Myiarchus tyrant-flycatchers (Aves: Passeriformes: Tyrannidae)
    • Joseph L., Wilke T., Bermingham E., Alpers D., Ricklefs R.E. Towards a phylogenetic framework for the evolution of shakes, rattles, and rolls in Myiarchus tyrant-flycatchers (Aves: Passeriformes: Tyrannidae). Mol. Phylogen. Evol. 2004, 31:139-152.
    • (2004) Mol. Phylogen. Evol. , vol.31 , pp. 139-152
    • Joseph, L.1    Wilke, T.2    Bermingham, E.3    Alpers, D.4    Ricklefs, R.E.5
  • 27
    • 67949109465 scopus 로고    scopus 로고
    • The phylogenetic position of the Galápagos Cormorant
    • Kennedy M., Valle C.A., Spencer H.G. The phylogenetic position of the Galápagos Cormorant. Mol. Phylogen. Evol. 2009, 53:94-98.
    • (2009) Mol. Phylogen. Evol. , vol.53 , pp. 94-98
    • Kennedy, M.1    Valle, C.A.2    Spencer, H.G.3
  • 29
    • 0005923916 scopus 로고
    • The Middle American populations of the crested flycatcher Myiarchus tyrannulus
    • Lanyon W.E. The Middle American populations of the crested flycatcher Myiarchus tyrannulus. Condor 1960, 62:341-350.
    • (1960) Condor , vol.62 , pp. 341-350
    • Lanyon, W.E.1
  • 30
    • 33748042145 scopus 로고
    • Specific limits and distribution of ash-throated and nutting flycatchers
    • Lanyon W.E. Specific limits and distribution of ash-throated and nutting flycatchers. Condor 1961, 63:421-449.
    • (1961) Condor , vol.63 , pp. 421-449
    • Lanyon, W.E.1
  • 31
    • 1642439914 scopus 로고
    • Revision and probable evolution of Myiarchus flycatchers of the West Indies
    • Lanyon W.E. Revision and probable evolution of Myiarchus flycatchers of the West Indies. Bull. Am. Mus. Nat. Hist. N. Y. 1967, 136:329-370.
    • (1967) Bull. Am. Mus. Nat. Hist. N. Y. , vol.136 , pp. 329-370
    • Lanyon, W.E.1
  • 32
    • 0001655357 scopus 로고
    • Revision of the Myiarchus flycatchers of South America
    • Lanyon W.E. Revision of the Myiarchus flycatchers of South America. Bull. Am. Mus. Nat. Hist. N. Y. 1978, 161:429-627.
    • (1978) Bull. Am. Mus. Nat. Hist. N. Y. , vol.161 , pp. 429-627
    • Lanyon, W.E.1
  • 33
    • 65649117685 scopus 로고    scopus 로고
    • DNAsp v. 5: a software for comprehensive analysis of DNA polymorphism data
    • Librado P., Rozas J. DNAsp v. 5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 34
    • 0023751078 scopus 로고
    • Isolation and molecular characterization of a highly polymorphic centromeric tandem repeat in the family Falconidae
    • Longmire J.L., et al. Isolation and molecular characterization of a highly polymorphic centromeric tandem repeat in the family Falconidae. Genomics 1988, 2:14-24.
    • (1988) Genomics , vol.2 , pp. 14-24
    • Longmire, J.L.1
  • 35
    • 3042649996 scopus 로고    scopus 로고
    • Mesquite: a modular system for evolutionary analysis
    • Version 2.73.
    • Maddison, W.P., Maddison, D.R., 2010. Mesquite: a modular system for evolutionary analysis. Version 2.73. http://mesquiteproject.org.
    • (2010)
    • Maddison, W.P.1    Maddison, D.R.2
  • 37
    • 51849127437 scopus 로고    scopus 로고
    • Colonization and diversification of Galápagos terrestrial fauna: a phylogenetic and biogeographical synthesis
    • Parent C.E., Caccone A., Petren K. Colonization and diversification of Galápagos terrestrial fauna: a phylogenetic and biogeographical synthesis. Phil. Trans. R. Soc. B 2008, 363:3347-3361.
    • (2008) Phil. Trans. R. Soc. B , vol.363 , pp. 3347-3361
    • Parent, C.E.1    Caccone, A.2    Petren, K.3
  • 38
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: phylogenetic model averaging
    • Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 39
    • 26944486783 scopus 로고    scopus 로고
    • Selecting models of evolution. In: Lemey, P., Salemi, M., Vandamme, A.-M. (Eds.), The Phylogenetic Handbook: A Practical Approach to Phylogenetic Analysis and Hypothesis Testing. Cambridge University Press, Cambridge
    • Posada, D., 2009. Selecting models of evolution. In: Lemey, P., Salemi, M., Vandamme, A.-M. (Eds.), The Phylogenetic Handbook: A Practical Approach to Phylogenetic Analysis and Hypothesis Testing. Cambridge University Press, Cambridge, pp. 345-361.
    • (2009) , pp. 345-361
    • Posada, D.1
  • 40
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 42
    • 0035711291 scopus 로고    scopus 로고
    • Evolution of Mhc class II B genes in Darwin's finches and their closest relatives: birth of a new gene
    • Sato A., Mayer W.D., Tichy H., Grant P.R., Grant B.R., Klein J. Evolution of Mhc class II B genes in Darwin's finches and their closest relatives: birth of a new gene. Immunogenetics 2001, 53:792-801.
    • (2001) Immunogenetics , vol.53 , pp. 792-801
    • Sato, A.1    Mayer, W.D.2    Tichy, H.3    Grant, P.R.4    Grant, B.R.5    Klein, J.6
  • 44
    • 84858072400 scopus 로고    scopus 로고
    • Avian mtDNA Primers.
    • Sorenson, M.D., 2003. Avian mtDNA Primers. http://people.bu.edu/msoren/Bird.mt.Primers.pdf.
    • (2003)
    • Sorenson, M.D.1
  • 45
    • 0031884718 scopus 로고    scopus 로고
    • Numts: a challenge for avian systematics and population biology
    • Sorenson M.D., Quinn T.W. Numts: a challenge for avian systematics and population biology. Auk 1998, 115:214-221.
    • (1998) Auk , vol.115 , pp. 214-221
    • Sorenson, M.D.1    Quinn, T.W.2
  • 46
    • 26844521242 scopus 로고    scopus 로고
    • RAxML-OMP: An efficient program for phylogenetic inference on SMPs
    • In: Proceedings of 8th International Conference on Parallel Computing Technologies (PaCT2005), Lecture Notes in Computer Science. Springer Verlag
    • Stamatakis, A., Ott, M., Ludwig, T., 2005. RAxML-OMP: An efficient program for phylogenetic inference on SMPs. In: Proceedings of 8th International Conference on Parallel Computing Technologies (PaCT2005), Lecture Notes in Computer Science, vol. 3506. Springer Verlag, pp. 288-302.
    • (2005) , vol.3506 , pp. 288-302
    • Stamatakis, A.1    Ott, M.2    Ludwig, T.3
  • 47
    • 0004248459 scopus 로고    scopus 로고
    • PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods)
    • Version 4. Sinauer Associates Inc., Sunderland, Massachusetts.
    • Swofford, D.L., 1998. PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates Inc., Sunderland, Massachusetts.
    • (1998)
    • Swofford, D.L.1
  • 48
    • 0026711010 scopus 로고
    • Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+ C-content biases
    • Tamura K. Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+ C-content biases. Mol. Biol. Evol. 1992, 9:678-687.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 678-687
    • Tamura, K.1
  • 49
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 50
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol 2011, 10.1093/molbev/msr121.
    • (2011) Mol. Biol. Evol
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 51
    • 67650719104 scopus 로고    scopus 로고
    • Phylogeny and phylogenetic classification of the tyrant flycatchers, cotingas, manakins, and their allies (Aves: Tyrannides)
    • Tello J.G., Moyle R.G., Marchese D.J., Cracraft J. Phylogeny and phylogenetic classification of the tyrant flycatchers, cotingas, manakins, and their allies (Aves: Tyrannides). Cladistics 2009, 25:1-39.
    • (2009) Cladistics , vol.25 , pp. 1-39
    • Tello, J.G.1    Moyle, R.G.2    Marchese, D.J.3    Cracraft, J.4
  • 52
    • 43049101093 scopus 로고    scopus 로고
    • Calibrating the avian molecular clock
    • Weir J., Schluter D. Calibrating the avian molecular clock. Mol. Ecol. 2008, 17:2321-2328.
    • (2008) Mol. Ecol. , vol.17 , pp. 2321-2328
    • Weir, J.1    Schluter, D.2
  • 53
    • 0027868461 scopus 로고
    • Petrology and geochemistry of the Galápagos Islands: portrait of a pathological mantle plume
    • White W.M., McBirney A.R., Duncan R.A. Petrology and geochemistry of the Galápagos Islands: portrait of a pathological mantle plume. J. Geophys. Res. Solid Earth 1993, 98:19533-19563.
    • (1993) J. Geophys. Res. Solid Earth , vol.98 , pp. 19533-19563
    • White, W.M.1    McBirney, A.R.2    Duncan, R.A.3
  • 54
    • 33750387249 scopus 로고    scopus 로고
    • Genetic Algorithm Approaches for the Phylogenetic Analysis of Large Biological Sequence Datasets Under the Maximum Likelihood Criterion
    • Ph.D. Dissertation, The University of Texas at Austin.
    • Zwickl, D.J., 2006. Genetic Algorithm Approaches for the Phylogenetic Analysis of Large Biological Sequence Datasets Under the Maximum Likelihood Criterion. Ph.D. Dissertation, The University of Texas at Austin.
    • (2006)
    • Zwickl, D.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.